Homology
BLAST of mRNA_Ecto-sp13_S_contig10032.52.1 vs. uniprot
Match:
D7FH40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH40_ECTSI)
HSP 1 Score: 61.2 bits (147), Expect = 6.430e-12
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 1
Query: 1 MDVAGSCAMDARVRWRQLGANSPFACAPAVTQG 99
MDVAGSCAMDAR RW QLGA S ACAPAVTQG
Sbjct: 1 MDVAGSCAMDARARWSQLGATSHSACAPAVTQG 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10032.52.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 6.43e-12 / Id = 84.85 Sequence D7FH40_ECTSI
Match Name E-value Identity Description
D7FH40_ECTSI 6.430e-12 84.85 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 102 Hectar predicted targeting category no signal peptide or anchor Exons 2 Ec32 ortholog description Hypothetical protein Ec32 ortholog Ec-13_000700.1 Cds size 102
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462501.8331027-CDS-Ecto-sp13_S_contig10032:3103..3150 1681462501.8331027-CDS-Ecto-sp13_S_contig10032:3103..3150 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10032 3104..3150 + 1681462501.8412127-CDS-Ecto-sp13_S_contig10032:3531..3586 1681462501.8412127-CDS-Ecto-sp13_S_contig10032:3531..3586 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10032 3532..3586 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10032.52.1
>prot_Ecto-sp13_S_contig10032.52.1 ID=prot_Ecto-sp13_S_contig10032.52.1|Name=mRNA_Ecto-sp13_S_contig10032.52.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MDVAGSCAMDARVRWRQLGANSPFACAPAVTQG* back to top mRNA from alignment at Ecto-sp13_S_contig10032:3104..3586+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10032.52.1 ID=mRNA_Ecto-sp13_S_contig10032.52.1|Name=mRNA_Ecto-sp13_S_contig10032.52.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10032:3104..3586+ (Ectocarpus species13 EcNAP12_S_4_19m)ATGGATGTGGCGGGGTCATGTGCGATGGATGCTCGAGTAAGATGGAG GTG
AGACGCTACGAACGACGGTATTTGATTTCGCTCCTGTACTACGAGCGCAT
GGCATGACATGAGACGACATGACATGACATGACATGACATGACATGACAT
GACATGACATGGACTGATGACGTCCCGGCGAGGTAGATGTCGTAAGAGGA
AATGACGTTGCGCCAAAGCACTGTTCACGGTCACAAGGTTGGGTGTTTGC
TACCCCAACTTCCTCTGCCACCGTTGACTGGCTGTCATCACCGAACCCTG
TCGTGAAAAGAACGAACCGCGCATCACCTGGGGGAGGCAAGGCTTGCACC
GTTTGCGTCCCACCGCACCAAGCATGCTTTGCCCCTGTGCCTGTGGCCCG
AAATACATCACCGTTATCGCAACGACAGGCAACTCGGGGCAAACAGCCCC
TTCGCGTGTGCCCCGGCTGTAACGCAAGGTTGA back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10032:3104..3586+
>mRNA_Ecto-sp13_S_contig10032.52.1 ID=mRNA_Ecto-sp13_S_contig10032.52.1|Name=mRNA_Ecto-sp13_S_contig10032.52.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10032:3104..3586+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top