mRNA_Ecto-sp13_S_contig100298.51.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: D1J703_ECTSI (Uncharacterized protein ycf19 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J703_ECTSI) HSP 1 Score: 232 bits (592), Expect = 3.300e-77 Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 1 Query: 1 MKFSLEGIGTYLYNFVDGRLPQQMTLSALTQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSIIIY 360
MKFSLEGIG YLYNFVDGRLPQQMTL+ LTQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIA+TDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSIIIY
Sbjct: 1 MKFSLEGIGAYLYNFVDGRLPQQMTLNDLTQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIAITDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSIIIY 120
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: A0A7T8G5F0_SCYLO (Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5F0_SCYLO) HSP 1 Score: 193 bits (491), Expect = 8.600e-62 Identity = 92/119 (77.31%), Postives = 107/119 (89.92%), Query Frame = 1 Query: 1 MKFSLEGIGTYLYNFVDGRLPQQMTLSALTQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSIII 357
MK S+EG+G +LYNFVD RLPQ M L+ LT +DYL LTILFTV+FLKGYYWALSIRF+VQWFPN+NPYIHP+FGLI +TDIFLKEF+ LLP I GMD+SAMMAF+CLEWMIRTL+SI+I
Sbjct: 2 MKLSIEGVGEFLYNFVDTRLPQGMVLNDLTGRDYLFLTILFTVLFLKGYYWALSIRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESIVI 120
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: A0A1I9LVX8_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX8_9PHAE) HSP 1 Score: 189 bits (479), Expect = 5.620e-60 Identity = 89/119 (74.79%), Postives = 108/119 (90.76%), Query Frame = 1 Query: 1 MKFSLEGIGTYLYNFVDGRLPQQMTLSALTQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSIII 357
MKFS+EGI ++YNFV+ RLPQ M L+ALT++DY+ LTIL TV+FLK YYWALS+RF+VQWFPN+NPYIHP+FGLI +TDIFLKEF+ LLP ILGMD+SAM+AF+CLEWMIRTL+SIII
Sbjct: 1 MKFSMEGISIFIYNFVNNRLPQGMVLNALTKRDYIFLTILCTVLFLKSYYWALSVRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPNILGMDMSAMLAFVCLEWMIRTLESIII 119
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: A0A6B7EZ30_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZ30_9PHAE) HSP 1 Score: 178 bits (452), Expect = 6.250e-56 Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 1 Query: 34 LYNFVDGRLPQQMTLSALTQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSIII 357
+YNFV+ RLPQ M L L +KDYL LTILFTV+FLKGYYWALSIRFVVQWFPN+NPYIHP+FGLI +TDIFLKEF+ LLP I GMD+SAMMAF+CLEWMIRTL+SIII
Sbjct: 7 IYNFVNNRLPQGMVLDNLEKKDYLILTILFTVLFLKGYYWALSIRFVVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESIII 114
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: A0A2R4QPX8_9PHAE (Conserved hypothetical plastid protein n=2 Tax=Fucus TaxID=3011 RepID=A0A2R4QPX8_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.540e-33 Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 1 Query: 94 KDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSI 351
KD L L I F +FL+ YYW L++R +QWFPNINPYIHP++ LI T+ FLK+F+DLLP ILGMD+SAM AFLCLEWMIRTL+SI
Sbjct: 28 KDILNLIIYFMKVFLRQYYWVLTLRLSIQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESI 113
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: A0A1L2F1J6_9PHAE (Ycf19 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1J6_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.020e-31 Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 1 Query: 94 KDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSI 351
+D L I F +FL+ YYW L++R +QWFPNINPYIHP++ LI T+ FLK+F++LLP ILGMD+SAM AFLCLEW+IRTLDSI
Sbjct: 28 RDILNFIIYFIKVFLRQYYWILTLRLSIQWFPNINPYIHPIYALIFSTEFFLKQFKNLLPIILGMDMSAMCAFLCLEWIIRTLDSI 113
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: A0A8F0F7Z7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Z7_9PHAE) HSP 1 Score: 115 bits (289), Expect = 4.670e-31 Identity = 52/88 (59.09%), Postives = 69/88 (78.41%), Query Frame = 1 Query: 88 TQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSI 351
T D L + + F + L+ YYW L++R +QWFPNINPYIHP++ L+ TD FLKEFE+++P ILGMD+S+M AF+CLEWMIRTL+SI
Sbjct: 28 TTFDVLNMVVHFLKLALRQYYWILTLRLSIQWFPNINPYIHPMYSLLYATDFFLKEFEEIIPAILGMDMSSMCAFICLEWMIRTLESI 115
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: A0A8F0F7C2_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7C2_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.300e-29 Identity = 48/71 (67.61%), Postives = 62/71 (87.32%), Query Frame = 1 Query: 136 LKGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDS 348
+K YYW L++RF VQWFPNINPYIHPL+GLI TD+FL++FE+ LP ILG+D+S+M AF CLEWM++TLD+
Sbjct: 80 IKAYYWLLTLRFTVQWFPNINPYIHPLYGLIWATDLFLRQFENFLPDILGLDMSSMCAFACLEWMMQTLDA 150
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: A0A8E5XRH1_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRH1_9PHAE) HSP 1 Score: 111 bits (277), Expect = 2.060e-29 Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 1 Query: 139 KGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSIIIY 360
K YYW L++R +QWFPNINPY+HP++ L+ LTD FL+ FE L+P +LGMD+S+M+AF+CLEW+IRTLDSI Y
Sbjct: 33 KSYYWILTLRLSMQWFPNINPYVHPMYALLYLTDPFLENFEGLVPNVLGMDMSSMLAFICLEWIIRTLDSIAFY 106
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Match: A0A0S0GAB4_COSCS (Uncharacterized protein n=25 Tax=Laminariales TaxID=2886 RepID=A0A0S0GAB4_COSCS) HSP 1 Score: 108 bits (270), Expect = 3.470e-28 Identity = 49/88 (55.68%), Postives = 68/88 (77.27%), Query Frame = 1 Query: 88 TQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIALTDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSI 351
T+ + L L + V L+ YYW L++R +QWFPNINPYIHP++ L+ TD FLKEF+D++P +LGMD+S+M AF+ LEW+IRTL+SI
Sbjct: 24 TRAEMLNLLVTAMVAGLRQYYWILTLRLSIQWFPNINPYIHPMYSLLHATDFFLKEFDDIVPTVLGMDMSSMCAFIFLEWIIRTLESI 111 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100298.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100298.51.1 >prot_Ecto-sp13_S_contig100298.51.1 ID=prot_Ecto-sp13_S_contig100298.51.1|Name=mRNA_Ecto-sp13_S_contig100298.51.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp MKFSLEGIGTYLYNFVDGRLPQQMTLSALTQKDYLALTILFTVMFLKGYYback to top mRNA from alignment at Ecto-sp13_S_contig100298:35..397+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100298.51.1 ID=mRNA_Ecto-sp13_S_contig100298.51.1|Name=mRNA_Ecto-sp13_S_contig100298.51.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100298:35..397+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100298:35..397+ >mRNA_Ecto-sp13_S_contig100298.51.1 ID=mRNA_Ecto-sp13_S_contig100298.51.1|Name=mRNA_Ecto-sp13_S_contig100298.51.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100298:35..397+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |