mRNA_Ecto-sp13_S_contig10042.65.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A6H5KBQ9_9PHAE (PHB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBQ9_9PHAE) HSP 1 Score: 182 bits (461), Expect = 2.320e-54 Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 Query: 34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
+QVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQ AMRDGFM
Sbjct: 252 MQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQSAMRDGFM 347
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A6H5KP74_9PHAE (PHB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP74_9PHAE) HSP 1 Score: 175 bits (443), Expect = 1.340e-53 Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 1 Query: 34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
+QVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQ F+E IDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVA++Q AMRDGFM
Sbjct: 87 MQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAAIQAAMRDGFM 182
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: D8LDT1_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT1_ECTSI) HSP 1 Score: 175 bits (443), Expect = 3.320e-51 Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 1 Query: 34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
+QVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQ F+E IDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVA++Q AMRDGFM
Sbjct: 293 MQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAAIQAAMRDGFM 388
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A835YL74_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL74_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.690e-47 Identity = 79/96 (82.29%), Postives = 92/96 (95.83%), Query Frame = 1 Query: 34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
+QVKAAEAEAESKYLSGVGVSRQR+AIV GLRDS+ FS +I+GT+PKDVMDLLLLTQYFDMLRD+GQS++++T+FLPHAP+SVASLQGAMRDGFM
Sbjct: 184 MQVKAAEAEAESKYLSGVGVSRQRQAIVAGLRDSIHDFSSSIEGTTPKDVMDLLLLTQYFDMLRDIGQSTKSSTIFLPHAPESVASLQGAMRDGFM 279
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: F0YP67_AURAN (PHB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP67_AURAN) HSP 1 Score: 130 bits (327), Expect = 2.190e-36 Identity = 69/96 (71.88%), Postives = 80/96 (83.33%), Query Frame = 1 Query: 37 QVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAA-TVFLPHAPQSVASLQGAMRDGFM 321
QVKAAEA+AESKYLSGVGV+RQR+AIV GL+DS+ FS I GT+PKDVMDLLLLTQYFDML+DVG S + T+FLPHAP SVA LQ +M+ G M
Sbjct: 74 QVKAAEADAESKYLSGVGVARQRQAIVGGLQDSIIEFSGEIAGTTPKDVMDLLLLTQYFDMLKDVGASGVSGKTLFLPHAPSSVAELQKSMQSGLM 169
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A7S4IJZ4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IJZ4_9EUKA) HSP 1 Score: 133 bits (335), Expect = 2.840e-36 Identity = 61/94 (64.89%), Postives = 85/94 (90.43%), Query Frame = 1 Query: 40 VKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
VKAAEA+AESKYLSGVG++RQRKAIV+GL++SV TF+++++GTS KDVMDL+L+TQYFD L+D+G +S+++T+F+PH+P SV S+ +RDGFM
Sbjct: 186 VKAAEADAESKYLSGVGIARQRKAIVEGLQESVTTFADSVEGTSAKDVMDLVLVTQYFDTLKDLGSNSKSSTIFIPHSPGSVGSVAEQVRDGFM 279
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A6S8S5L6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8S5L6_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.950e-35 Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 1 Query: 34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQS-SRAATVFLPHAPQSVASLQGAMRDGFM 321
VQVKAAEA+AESKYLSGVGV+RQR+AIV GL+DS+ FS I GT+PKDVMDLLLLTQYFDML+DVG S S T+FLPHAP +V LQ ++++G M
Sbjct: 185 VQVKAAEADAESKYLSGVGVARQRQAIVGGLQDSIIEFSGEIAGTTPKDVMDLLLLTQYFDMLKDVGSSGSGGKTLFLPHAPSAVGDLQDSLKNGLM 281
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: W7TM34_9STRA (Hypersensitive-induced response protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM34_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.540e-34 Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 1 Query: 34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
VQVKAAEA AESKYL+G+G++R+RKAIVDGLR SV+ FSET++G +PKDVMDL+LLTQYFDML+DVG + T+F+ H P +V L+ +R G M
Sbjct: 184 VQVKAAEASAESKYLNGMGIARERKAIVDGLRGSVEEFSETVEGATPKDVMDLILLTQYFDMLKDVGNNPTPTTLFMTHGPSAVTELKEQLRAGIM 279
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A816WVN1_BRANA ((rape) hypothetical protein n=2 Tax=Brassica TaxID=3705 RepID=A0A816WVN1_BRANA) HSP 1 Score: 124 bits (311), Expect = 1.570e-34 Identity = 57/96 (59.38%), Postives = 78/96 (81.25%), Query Frame = 1 Query: 34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
+Q+K AE EAESKYLSG+G++RQR+AIVDGLR+SV FSE++ GTS KDVMD++L+TQYFD L+D+G SS++ VF+PH P +V + +RDG +
Sbjct: 27 LQIKRAEGEAESKYLSGLGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVTQYFDTLKDIGASSKSNAVFIPHGPGAVKDIASQIRDGLL 122
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Match: A0A699WBP0_TANCI (Uncharacterized protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699WBP0_TANCI) HSP 1 Score: 123 bits (309), Expect = 1.600e-34 Identity = 56/96 (58.33%), Postives = 77/96 (80.21%), Query Frame = 1 Query: 34 VQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQGAMRDGFM 321
+Q+K AE EAESKYLSG+G++RQR+AIVD LRDSV FSE + GTS KDVMD++L+TQYFD ++D+G SS+++ VF+PH P +V + +RDG +
Sbjct: 5 LQIKRAEGEAESKYLSGLGIARQRQAIVDSLRDSVLAFSENVPGTSAKDVMDMVLVTQYFDTMKDIGASSKSSAVFIPHGPGAVKDIADQIRDGLL 100 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10042.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10042.65.1 >prot_Ecto-sp13_S_contig10042.65.1 ID=prot_Ecto-sp13_S_contig10042.65.1|Name=mRNA_Ecto-sp13_S_contig10042.65.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp VACPLFLSFFRVQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSback to top mRNA from alignment at Ecto-sp13_S_contig10042:33..979+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10042.65.1 ID=mRNA_Ecto-sp13_S_contig10042.65.1|Name=mRNA_Ecto-sp13_S_contig10042.65.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=947bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10042:33..979+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10042:33..979+ >mRNA_Ecto-sp13_S_contig10042.65.1 ID=mRNA_Ecto-sp13_S_contig10042.65.1|Name=mRNA_Ecto-sp13_S_contig10042.65.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10042:33..979+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |