mRNA_Ecto-sp13_S_contig1002.40.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1002.40.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE) HSP 1 Score: 652 bits (1682), Expect = 4.200e-227 Identity = 325/349 (93.12%), Postives = 340/349 (97.42%), Query Frame = 3 Query: 9 MYTKGLSSLALLLIPGACHGLVETCDDLLAAFEQTKTEDVVVEMYPFADIECDTFTNMTMTSNSLTVSSSENLDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGRGGGIYNLGKVNIKGDSRFEEISASDGVAIYNGEGATFNFRSGARAFFRDLNNRDSEGSALVNLGFFKFSGPALFFDAELPVIVAMDNSETIISEDSAFWTWDESPGDALTVNDGADFSLPDSVTFVGFD 1055 MYTKGLSSLALLLIPGACHGL+ETCDDLLAAFEQT+TEDVVVEM+PFADIEC+TFTNMTMTSNSLTVSSSEN+DNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEE +LMVDGGAVYVGEGSTVRFLNDVQM+D+ IINERDEDSDF+SFVRSGGCVWTAGYFRVDGEATFTGCDI GAGESPPGPGGAVYVGETGSVLFN GVTIT+T ITDDFGG GGGIYNLGKVNIKGDSRFE+ISAS GVAIYNGEGATFNFRSGARAFF+DLNNRDSEGSAL N GFFKFSGPALFFDAELPVIVA+DNSETIISEDSAFWTWDESPGDAL+VNDGADF+LPDSVTFVGFD Sbjct: 82 MYTKGLSSLALLLIPGACHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECETFTNMTMTSNSLTVSSSENIDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEETDLMVDGGAVYVGEGSTVRFLNDVQMQDIAIINERDEDSDFSSFVRSGGCVWTAGYFRVDGEATFTGCDISGAGESPPGPGGAVYVGETGSVLFNGGVTITDTHITDDFGGSGGGIYNLGKVNIKGDSRFEDISASSGVAIYNGEGATFNFRSGARAFFKDLNNRDSEGSALFNRGFFKFSGPALFFDAELPVIVAVDNSETIISEDSAFWTWDESPGDALSVNDGADFTLPDSVTFVGFD 430
BLAST of mRNA_Ecto-sp13_S_contig1002.40.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI) HSP 1 Score: 606 bits (1563), Expect = 7.670e-211 Identity = 307/349 (87.97%), Postives = 317/349 (90.83%), Query Frame = 3 Query: 9 MYTKGLSSLALLLIPGACHGLVETCDDLLAAFEQTKTEDVVVEMYPFADIECDTFTNMTMTSNSLTVSSSENLDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGRGGGIYNLGKVNIKGDSRFEEISASDGVAIYNGEGATFNFRSGARAFFRDLNNRDSEGSALVNLGFFKFSGPALFFDAELPVIVAMDNSETIISEDSAFWTWDESPGDALTVNDGADFSLPDSVTFVGFD 1055 MYTKGLSSLALLL+PG CHGL+ETCDDLLAAFEQT+TEDVVVEM+PFADIECDTFTNMTMTSN+LT LFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGG+GGGIYNLGKVNIKGDSRFEEISAS GVAIYNGEGATFNFR+GA AFFRDLNNRDSEGSALVNLGFFKFSGPA FFDAELPVIVAMDNSETI+SEDSAFWTWDESPGDALTVN+GADF+LPDSVTFVGFD Sbjct: 1 MYTKGLSSLALLLMPGTCHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECDTFTNMTMTSNTLT----------------------------LFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGKGGGIYNLGKVNIKGDSRFEEISASAGVAIYNGEGATFNFRNGAGAFFRDLNNRDSEGSALVNLGFFKFSGPAFFFDAELPVIVAMDNSETILSEDSAFWTWDESPGDALTVNEGADFTLPDSVTFVGFD 321
BLAST of mRNA_Ecto-sp13_S_contig1002.40.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI) HSP 1 Score: 506 bits (1304), Expect = 2.790e-171 Identity = 253/349 (72.49%), Postives = 299/349 (85.67%), Query Frame = 3 Query: 9 MYTKGLSSLALLLIPGACHGLVETCDDLLAAFEQTKTEDVVVEMYPFADIECDTFTNMTMTSNSLTVSSSENLDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGRGGGIYNLGKVNIKGDSRFEEISASDGVAIYNGEGATFNFRSGARAFFRDLNNRDSEGSALVNLGFFKFSGPALFFDAELPVIVAMDNSETIISEDSAFWTWDESPGDALTVNDGADFSLPDSVTFVGFD 1055 M+++ +S +LL + G HGL+ETC+DL AAF T+T+DV+ E++PF DIEC+TFTNMTMTSN+LT++SSENLDNF GSSSL NVRL VTNGA+L WET+V F GDEE ELMVDGGAV+VGEGSTV FLND++M D+ IINERDEDSDFASFVRSGGCVWTAG F VDGEATFT CDI GAGESPPGPGGA+YVG TGSV FN+GV I+ET ITDDFGG+GGGIYNLG+V I GDSRFE+ISAS GVAIYNGEGA F F + A AFFRDLNNRDS GS L NLG+F+FSGPALF +A+ PVIVA + S+TI+SE+SAFWT+DE G+AL+V++ ADF++P SV FVGF+ Sbjct: 1 MFSEIVSPFSLLFLVGVAHGLIETCEDLQAAFNLTQTQDVIDEIHPFQDIECETFTNMTMTSNTLTLNSSENLDNFFGSSSLTNVRLVVTNGAELIWETHVNFIGDEEVELMVDGGAVFVGEGSTVHFLNDLEMEDIRIINERDEDSDFASFVRSGGCVWTAGSFIVDGEATFTRCDITGAGESPPGPGGAIYVGATGSVSFNQGVAISETFITDDFGGQGGGIYNLGEVTIAGDSRFEDISASSGVAIYNGEGAEFYFTNDASAFFRDLNNRDSVGSGLTNLGYFEFSGPALFVEADAPVIVATETSQTILSENSAFWTFDEEFGEALSVDEAADFTIPASVVFVGFE 349
BLAST of mRNA_Ecto-sp13_S_contig1002.40.1 vs. uniprot
Match: D7G0Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q4_ECTSI) HSP 1 Score: 483 bits (1244), Expect = 3.130e-162 Identity = 251/350 (71.71%), Postives = 290/350 (82.86%), Query Frame = 3 Query: 9 MYTKGLSSLALLLIPGACHGLVETCDDLLAAFEQTKTEDVVVEMYPFADIECDTFTNMTMTSNSLTVSSSENLDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGRGGGIYNLGKVNIKGDSRFEEISASDGVAIYNGEGATFNFRSGARAFFRDLNNRDSEGSALVNLGFFKFSGPALFFDAELPVIVAMDNSETIISEDSAFWTW--DESPGDALTVNDGADFSLPDSVTFVGF 1052 MYTK SSLALL+IPG GL+ETC+DL AAFE T+T+DVV E+ F DIEC FTNMTMTSN+LT++S+E+L SGS+SL+NVRL+VTNGAKL WET+V F GDEE E V+GG V+VGEGSTVRFLNDVQ+RDV I NERD DSD A FVR GGCVWTAG+FRVDGEATFT C IIG GESPPG GGAV+V TGSVLFN+GV I++T IT+D GG GGGI+NLGKVNIKGDSRFEE+SA G AI+NGE A+FNFR+GA AFFRDL+NRDSEGSALVNLGFFKFSGP LF DAE PVIVA + S TIIS DSAFW + D+ G+A++V D A+ S+P SV+FVGF Sbjct: 1 MYTKLFSSLALLVIPGVARGLIETCEDLQAAFELTQTQDVVDEISTFGDIECPMFTNMTMTSNTLTLNSAEDLSITSGSTSLINVRLEVTNGAKLVWETSVFFLGDEEVENNVNGGGVFVGEGSTVRFLNDVQIRDVRITNERDGDSDNAVFVRDGGCVWTAGFFRVDGEATFTSCAIIGTGESPPGSGGAVFVDATGSVLFNQGVAISDTFITNDGGGDGGGIFNLGKVNIKGDSRFEELSARSGAAIFNGEDASFNFRNGASAFFRDLSNRDSEGSALVNLGFFKFSGPVLFVDAEAPVIVATEGSTTIISRDSAFWMFENDDVTGEAISVADSAEVSIPGSVSFVGF 350
BLAST of mRNA_Ecto-sp13_S_contig1002.40.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI) HSP 1 Score: 287 bits (735), Expect = 2.890e-86 Identity = 173/370 (46.76%), Postives = 223/370 (60.27%), Query Frame = 3 Query: 24 LSSLALLLIPGA-CHGLVETCDDLLAAFEQTKTEDVVVEMYPFADIECDTFTNMTMTSNSLTVSSSENLDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGRGGGIYNLGKVNIKGDSRFEEISASDGVAIYNGEGATFNFRSGARAFFRDLNNRDSEGSALVNLGFFKFSGPALFFDAELPVIVAMDNSETIISEDSAFWTWDESPGDALTVNDGADFSLPDSVTFVGFD*QQPDCSSGGDVVG-GNVRMPRLSD 1127 +S+ ALLL+ G+ C G +ETC DLL AF T ++DVVVE+ P DI CD+FT M+M++NSLTV + D SGS L VR +VT+GAKL W F G E + V+GGAVYVGEGS+ RF + + +V + + +E SDFAS+ GGCV+ GYFRV+G A+F GC+ G GES PGPGG +YVGETGSVLF VT+ + SI DD G GGGIYNLGKVNIKG++ F+ + A G AI+NG GA F F+ GA A F D + D G A+ N G+FK SGPA + P V + T +SE S F DG+D+ P+ + FV GG + G G V +D Sbjct: 7 ISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCDSFTTMSMSANSLTVMTP---DGQSGSVGLNEVRFEVTDGAKLLWYPGASFTGTEYQD--VNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFASYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVF------------NGDGSDY--PEPIMFV---------MEGGRLTGVGKVTFDNAAD 348
BLAST of mRNA_Ecto-sp13_S_contig1002.40.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE) HSP 1 Score: 285 bits (730), Expect = 1.120e-82 Identity = 169/346 (48.84%), Postives = 216/346 (62.43%), Query Frame = 3 Query: 24 LSSLALLLIPGA-CHGLVETCDDLLAAFEQTKTEDVVVEMYPFADIECDTFTNMTMTSNSLTVSSSENLDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCV----WTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGRGGGIYNLGKVNIKGDSRFEEISASDGVAIYNGEGATFNFRSGARAFFRDLNNRDSEGSALVNLGFFKFSGPALFFDAELPVIVAMDNSETIISEDSAF-WTWDESPGDALTVNDGADFSLPDSVTF 1043 +S+ ALLL+ G+ C G VETC DLL AF T ++DVVVE+ P DI CD FT M+M++NSLTV+++ D SGS L VR +VT+GAKLFW F + + V+GGAVYVGEGST RF + + +V + + +E SDFAS+ GGCV + GYFRV+G A+F GC+ G GES PGPGG +YVGETGSVLF VT+ + SI DD G GGGIYNLGKVNIKG++ F+ + A G AI+NG GA F F+ GA A F D + D G A+ N G+FK SGPA + P V + T +SE S F E P + V +G + VTF Sbjct: 237 ISAAALLLVSGSVCRGQVETCQDLLDAFALTASQDVVVEIQPGQDITCDNFTTMSMSANSLTVTAT---DGQSGSVGLNEVRFEVTDGAKLFWHPGASFTETDYQD--VNGGAVYVGEGSTARFYDTLTTSEVGVRSVPEEGSDFASYELIGGCVRAYTYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNALFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGTGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGYEYPEPIILVREGGRLTGVGKVTF 577
BLAST of mRNA_Ecto-sp13_S_contig1002.40.1 vs. uniprot
Match: D8LG63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG63_ECTSI) HSP 1 Score: 246 bits (627), Expect = 5.310e-73 Identity = 121/167 (72.46%), Postives = 141/167 (84.43%), Query Frame = 3 Query: 408 MRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGRGGGIYNLGKVNIKGDSRFEEISASDGVAIYNGEGATFNFRSGARAFFRDLNNRDSEGSALVNLGFFKFSGPALFFDAELP 908 MRDV IINE DEDSD+AS+ SGGCV TAG F V+G+ATFTGC+ +GAGES PGPGGA++V ETGSV F+EGVTI ETSITDDFGG+GGGIYNLG+VN+ G SRFE+ISAS GVA+YNGEGA F +GA A FRDL+NRDS GSAL LG+F+FSGPALF +A+ P Sbjct: 1 MRDVGIINETDEDSDYASYQHSGGCVRTAGTFTVNGDATFTGCESVGAGESAPGPGGAIFVSETGSVSFSEGVTIMETSITDDFGGQGGGIYNLGEVNVAGGSRFEDISASSGVAVYNGEGAQLRFTNGATACFRDLSNRDSVGSALYYLGYFEFSGPALFVEADTP 167 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1002.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1002.40.1 >prot_Ecto-sp13_S_contig1002.40.1 ID=prot_Ecto-sp13_S_contig1002.40.1|Name=mRNA_Ecto-sp13_S_contig1002.40.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp MYTKGLSSLALLLIPGACHGLVETCDDLLAAFEQTKTEDVVVEMYPFADIback to top mRNA from alignment at Ecto-sp13_S_contig1002:8540..10970+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1002.40.1 ID=mRNA_Ecto-sp13_S_contig1002.40.1|Name=mRNA_Ecto-sp13_S_contig1002.40.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2431bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1002:8540..10970+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1002:8540..10970+ >mRNA_Ecto-sp13_S_contig1002.40.1 ID=mRNA_Ecto-sp13_S_contig1002.40.1|Name=mRNA_Ecto-sp13_S_contig1002.40.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1002:8540..10970+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |