mRNA_Ecto-sp13_S_contig10027.46.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: D8LND7_ECTSI (ANAPC4_WD40 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND7_ECTSI) HSP 1 Score: 361 bits (927), Expect = 1.360e-124 Identity = 174/183 (95.08%), Postives = 175/183 (95.63%), Query Frame = 1 Query: 1 MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSKTGDYLALGTGKGTMCIYHRRTNEKA*AHVKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQVGHCCRIL 549 MDPLFVVDARHHGKGPV+FAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSKTGDYLALGTGKGTMCIYHRRTNEK A KHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQV CR L Sbjct: 1 MDPLFVVDARHHGKGPVVFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSKTGDYLALGTGKGTMCIYHRRTNEKMWAAGKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQVKVKCRPL 183
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: A0A6H5KF58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF58_9PHAE) HSP 1 Score: 276 bits (706), Expect = 5.680e-89 Identity = 146/197 (74.11%), Postives = 150/197 (76.14%), Query Frame = 1 Query: 1 MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSKTGDYLALGTGKGTMCIYHRRTNEKA*AHV--------------KHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQVGHCCRIL 549 MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVV+LWFTRQWKTRAVDVGVK D+ L G HR + H+ KHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQV CR L Sbjct: 1 MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVVLWFTRQWKTRAVDVGVK--------VGRDFRELVQDGGLPRPRHREGDH---VHIPPPHQREGMMWAAGKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQVKVKCRPL 186
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: A0A6U4HMC2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HMC2_9STRA) HSP 1 Score: 177 bits (449), Expect = 1.560e-50 Identity = 92/183 (50.27%), Postives = 119/183 (65.03%), Query Frame = 1 Query: 1 MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSKTGDYLALGTGKGTMCIYHRRTNEKA*AHVKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQVGHCCRIL 549 M+P F++D R+HG GPV+F WHP+G +LATSGSNR V IF+ G LL T + +T ACT L W G +LAI QANSSVVLLW W R +DVG+K+V+ + WSK+ + LA+GT KG + IY T K A +HKRRI W + LAY S+DKQI++ + G + DQV CR L Sbjct: 34 MEPCFILDDRYHGAGPVLFRWHPRGHVLATSGSNRKVQIFSREGYLLATPVAASST-ACTDLAWSVSGATLAIGQANSSVVLLWDYETWVVRELDVGLKEVSLLLWSKSDNILAIGTSKGVVYIYDMDTGMKIEAGGRHKRRIISADWLGSSSLAYASEDKQITMCTSAGIMLDQVKVKCRPL 215
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: A0A8K1FPE2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPE2_PYTOL) HSP 1 Score: 161 bits (408), Expect = 2.020e-44 Identity = 83/176 (47.16%), Postives = 115/176 (65.34%), Query Frame = 1 Query: 10 LFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKT-RAVDVGVKDVTFVSWSKTG--DYLALGTGKGTMCIYHRRTNEKA*AHVKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQV 528 +F VDARHHG GPV +AW P G +A++G++R+ HIF+ G+L+ I P+ S CT LEW G LAI QANSS ++LW ++ + + VD+ KDV+F+ WSK LALGT +G + IY T EK A KHKRRI CG W+ +N+ A+GS+D+QI++ G+ DQV Sbjct: 4 VFSVDARHHGTGPVKYAWDPHGNYVASTGNSRVAHIFSRRGKLVDQIVP-PSPSPCTLLEWSQNGEILAIVQANSSALVLWEPKKIREHQLVDLPCKDVSFMKWSKASGSQLLALGTNRGQVYIYDHSTGEKTQAVSKHKRRILCGDWNMENKFAFGSEDRQITICLPNGRTFDQV 178
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: A0A1V9ZYX0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYX0_9STRA) HSP 1 Score: 157 bits (396), Expect = 7.420e-43 Identity = 80/182 (43.96%), Postives = 111/182 (60.99%), Query Frame = 1 Query: 1 MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSK------TGDYLALGTGKGTMCIYHRRTNEKA*AHVKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQV 528 M F VD RHHG G V +AW P G LA++G +R+VHIF G+L+ I P+ S CT LEW L LAIAQANS +VLLW T VD+ +K++T + W+K + D LA+GT +G + +Y + A KHKR+I CG W+ QN+ A+GS+D+QI++ ++ G DQV Sbjct: 1 MHVFFSVDQRHHGVGRVKYAWDPSGIYLASTGMSRVVHIFNRTGELVDQIVP-PSPSICTHLEWGGKSLQLAIAQANSPIVLLWSAATQSTSTVDINLKEITLLRWNKPTEADGSNDTLAIGTSRGHVLLYEASCARLSSAMSKHKRKIVCGDWNTQNEFAFGSEDRQITICAKDGSTIDQV 181
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: A0A0W8C3V0_PHYNI (WD repeat-containing protein 19 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C3V0_PHYNI) HSP 1 Score: 150 bits (379), Expect = 3.750e-42 Identity = 76/175 (43.43%), Postives = 104/175 (59.43%), Query Frame = 1 Query: 1 MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSKTGDYLALGTGKGTMCIYHRRTNEKA*AHVKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQ 525 M LF + ++ HG GPV+FAWHP GT LAT+G N +VHIF G+ H L T+ ALEWD G +LAI Q SSVV LW T ++D +KD TF WSK G LA+GT KG + +Y + T + KH RRI CG+W+ ++L G +D+ ++V++ G +Q Sbjct: 1 MKKLFKLASKFHGVGPVVFAWHPNGTFLATAGKNGLVHIFDRQGEQ-HDEIGLDLTAPVVALEWDTEGSTLAILQQGSSVVPLWDNGTRSTLSLDTNLKDPTFARWSKEGSLLAVGTQKGNLVLYSKITRKLVPVVGKHSRRILCGSWNGDDKLVLGGEDRMLTVSNPQGDTIEQ 174
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: A0A0W8CAX8_PHYNI (WD repeat-containing protein 19 n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CAX8_PHYNI) HSP 1 Score: 150 bits (379), Expect = 3.510e-41 Identity = 76/175 (43.43%), Postives = 104/175 (59.43%), Query Frame = 1 Query: 1 MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSKTGDYLALGTGKGTMCIYHRRTNEKA*AHVKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQ 525 M LF + ++ HG GPV+FAWHP GT LAT+G N +VHIF G+ H L T+ ALEWD G +LAI Q SSVV LW T ++D +KD TF WSK G LA+GT KG + +Y + T + KH RRI CG+W+ ++L G +D+ ++V++ G +Q Sbjct: 1 MKKLFKLASKFHGVGPVVFAWHPNGTFLATAGKNGLVHIFDRQGEQ-HDEIGLDLTAPVVALEWDTEGSTLAILQQGSSVVPLWDNGTRSTLSLDTNLKDPTFARWSKEGSLLAVGTQKGNLVLYSKITRKLVPVVGKHSRRILCGSWNGDDKLVLGGEDRMLTVSNPQGDTIEQ 174
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: A0A7S3UWM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWM9_HETAK) HSP 1 Score: 145 bits (365), Expect = 4.950e-41 Identity = 65/125 (52.00%), Postives = 90/125 (72.00%), Query Frame = 1 Query: 1 MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSKTGDYLALGTGKGTMCIY 375 M+PLF+VD+RHHGKG V+FAWHP GT +A++G++R+V IF HG+L+ + P+ S CTALEWD G LAI QANS VV+L+ + + +D G+KD+TF+ WS G LALG+ KG++ Y Sbjct: 20 MEPLFIVDSRHHGKGSVLFAWHPLGTYIASTGTSRVVQIFDTHGKLIDQVVP-PSASICTALEWDSTGEILAITQANSPVVVLYSLQNHQQTQLDAGIKDITFIKWSSFGSKLALGSSKGSVLFY 143
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: A0A0P1AD58_PLAHL (WD40 repeat-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AD58_PLAHL) HSP 1 Score: 151 bits (381), Expect = 1.860e-40 Identity = 78/176 (44.32%), Postives = 116/176 (65.91%), Query Frame = 1 Query: 10 LFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKT-RAVDVGVKDVTFVSWSKTGD--YLALGTGKGTMCIYHRRTNEKA*AHVKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQV 528 +F VDARHHG GPV +AW PQG +A+SG++R+VHIF+ G+L+ I P+ S CT LEW G LAI QANS+ ++LW ++ + + V++ KD++F+ WSK+ LA+GT +G + IY K KHKRRI CG W+ +++ A+GS+D+QI++ +G+ DQV Sbjct: 4 IFSVDARHHGVGPVKYAWDPQGEYVASSGTSRVVHIFSRRGKLIDQIVP-PSPSLCTLLEWSNDGEILAIVQANSASLVLWDPKKIQHHQLVELPCKDISFIKWSKSPGSLLLAIGTNRGQVYIYDYSKGTKRQVTSKHKRRILCGDWNLKDKFAFGSEDRQITICLPSGRTFDQV 178
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Match: A0A8J5XK65_DIALT (Uncharacterized protein n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XK65_DIALT) HSP 1 Score: 153 bits (387), Expect = 8.820e-40 Identity = 72/172 (41.86%), Postives = 109/172 (63.37%), Query Frame = 1 Query: 10 LFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIKSLPTTSACTALEWDPLGLSLAIAQANSSVVLLWFTRQWKTRAVDVGVKDVTFVSWSKTGDYLALGTGKGTMCIYHRRTNEKA*AHVKHKRRINCGAWSYQNQLAYGSDDKQISVTSETGQIQDQ 525 +F V +G GPV+FAWHP G+ LA +G++R+V++ G+ + +P C AL+WD G LA+ Q +S++V LW Q KT +D +KD+TF+ WS TG LA+GT KG++ +Y+RRT +K KH +RI CGAW+ N+LA S+DKQ+++++ G Q Sbjct: 13 VFTVAKELNGPGPVLFAWHPDGSYLACAGTSRIVNVSNRQGE---AVAEIPLQGQCLALDWDKDGEVLAVLQRDSAIVPLWDAHQHKTSHLDTSLKDLTFLKWSLTGPQLAVGTAKGSLLLYNRRTLKKVPILGKHVKRITCGAWNADNKLALASEDKQVTISNGDGDTLSQ 181 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10027.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10027.46.1 >prot_Ecto-sp13_S_contig10027.46.1 ID=prot_Ecto-sp13_S_contig10027.46.1|Name=mRNA_Ecto-sp13_S_contig10027.46.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp MDPLFVVDARHHGKGPVIFAWHPQGTLLATSGSNRMVHIFTCHGQLLHTIback to top mRNA from alignment at Ecto-sp13_S_contig10027:3114..6022+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10027.46.1 ID=mRNA_Ecto-sp13_S_contig10027.46.1|Name=mRNA_Ecto-sp13_S_contig10027.46.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10027:3114..6022+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10027:3114..6022+ >mRNA_Ecto-sp13_S_contig10027.46.1 ID=mRNA_Ecto-sp13_S_contig10027.46.1|Name=mRNA_Ecto-sp13_S_contig10027.46.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10027:3114..6022+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |