mRNA_Ecto-sp13_S_contig1004.61.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1004.61.1 vs. uniprot
Match: A0A6H5JKV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV8_9PHAE) HSP 1 Score: 894 bits (2310), Expect = 0.000e+0 Identity = 593/800 (74.12%), Postives = 611/800 (76.38%), Query Frame = 1 Query: 1 RKCQIRGCQRKTLFVGPADNDPAAATATATTIAGKATHCSDHWPAGFRPPPQETVPPQDGGSSLQDGQQVTHSADHRGSGTGGVNTLLGGQQAAAMGNVGETAAGGRAGKXXXXXXXXXGSSVSARPRRASGSLACRIPGCGKRATHGPPAEATRCAAHKEKGQIDHKHRLCENTTPKPCLKQPSFGWPGESRKRFCSAHRPTGTVDLRNCEQAGCGTRASHGFGKGXXXXXXXXXXXXTSLVANR------------------------------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGTRIPVACLEHSEGEMVDLKRERMRXXXXXXXXXXXXXXXXXXGTTEALVGPGVEELAGTAVAGRKRARASGGLGGNREIGRKIIDAIFTSSQLVLEAEGAATANDESEWEEGSAEDKEEEGEGEEGDRGSSMTLHMPPPPLAAPLSTSPPPTSALSPGVVPRMCPAPQAVGTVPDVATVGCTAQLEAVGEEERGQPGGERVALPGCAG-------GGVTVSSGREGGSGDGGGEGTREDG-STTRAGGERGRR-SNGSGAPSSSHSNSRCLIGCS--EDAATVTVTSVRAAAVGVTANTSSPKTMTRAMGAEVEVEAVPGRGLEGAMINQQXXXXXXXVGRQQLQPIPILEEIGIGTSLTWSCVRCGGVVPPNDRYVLVCCGYGVLHQDCTAAFVRPAIGVRPSPCPKCSRLVGSCLQVFM 2241
RKC+IRGCQRKTLFVGPADNDPAA TATATTIAG+ATHC+DHWPAGFRPPPQET PPQD GSSL DGQQ THSA+HRGSGTGG NTLLGGQQAAA+GNVGETAAGGRAGK GSSVSARPRRASGSLACRIPGCGKRATHGPPAEATRCAAHKEKGQIDHKHRLCE+TTPKPCLKQPSFGWPGESRKRFCSAHRP GTVDLR+CEQAGCGTRASHGFGKGXXXXXXXXXXXXTSLVANR P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TR+PVACLEHSEGEMVDLKRERMR GT EALV PG EELA AVAGRKRARASGGLGGNREIGRKIIDAIFTSSQLVL+AE AA AND+SEWEEGSAEDK RG SM+ H+PPP L APLS PPPT LSPG PR CPAPQ VG VPDVA VGCTAQ EA E ERGQP GERVAL G AG GG TV+SGR+GGSGDGGGEG +G STTRAGGERGRR SN SGAPSSS SN RCLIG S EDAAT TVTSV AAAVG TANT SPK TRA+G EV VEAVPGRGLEGAMI QQ XXXXXX LQPIPILEEIGIGTSLTW CVRCGGVVPP+DRYVLVCCGYGVLHQ+CTA FVRPAIGVRPSPCPKCSRLVGSCLQVFM
Sbjct: 8 RKCRIRGCQRKTLFVGPADNDPAAVTATATTIAGEATHCADHWPAGFRPPPQETAPPQDCGSSLHDGQQDTHSANHRGSGTGGGNTLLGGQQAAAVGNVGETAAGGRAGKGKRKDKGIGGSSVSARPRRASGSLACRIPGCGKRATHGPPAEATRCAAHKEKGQIDHKHRLCEDTTPKPCLKQPSFGWPGESRKRFCSAHRPAGTVDLRSCEQAGCGTRASHGFGKGXXXXXXXXXXXXTSLVANRVGQRLGGGXXXXXXXXXXXXXXXXXXXXXXXXXXGHLMLIPCPCEKEGCTVSPRFGDVGGKPRFCASHKESGMVNLKDRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVPVACLEHSEGEMVDLKRERMRMAQARKKAPAETAAAAGVGTMEALVEPGAEELAVIAVAGRKRARASGGLGGNREIGRKIIDAIFTSSQLVLDAESAAAANDDSEWEEGSAEDKXXXXXXXXXXRGPSMSFHLPPPKLPAPLSAPPPPTPTLSPGGFPRTCPAPQTVGMVPDVAAVGCTAQPEAAAEAERGQPAGERVALSGRAGEASVGAGGGATVTSGRKGGSGDGGGEGKCGEGRSTTRAGGERGRRRSNSSGAPSSSPSNFRCLIGGSAGEDAATATVTSVPAAAVGGTANTPSPKVKTRAVG-EVGVEAVPGRGLEGAMITQQQXXXXXXXXXXXLQPIPILEEIGIGTSLTWICVRCGGVVPPDDRYVLVCCGYGVLHQECTAVFVRPAIGVRPSPCPKCSRLVGSCLQVFM 806
BLAST of mRNA_Ecto-sp13_S_contig1004.61.1 vs. uniprot
Match: D8LRL1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL1_ECTSI) HSP 1 Score: 711 bits (1836), Expect = 4.490e-232 Identity = 551/646 (85.29%), Postives = 562/646 (87.00%), Query Frame = 1 Query: 1 RKCQIRGCQRKTLFVGPADNDPAAATATATTIAGKATHCSDHWPAGFRPPPQETVPPQDGGSSLQDGQQVTHSADHRGSGTGGVNTLLGGQQAAAMGNVGETAAGGRAGKXXXXXXXXXG--SSVSARPRRASGSLACRIPGCGKRATHGPPAEATRCAAHKEKGQIDHKHRLCENTTPKPCLKQPSFGWPGESRKRFCSAHRPTGTVDLRNCEQAGCGTRASHGFGKGXXXXXXXXXXXXTSLVANRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGTRIPVACLEHSEGEMVDLKRERMRXXXXXXXXXXXXXXXXXXGTTEALVGPGVEELAGTAVAGRKRARASGGLGGNREIGRKIIDAIFTSSQLVLEAEGAATANDESEWEEGSAEDKEEEGEGEEGDRGSSMTLHMPPPPLAAPLSTSPPPTSALSPGVVPRMCPAPQAVGTVPDVATVGCTAQLEAVGEEERGQPGGERVALPGCAG-------GGVTVSSGREGGSGDGGGEGTREDGSTTRAGGERG--RRSNGSGAPSSSHSNSRCLIGCS--EDAATVTVTSVRAAAVGVTANTSSPKTMTR 1899
RKC+IRGCQRKTLFVGPADNDPAAATATATTIAG+ATHC+DHWPAGFRPPPQETV PQDGGSSLQDGQQVTHSADHRGSGTGG NTLLG QQAAA+GNVGETAAGGRAGKXXXXXXXXX SSVSARPRRASGSLACRIPGCGKRATHGPPAEATRCAAHKEKGQIDHKHRLCENTTPKPCLKQPSFGWPGESRKRFCSAHRP GTVDLRNCEQAGCGTRASHGFGKGXXXXXXXXXXXXTSLVANRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGTR+PVACLEHSEGEMVDLKRERM XXXXXXXXXXXXXXXX T EALV G ELAGT VAGRKRARASGGLGGNREIGRKI+DAIFTSSQLVLEAEGAA ANDESEWEEGSAEDK GDRG M+ H+PPP L APLS PPPT ALSPGVVPR CPAPQAVG VPDVA VGC AQ EAV EEERGQP GERVAL GCAG GG TV+SGREGGSGDG RRS+ GA SSS SNSRCLIG S EDAAT TVTSV AAAVG TANT SPK T+
Sbjct: 8 RKCRIRGCQRKTLFVGPADNDPAAATATATTIAGEATHCADHWPAGFRPPPQETVLPQDGGSSLQDGQQVTHSADHRGSGTGGGNTLLGRQQAAAVGNVGETAAGGRAGKXXXXXXXXXXXXSSVSARPRRASGSLACRIPGCGKRATHGPPAEATRCAAHKEKGQIDHKHRLCENTTPKPCLKQPSFGWPGESRKRFCSAHRPAGTVDLRNCEQAGCGTRASHGFGKGXXXXXXXXXXXXTSLVANRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGTRVPVACLEHSEGEMVDLKRERMXXXXXXXXXXXXXXXXXGARTMEALVEQGAAELAGTTVAGRKRARASGGLGGNREIGRKIMDAIFTSSQLVLEAEGAAAANDESEWEEGSAEDKXXXXXXXXGDRGPGMSFHLPPPKLPAPLSAPPPPTPALSPGVVPRTCPAPQAVGMVPDVAAVGCAAQPEAVAEEERGQPAGERVALSGCAGEASVGAGGGATVTSGREGGSGDGXXXXXXXXXXXXXXXXXXXGRRRSSSRGAQSSSPSNSRCLIGVSAGEDAATATVTSVPAAAVGGTANTPSPKMGTK 653 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1004.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1004.61.1 >prot_Ecto-sp13_S_contig1004.61.1 ID=prot_Ecto-sp13_S_contig1004.61.1|Name=mRNA_Ecto-sp13_S_contig1004.61.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=748bp RKCQIRGCQRKTLFVGPADNDPAAATATATTIAGKATHCSDHWPAGFRPPback to top mRNA from alignment at Ecto-sp13_S_contig1004:9331..12399- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1004.61.1 ID=mRNA_Ecto-sp13_S_contig1004.61.1|Name=mRNA_Ecto-sp13_S_contig1004.61.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3069bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1004:9331..12399- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1004:9331..12399- >mRNA_Ecto-sp13_S_contig1004.61.1 ID=mRNA_Ecto-sp13_S_contig1004.61.1|Name=mRNA_Ecto-sp13_S_contig1004.61.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2244bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1004:9331..12399- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |