mRNA_Ecto-sp13_S_contig10029.49.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: D8LQL4_ECTSI (Carbamoyl-phosphate synthase (Glutamine-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQL4_ECTSI) HSP 1 Score: 147 bits (372), Expect = 6.620e-38 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 Query: 295 MAMRSDSSAKRSTRAATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 MAMRSDSSAKRSTRAATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV Sbjct: 1 MAMRSDSSAKRSTRAATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 76
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: X1NRJ5_9ZZZZ (CPSase_sm_chain domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1NRJ5_9ZZZZ) HSP 1 Score: 99.0 bits (245), Expect = 5.610e-24 Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1 Query: 346 LTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 L LEDGT G SFGA++SV+GEVVF+TGMVGY ESLTDPSYKGQ+LTLTYP+IGNYGV Sbjct: 6 LVLEDGTEYRGQSFGAELSVSGEVVFNTGMVGYNESLTDPSYKGQILTLTYPLIGNYGV 64
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: A0A7S1UQY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQY8_9STRA) HSP 1 Score: 101 bits (252), Expect = 6.000e-24 Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 292 FMAMRSDSSAKRSTRAATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 FM+ +S AKR + A L LEDGT L G SFG+ SV GEVVFSTGMVGY ESLTDPSY+GQ+LTLT PM+GNYGV Sbjct: 48 FMSTKSGDDAKRPEKLARLHLEDGTTLTGRSFGSHESVEGEVVFSTGMVGYPESLTDPSYQGQILTLTSPMVGNYGV 124
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: K2C0U7_9BACT (CPSase_sm_chain domain-containing protein (Fragment) n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2C0U7_9BACT) HSP 1 Score: 97.1 bits (240), Expect = 3.010e-23 Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1 Query: 340 ATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 A L L+DGTV HG+SFG S+ GEVVF+TGMVGY E+LTDPSY+GQ+LTLTYPMIGNYGV Sbjct: 5 AQLILQDGTVYHGWSFGYHKSMDGEVVFNTGMVGYPETLTDPSYRGQILTLTYPMIGNYGV 65
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: A0A661YGR6_9BACT (Carbamoyl-phosphate synthase (Glutamine-hydrolyzing) small subunit (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661YGR6_9BACT) HSP 1 Score: 96.3 bits (238), Expect = 5.700e-23 Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1 Query: 340 ATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 A L LEDGT+ +GYSFG SV+GEVVF+T M GY ESLTDPSYKGQ+LTLTYP++GNYGV Sbjct: 7 AKLILEDGTIFNGYSFGYKGSVSGEVVFNTAMTGYPESLTDPSYKGQILTLTYPLVGNYGV 67
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: A0A7V4F490_9BACT (Carbamoyl-phosphate synthase small chain n=2 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V4F490_9BACT) HSP 1 Score: 102 bits (255), Expect = 7.260e-23 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 334 RAATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 + A L LEDGTV+ G+SFGAD SVAGEVVF+T MVGY ESLTDPSYKGQ+L LTYPM+GNYG+ Sbjct: 6 KVAKLILEDGTVMTGFSFGADTSVAGEVVFNTSMVGYPESLTDPSYKGQILVLTYPMVGNYGI 68
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: A0A7S2G1N5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1N5_9STRA) HSP 1 Score: 104 bits (259), Expect = 9.990e-23 Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1 Query: 340 ATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 ATL LEDGT L GYSFGA V+GEVVFSTGMVGY ESLTDPSYKGQ+L+LTYPMIGNYGV Sbjct: 36 ATLVLEDGTRLPGYSFGARTGVSGEVVFSTGMVGYTESLTDPSYKGQLLSLTYPMIGNYGV 96
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: A0A7S1H286_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H286_HEMAN) HSP 1 Score: 103 bits (258), Expect = 1.360e-22 Identity = 66/163 (40.49%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 67 TVILRALLSIPRVCGALRCRAAVALQQAHTPYVATPRVRSNHHPSSQSLHDS----SRRAAFPLRCR-------GGAIKGSTAVSKFMAMRSDSSAKRSTRAATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 +++L + ++ V AL R+ A+ ++ +A P N PS L + SR A+ ++ R GG + G++ VSK R+ R TL LEDG+V G SFG+++SV+GEVVF+TGMVGY E+LTDPSY+GQ+L TYP++GNYGV Sbjct: 30 SIMLTSSVARKGVASALSLRSVAAMTRSFR--IAAPSAPRNSFPSPAGLRPAPPAFSRGMAYDIQKRQDAALDVGGGMGGTSGVSK-----------RTDRRCTLVLEDGSVYSGQSFGSEISVSGEVVFNTGMVGYVENLTDPSYRGQLLVSTYPLLGNYGV 179
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: A9V281_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V281_MONBE) HSP 1 Score: 95.9 bits (237), Expect = 1.870e-22 Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 1 Query: 340 ATLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 ATL LEDGT +GYSFGA VSV GE VF TGMVGY ESLTDPSY Q+L LT+PMIGNYGV Sbjct: 22 ATLVLEDGTRFNGYSFGAPVSVVGETVFQTGMVGYPESLTDPSYTRQLLCLTFPMIGNYGV 82
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Match: A0A533XPX0_9BACT (Carbamoyl phosphate synthase small subunit (Fragment) n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A533XPX0_9BACT) HSP 1 Score: 99.8 bits (247), Expect = 2.410e-22 Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 1 Query: 343 TLTLEDGTVLHGYSFGADVSVAGEVVFSTGMVGYAESLTDPSYKGQMLTLTYPMIGNYGV 522 TL LEDG+VL GYSFG+ S +GEVVF+TGMVGY ESLTDPSYKGQ+L LTYP+IGNYGV Sbjct: 20 TLILEDGSVLEGYSFGSPKSASGEVVFNTGMVGYLESLTDPSYKGQILVLTYPLIGNYGV 79 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10029.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10029.49.1 >prot_Ecto-sp13_S_contig10029.49.1 ID=prot_Ecto-sp13_S_contig10029.49.1|Name=mRNA_Ecto-sp13_S_contig10029.49.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp TRPAYGVARFHGLPAPAAAAAATVILRALLSIPRVCGALRCRAAVALQQAback to top mRNA from alignment at Ecto-sp13_S_contig10029:48..1921- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10029.49.1 ID=mRNA_Ecto-sp13_S_contig10029.49.1|Name=mRNA_Ecto-sp13_S_contig10029.49.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1874bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10029:48..1921- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10029:48..1921- >mRNA_Ecto-sp13_S_contig10029.49.1 ID=mRNA_Ecto-sp13_S_contig10029.49.1|Name=mRNA_Ecto-sp13_S_contig10029.49.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10029:48..1921- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |