mRNA_Ecto-sp13_S_contig10012.31.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A6H5JP59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP59_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 6.160e-16 Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 Query: 7 QALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV 120 +ALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV Sbjct: 558 EALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV 595
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: D8LTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA1_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 2.050e-15 Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 Query: 7 QALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV 120 +ALFGMGYMHQMGKGVPQD FLAKRYFDQAALVSSDAV Sbjct: 381 EALFGMGYMHQMGKGVPQDFFLAKRYFDQAALVSSDAV 418
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A1D1W2R9_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1W2R9_RAMVA) HSP 1 Score: 53.5 bits (127), Expect = 4.060e-7 Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 Query: 1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117 S QALF +GYMHQ G GV QDL LAKR++D+A S+DA Sbjct: 555 SPQALFNLGYMHQQGLGVKQDLHLAKRFYDRALETSADA 593
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A2A6C177_PRIPA (Mrps-5 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6C177_PRIPA) HSP 1 Score: 53.1 bits (126), Expect = 5.540e-7 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 Query: 1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV 120 + QA+F +GYMH+ G+G+ QDL+LAKRY+D A S DAV Sbjct: 682 TAQAMFNLGYMHERGEGMTQDLYLAKRYYDSAMEHSPDAV 721
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A4W3ITR0_CALMI (Fibronectin type-II domain-containing protein n=7 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3ITR0_CALMI) HSP 1 Score: 53.1 bits (126), Expect = 5.550e-7 Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 Query: 1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117 S QA+F +GYMH+ G G+ QD++LAKR++D AA S DA Sbjct: 674 SAQAMFNLGYMHEKGLGIKQDIYLAKRFYDMAAETSPDA 712
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: UPI00140265A9 (protein sel-1 homolog 1 isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI00140265A9) HSP 1 Score: 53.1 bits (126), Expect = 5.550e-7 Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 Query: 1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117 S QA+F +GYMH+ G G+ QD++LAKR++D AA S DA Sbjct: 665 SAQAMFNLGYMHEKGLGIKQDIYLAKRFYDMAAETSPDA 703
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A401S1C2_CHIPU (Fibronectin type-II domain-containing protein n=7 Tax=Galeoidea TaxID=119195 RepID=A0A401S1C2_CHIPU) HSP 1 Score: 53.1 bits (126), Expect = 5.550e-7 Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 Query: 1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117 S QA+F +GYMH+ G G+ QD++LAKR++D AA S DA Sbjct: 649 SAQAMFNLGYMHEKGLGIKQDIYLAKRFYDMAAETSPDA 687
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A4W3IWM0_CALMI (Fibronectin type-II domain-containing protein n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3IWM0_CALMI) HSP 1 Score: 53.1 bits (126), Expect = 5.550e-7 Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 Query: 1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117 S QA+F +GYMH+ G G+ QD++LAKR++D AA S DA Sbjct: 639 SAQAMFNLGYMHEKGLGIKQDIYLAKRFYDMAAETSPDA 677
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A1W0WTG4_HYPDU (Protein sel-1-like protein 1 n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WTG4_HYPDU) HSP 1 Score: 53.1 bits (126), Expect = 5.560e-7 Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 Query: 1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117 S QALF +GYMHQ G GV QDL LAKR++D+A S+DA Sbjct: 548 SPQALFNLGYMHQRGYGVKQDLHLAKRFYDRALETSADA 586
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A152A3B0_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A3B0_9MYCE) HSP 1 Score: 52.4 bits (124), Expect = 1.040e-6 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 Query: 10 ALFGMGYMHQMGKGVPQDLFLAKRYFDQA 96 ALF +GYMHQ GKG PQDLFLAKRY+D + Sbjct: 696 ALFNLGYMHQFGKGRPQDLFLAKRYYDMS 724 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10012.31.1 >prot_Ecto-sp13_S_contig10012.31.1 ID=prot_Ecto-sp13_S_contig10012.31.1|Name=mRNA_Ecto-sp13_S_contig10012.31.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp MGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV*back to top mRNA from alignment at Ecto-sp13_S_contig10012:278..400- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10012.31.1 ID=mRNA_Ecto-sp13_S_contig10012.31.1|Name=mRNA_Ecto-sp13_S_contig10012.31.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10012:278..400- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10012:278..400- >mRNA_Ecto-sp13_S_contig10012.31.1 ID=mRNA_Ecto-sp13_S_contig10012.31.1|Name=mRNA_Ecto-sp13_S_contig10012.31.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10012:278..400- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |