mRNA_Ecto-sp13_S_contig10025.44.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: A0A6H5KYR4_9PHAE (V-type proton ATPase subunit a n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR4_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.810e-43 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEV 216 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEV Sbjct: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEV 72
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: D7FPY6_ECTSI (V-type proton ATPase subunit a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY6_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.540e-39 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEV 216 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEV Sbjct: 84 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEV 155
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: A0A6U2Q738_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2Q738_9STRA) HSP 1 Score: 123 bits (309), Expect = 4.420e-34 Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEE 213 MA+WFRSE+M YVS+IVNEDAAH C+SDLGKLG++QFTDLNP+LT FQRRYV+Y+KR DELERKL +FG E Sbjct: 1 MAKWFRSEEMEYVSLIVNEDAAHQCLSDLGKLGVLQFTDLNPDLTPFQRRYVSYVKRCDELERKLRYFGNE 71
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: A0A7S4JK70_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JK70_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.220e-33 Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFG 207 MARWFRSE+M Y+S+IVNEDAAH C++DLG+LG+IQFTDLNP+LT FQRRYV+Y+KR DELERKL FF Sbjct: 1 MARWFRSEEMEYISLIVNEDAAHDCLADLGRLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFA 69
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: A0A835ZAQ4_9STRA (V-type proton ATPase subunit a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ4_9STRA) HSP 1 Score: 129 bits (324), Expect = 3.400e-33 Identity = 59/72 (81.94%), Postives = 67/72 (93.06%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEV 216 MA WFRSEDM YVS+I+NEDAAH+CISDLGKLG++QFTDLNPELT FQRRYV +IKRIDELERK+ FFGEE+ Sbjct: 1 MASWFRSEDMTYVSLIMNEDAAHSCISDLGKLGVVQFTDLNPELTPFQRRYVNFIKRIDELERKIKFFGEEI 72
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: K0RXJ3_THAOC (V-type proton ATPase subunit a n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXJ3_THAOC) HSP 1 Score: 119 bits (299), Expect = 1.440e-32 Identity = 54/71 (76.06%), Postives = 62/71 (87.32%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEE 213 MARWFRSE M Y+S+IVNEDAAH C++DLGKL IQFTDLNP+LT FQRRYV+Y++R DELERKL FFG E Sbjct: 1 MARWFRSEHMEYISLIVNEDAAHDCLADLGKLSAIQFTDLNPDLTPFQRRYVSYVRRCDELERKLRFFGSE 71
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: A0A7S1BU79_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BU79_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.030e-31 Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEE 213 MARWFRSE M Y+S+IVNEDAAH C+SDLG+LGMIQFTDLNP+LT FQRRYV+Y+KR DELERKL FFG E Sbjct: 1 MARWFRSEPMEYISLIVNEDAAHDCLSDLGQLGMIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFGSE 71
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: A0A7S2IB47_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IB47_9STRA) HSP 1 Score: 118 bits (296), Expect = 1.510e-31 Identity = 54/71 (76.06%), Postives = 62/71 (87.32%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEE 213 M+RWFRSE M Y+S+IVN DAAH C+SDLGKLG+IQFTDLNPELT FQRRYV+Y+KR DELERKL +F E Sbjct: 28 MSRWFRSEPMEYISLIVNGDAAHDCLSDLGKLGVIQFTDLNPELTPFQRRYVSYVKRCDELERKLRYFSTE 98
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: B7G3I2_PHATC (V-type proton ATPase subunit a n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3I2_PHATC) HSP 1 Score: 121 bits (304), Expect = 1.700e-30 Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEEV 216 MARWFRSE M Y+S+IVNEDAAH C++DLGKLG+IQFTDLNP+LT FQRRYV+Y+KR DELERKL +F E+ Sbjct: 1 MARWFRSEPMEYISLIVNEDAAHDCLADLGKLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRYFSNEI 72
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Match: A0A7S3Q253_9STRA (V-type proton ATPase subunit a n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q253_9STRA) HSP 1 Score: 119 bits (299), Expect = 8.070e-30 Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1 Query: 1 MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRYVAYIKRIDELERKLAFFGEE 213 M+RWFRSE M Y+S+IVNEDAAH C++DLGKLG+IQFTDLNP+LT FQRRYV+Y+KR DELERKL FF E Sbjct: 1 MSRWFRSEPMEYISLIVNEDAAHDCLADLGKLGVIQFTDLNPDLTPFQRRYVSYVKRCDELERKLRFFAGE 71 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10025.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10025.44.1 >prot_Ecto-sp13_S_contig10025.44.1 ID=prot_Ecto-sp13_S_contig10025.44.1|Name=mRNA_Ecto-sp13_S_contig10025.44.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp MARWFRSEDMAYVSIIVNEDAAHTCISDLGKLGMIQFTDLNPELTAFQRRback to top mRNA from alignment at Ecto-sp13_S_contig10025:1626..1841+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10025.44.1 ID=mRNA_Ecto-sp13_S_contig10025.44.1|Name=mRNA_Ecto-sp13_S_contig10025.44.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10025:1626..1841+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10025:1626..1841+ >mRNA_Ecto-sp13_S_contig10025.44.1 ID=mRNA_Ecto-sp13_S_contig10025.44.1|Name=mRNA_Ecto-sp13_S_contig10025.44.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10025:1626..1841+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |