mRNA_Ecto-sp13_S_contig10029.50.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5KZG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG4_9PHAE) HSP 1 Score: 304 bits (778), Expect = 2.470e-97 Identity = 154/169 (91.12%), Postives = 160/169 (94.67%), Query Frame = 2 Query: 65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 MKVDIKDLI LEAELKKSCDS PPVVRDAKVNLLKYLQIQTVLQFEAAYD LYYEL KEGGLECLR+IAPFRSKDFSQPKVLELHGCGDEDVRLA QLEFYLA AELAK+RLDEIITN+ADDWGRYEVQ+V+VKSRESTQRKVRRFYGGDVRKV DMARV+VI LTPE Sbjct: 1 MKVDIKDLIGLEAELKKSCDSATPPVVRDAKVNLLKYLQIQTVLQFEAAYDNLYYELGKEGGLECLRDIAPFRSKDFSQPKVLELHGCGDEDVRLANQLEFYLAGAELAKRRLDEIITNLADDWGRYEVQHVEVKSRESTQRKVRRFYGGDVRKVADMARVSVICLTPE 169
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D8LQL3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI) HSP 1 Score: 301 bits (772), Expect = 1.680e-96 Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 2 Query: 65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 MKVDIKDLI LEAELKKSCDSV PPVVR AKVNLLKYLQIQTVL FEAAYDTLYYELDKEGGLECLR+IAPFRSKDFSQPK LEL+GC DEDVRLAKQLEFYLADAELAKQRLDEIITN+ADDWGRYEVQYV+VKS ESTQRKVRR Y GDVRKVTDMARVTVI LTPE Sbjct: 1 MKVDIKDLIRLEAELKKSCDSVTPPVVRGAKVNLLKYLQIQTVLLFEAAYDTLYYELDKEGGLECLRDIAPFRSKDFSQPKALELYGCVDEDVRLAKQLEFYLADAELAKQRLDEIITNLADDWGRYEVQYVEVKSWESTQRKVRRLYDGDVRKVTDMARVTVICLTPE 169
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5JHK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK0_9PHAE) HSP 1 Score: 208 bits (530), Expect = 6.040e-64 Identity = 111/169 (65.68%), Postives = 128/169 (75.74%), Query Frame = 2 Query: 65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 M VDI +L+ LEAEL+ SC+ P RDAK+NLLK+LQI+ VLQ+E AYD LYYEL+K GGLECLREIAP R KD QPKVLEL C +EDVR A QLEFYLADAELAK RLDE++ ++A G EV +VKSR STQRK + YGGDVRKV DMARV+VI PE Sbjct: 1 MSVDIAELLRLEAELENSCEDCRNPYDRDAKLNLLKFLQIRAVLQYEEAYDRLYYELNKHGGLECLREIAPARLKDLLQPKVLELQDC-NEDVRFAAQLEFYLADAELAKNRLDELVADIAKHTGECEVHCAEVKSRASTQRKASKSYGGDVRKVADMARVSVICDNPE 168
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D7FH93_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH93_ECTSI) HSP 1 Score: 204 bits (519), Expect = 1.220e-59 Identity = 110/169 (65.09%), Postives = 127/169 (75.15%), Query Frame = 2 Query: 65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 M VDI +LI LEAELK SC+S PV DAKVN+LKYLQ+QTVL+F+ YD LYYEL+K GGLECLR IA RS + QPKVL L C ED +L KQL+FYLADAELAK LDE++T VA D +YEVQ +VKSREST+RK R + GDVRKV DMARVT+I PE Sbjct: 1 MDVDINELIRLEAELKTSCESETSPVSLDAKVNILKYLQVQTVLRFQGQYDGLYYELNKTGGLECLRGIAAVRSTELLQPKVLGLQDCS-EDEQLEKQLQFYLADAELAKPNLDELVTKVAHDSSKYEVQRAEVKSRESTRRKASREHDGDVRKVADMARVTLICANPE 168
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI) HSP 1 Score: 207 bits (526), Expect = 2.310e-58 Identity = 109/169 (64.50%), Postives = 128/169 (75.74%), Query Frame = 2 Query: 65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 M VDI +L+ LEAEL+ SC+ P RDAK+NLLK+LQI+ VLQFE AYD LYYEL+K GGLECLREIAP R KD QPKVLEL C +E VR A QLEFYLADAELAK RLDE++ ++A+ G EV +VKSR TQRK R+ YGGDVRKV DMAR++VI P+ Sbjct: 1 MSVDIAELLRLEAELENSCEDCQNPYDRDAKLNLLKFLQIRAVLQFEEAYDQLYYELNKHGGLECLREIAPARPKDLLQPKVLELQDC-NEGVRFAAQLEFYLADAELAKNRLDELVADIAEHTGECEVHCAEVKSRAITQRKARKSYGGDVRKVADMARISVICDNPQ 168
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 206 bits (525), Expect = 3.380e-58 Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 2 Query: 65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 M +DI +L LEAEL+ SC++ P RDAK+NLLK+LQI+ VLQFE AYD LYYEL+K GGL+CLREI P R KD QPKVLEL C EDVR A QLEFYLADA+LAK RLDE++ ++A D G +V +VKSR STQRK R+ Y GDVRKVTDMARV+VI TPE Sbjct: 1428 MSIDIAELRRLEAELENSCETCQNPYDRDAKLNLLKFLQIKAVLQFERAYDHLYYELNKHGGLKCLREITPARPKDLLQPKVLELQDC-HEDVRFAAQLEFYLADAKLAKNRLDELVVDIAKDTGGCQVHCAEVKSRASTQRKARKSYDGDVRKVTDMARVSVICDTPE 1595
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE) HSP 1 Score: 196 bits (498), Expect = 8.270e-58 Identity = 106/169 (62.72%), Postives = 123/169 (72.78%), Query Frame = 2 Query: 65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 M VDI++L+ LE ELK SC+ P DAK+N+LK LQ+QTV+QF+ AYD LYYEL+KEGGLECLR IAP RS QPKVL+ C DE +L QL+FYLADAELAK LDE+IT VA D +Y+VQ DVKS EST+RK GGDVRKV DMARV VI TPE Sbjct: 1 MNVDIEELLRLENELKASCERETSPATPDAKMNILKCLQVQTVVQFQLAYDDLYYELNKEGGLECLRSIAPARSTGIVQPKVLDPQNC-DEGGQLENQLQFYLADAELAKPHLDELITKVAHDSSKYKVQCADVKSWESTRRKASNSCGGDVRKVADMARVAVICATPE 168
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D7G1L3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L3_ECTSI) HSP 1 Score: 203 bits (516), Expect = 9.790e-58 Identity = 110/167 (65.87%), Postives = 124/167 (74.25%), Query Frame = 2 Query: 71 VDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 VDI DL+ LEAELK S + DAKVNLLKYLQ+QTVLQF+AAYD LYYEL K GGL+CLR IAP S QPKV + CG ED +L QL+FYLADAELAK LDE++ NVA D +YEVQ+VDVKSREST+RK RF GDVRKV D+ARVTVI TPE Sbjct: 4 VDINDLLRLEAELKTSRERETSSTSLDAKVNLLKYLQVQTVLQFQAAYDDLYYELSKTGGLDCLRTIAPVPSTGVFQPKVFDPQDCG-EDEQLENQLQFYLADAELAKAHLDELVMNVAHDMSKYEVQFVDVKSRESTRRKASRFCDGDVRKVADIARVTVICTTPE 169
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE) HSP 1 Score: 201 bits (512), Expect = 4.800e-57 Identity = 111/167 (66.47%), Postives = 126/167 (75.45%), Query Frame = 2 Query: 71 VDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 VDI +L+ LEAELK S V DAKVNLLKYLQIQTVLQF+AAYD +YYEL + GGL+CLR IAP RS QPKVL+L CG +D +L KQLEFYLADAELAK LDE++ NVA D +YEVQ V++KSREST+RK Y GDVRKV DMARVTVI TPE Sbjct: 4 VDISELLRLEAELKSSRARETWTVSLDAKVNLLKYLQIQTVLQFQAAYDDMYYELHQTGGLDCLRSIAPVRSTGVFQPKVLDLQDCGQDD-QLEKQLEFYLADAELAKACLDELVMNVAHDSSKYEVQCVEIKSRESTRRKASTGYDGDVRKVADMARVTVICATPE 169
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D7FGT0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT0_ECTSI) HSP 1 Score: 200 bits (509), Expect = 3.200e-56 Identity = 106/169 (62.72%), Postives = 126/169 (74.56%), Query Frame = 2 Query: 65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571 M +DI +L LEAEL+ SC+ P RDAK+NLLK+LQI+ VLQFE AYD LYYEL+K+GGL+CLREI P R KD QPKVLEL C EDVR A QL+FYLADA+LAK LDE++ ++ G +VQ +VKSR STQRK R+ YG DVRKV DMARV+VI TPE Sbjct: 1 MSIDIAELRRLEAELENSCEECQNPYDRDAKLNLLKFLQIKAVLQFERAYDQLYYELNKDGGLKCLREITPARPKDLLQPKVLELQDC-HEDVRFAAQLDFYLADAKLAKNHLDELVADITKGTGGCQVQCAEVKSRASTQRKARKSYGADVRKVADMARVSVICDTPE 168 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10029.50.1 >prot_Ecto-sp13_S_contig10029.50.1 ID=prot_Ecto-sp13_S_contig10029.50.1|Name=mRNA_Ecto-sp13_S_contig10029.50.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYback to top mRNA from alignment at Ecto-sp13_S_contig10029:2106..4723+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10029.50.1 ID=mRNA_Ecto-sp13_S_contig10029.50.1|Name=mRNA_Ecto-sp13_S_contig10029.50.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10029:2106..4723+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10029:2106..4723+ >mRNA_Ecto-sp13_S_contig10029.50.1 ID=mRNA_Ecto-sp13_S_contig10029.50.1|Name=mRNA_Ecto-sp13_S_contig10029.50.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10029:2106..4723+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |