mRNA_Ecto-sp13_S_contig10028.47.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Match: D8LSY3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY3_ECTSI) HSP 1 Score: 508 bits (1307), Expect = 2.880e-179 Identity = 298/325 (91.69%), Postives = 302/325 (92.92%), Query Frame = 1 Query: 1 MTPKNLPLFAPTRRLSSCLVALLTYGVAQAGEGALDQRPKQ-IHPSYLNSYLQQQQLPQQQRQQHADQLQLTPAVSTTAKLLGRITGGANXXXXXXXXXXXXXXXXXXXXXXXAAPDAIEVSGADLAESTNGRSSQRQHLDGVYVREWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRSSAGANRYGGSSDNGLASAETQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 972
MTPKN PLFAPTRRLSSCLVALLTYGVAQAGEGALDQRP+Q IHPSYL QQQ A+QLQLTPAVSTTAKLL RITGGAN XXXXXXXXXXXXXXXXXXXXXAAPDAIEVSGAD AESTNGRSSQ+QHLDGVYVR WDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESR+SAGANRYGGSS NGLASAE QKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY
Sbjct: 1 MTPKNSPLFAPTRRLSSCLVALLTYGVAQAGEGALDQRPQQQIHPSYLQ---QQQLXXXXXXXXXAEQLQLTPAVSTTAKLLDRITGGANSHXXXXXXXXXXXXXXXXXXXXXAAPDAIEVSGADFAESTNGRSSQQQHLDGVYVRGWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRASAGANRYGGSSGNGLASAEAQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 322
BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Match: A0A6H5L781_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L781_9PHAE) HSP 1 Score: 492 bits (1266), Expect = 1.690e-166 Identity = 291/324 (89.81%), Postives = 294/324 (90.74%), Query Frame = 1 Query: 1 MTPKNLPLFAPTRRLSSCLVALLTYGVAQAGEGALDQRPKQIHPSYLNSYLQQQQLPQQQRQQHADQLQLTPAVSTTAKLLGRITGGANXXXXXXXXXXXXXXXXXXXXXXXAAPDAIEVSGADLAESTNGRSSQRQHLDGVYVREWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRSSAGANRYGGSSDNGLASAETQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 972
MTPK PLFAPTRRLSSCL+ALLTYGVAQAGEGALDQRPKQIHPSYL QLQLTPAVSTTAKLL RITG XXXXXXXXXXXXXXXXXXXXXX AAPDAIEVSGADLAESTNGRSSQ+QHLDGVYVREWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSP AEPRVPAWKAK ESR+SAGANRY GSSDNGLASAE QKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY
Sbjct: 1 MTPKKSPLFAPTRRLSSCLIALLTYGVAQAGEGALDQRPKQIHPSYLQQXXX---XXXXXXXXXXXQLQLTPAVSTTAKLLERITGXXXXXXXXXXXXXXXXXXXXXXXXX-AAPDAIEVSGADLAESTNGRSSQQQHLDGVYVREWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPGAEPRVPAWKAKAESRASAGANRYSGSSDNGLASAEAQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 320
BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Match: A0A4D9D6H6_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6H6_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.180e-18 Identity = 72/210 (34.29%), Postives = 108/210 (51.43%), Query Frame = 1 Query: 388 NGRSSQRQHLDGVYVR-EWDVNGAPHFKRR------------SKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPA--WKAKEESRSSAGANRYGGSSDNGLASAETQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 972
N SS R ++GV+ R +WD NG H+++ S VHL++ GS+W+LHLD+D L+ ++ L Y +V +P RT R W +R + W+ +R+ VP ++ +EES S+A A LAS T RL+P++ F LDAVG G+A P+LPF++M L A A QL +V++ NY
Sbjct: 70 NAPSSLRM-INGVFTRTDWDHNGRAHYEKVMTSEEMTLAQEFSVFAEERRVVHLYWHGSQWVLHLDLDPALNYDNYLGYCKVNSRDPGRTDRSWLLRENKKWLPATSLRV---------HVPGRQYEKREESASAAAA----------LASIPTPP---------RLVPVFIAFFLDAVGTGLASPLLPFYIMSLGANAFQLGLVLAFNY 250
BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Match: A0A482SL66_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL66_9ARCH) HSP 1 Score: 64.3 bits (155), Expect = 9.370e-8 Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 502 VHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRSSAGANRYGGSSDNGLASAETQKAIDDA------ALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNY 972
++LF+TGS W L + + + LAYSE + + T W V++G+ + P M + +P+ + K E+ DN ETQ D+ + R+LLP Y F+LDA+ +G+ +P+LPFFVMGL A A QL++VVSSNY
Sbjct: 1 MYLFWTGSVWALSYQ-SPHSNQSDLLAYSESNKPEIMSGT-SWYVKLGKKFELSPLMGV--NAPEKQ------KVNEDEE------------DN-----ETQADSTDSDNKEVLGVPRQLLPYYVAFMLDAIAVGLVMPLLPFFVMGLGADAFQLSMVVSSNY 136 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10028.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10028.47.1 >prot_Ecto-sp13_S_contig10028.47.1 ID=prot_Ecto-sp13_S_contig10028.47.1|Name=mRNA_Ecto-sp13_S_contig10028.47.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=324bp MTPKNLPLFAPTRRLSSCLVALLTYGVAQAGEGALDQRPKQIHPSYLNSYback to top mRNA from alignment at Ecto-sp13_S_contig10028:2..3331- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10028.47.1 ID=mRNA_Ecto-sp13_S_contig10028.47.1|Name=mRNA_Ecto-sp13_S_contig10028.47.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10028:2..3331- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10028:2..3331- >mRNA_Ecto-sp13_S_contig10028.47.1 ID=mRNA_Ecto-sp13_S_contig10028.47.1|Name=mRNA_Ecto-sp13_S_contig10028.47.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10028:2..3331- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |