mRNA_Ecto-sp13_S_contig10009.26.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10009.26.1
Unique Name	mRNA_Ecto-sp13_S_contig10009.26.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Match: A0A7S1HGX3_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HGX3_HEMAN)

HSP 1 Score: 70.9 bits (172), Expect = 4.660e-11
Identity = 64/216 (29.63%), Postives = 90/216 (41.67%), Query Frame = 1

Query:   10 RAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVLQMHTTMCGRGCRRARTPPGRVVQSHDPTKRLSQGG-LRGASG----DTPTAGTRTSRQQDQQQIHSPVGSVATRK--YSVFPDDEKACDEVSRFNQSGDERSTGDTDFATIRGDGDSGGVSTAVARSCDGRLACSNCKRRFSSDRVGVHEEICKRVNTTESVRASTNKS 636
            RAVTC++C Q FF ASL FH+K C  K   + +PC  CN  +P   L  H   C       R     + ++     RLS GG LR  S     DTP       R  ++  I   +   A  K  ++ + DD      VS                A++ GDG              GR+ C  C R+F++DR+ VH+ IC+  +     R + N S
Sbjct:    5 RAVTCQMCGQGFFKASLPFHLKQCQIKSAAVPIPCPGCNVEYPRGELTSHMASC-------RQAKAHLARTPSKATRLSLGGSLRETSSHMQYDTPP------RTPERATIPRRMPKSAPGKPFHAEYDDDLATSMGVS----------------ASLGGDG--------------GRIPCQVCGRQFNADRIAVHQRICRNAHEGSERRRTFNSS 177

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Match: A0A7J6PGT2_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PGT2_PEROL)

HSP 1 Score: 67.0 bits (162), Expect = 6.250e-9
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1

Query:    4 HRRAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVLQMHTTMC 171
            HRRAV C  C Q FFP SL+FH+K C  K +H+ELPC  C+     + L+ HTT C
Sbjct:    9 HRRAVPCPSCGQHFFPQSLRFHLKSCVVKQQHVELPCPFCDTPVKRSELENHTTTC 64

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Match: A0A7S4NRQ2_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NRQ2_GUITH)

HSP 1 Score: 63.2 bits (152), Expect = 7.250e-9
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 1

Query:   10 RAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVLQMHTTMCGR 177
            R+VTC +C QQFF ASL FHVK C  K + I +PC  C+  FP   L+ H + C R
Sbjct:    9 RSVTCTMCGQQFFKASLPFHVKQCRLKTDAIPIPCPGCDREFPQRELRSHMSRCAR 64

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Match: A0A7J6U944_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6U944_PEROL)

HSP 1 Score: 67.0 bits (162), Expect = 7.790e-9
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1

Query:    4 HRRAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVLQMHTTMC 171
            HRRAV C  C Q FFP SL+FH+K C  K +H+ELPC  C+     + L+ HTT C
Sbjct:    9 HRRAVPCPSCGQHFFPQSLRFHLKSCVVKQQHVELPCPFCDTPVKRSELENHTTTC 64

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Match: A0A7J6LKF5_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LKF5_PEROL)

HSP 1 Score: 67.0 bits (162), Expect = 7.860e-9
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1

Query:    4 HRRAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVLQMHTTMC 171
            HRRAV C  C Q FFP SL+FH+K C  K +H+ELPC  C+     + L+ HTT C
Sbjct:    9 HRRAVPCPSCGQHFFPQSLRFHLKSCVVKQQHVELPCPFCDTPVKRSELENHTTTC 64

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Match: A0A7S3IZW6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3IZW6_9SPIT)

HSP 1 Score: 61.2 bits (147), Expect = 1.890e-8
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1

Query:   10 RAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVLQMHTTMC 171
            RA+TC++C Q+FFPAS+KFH K C KK E     C HC ++     L  H  +C
Sbjct:   10 RAITCKICNQKFFPASMKFHKKECQKKFEGTHSKCTHCGQKIFTPELTRHEEIC 63

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Match: A0A2A9MG06_9APIC (Uncharacterized protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MG06_9APIC)

HSP 1 Score: 65.5 bits (158), Expect = 2.190e-8
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1

Query:    1 MHRRAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVLQMH 159
            MH+RA+ C +C  +FFPASL FH KVCAKK  +I LPC +C+E  P   L  H
Sbjct:    1 MHQRAIVCTMCGGKFFPASLGFHQKVCAKKQGYILLPCPYCSEEVPKPELDEH 53

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Match: A0A7J6MXE7_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MXE7_PERCH)

HSP 1 Score: 63.9 bits (154), Expect = 7.980e-8
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 1

Query:    4 HRRAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVLQMHTTMC 171
            HRRAV C  C Q FFP SL+FH+K C  K +H+ELPC  C+       L+ HT+ C
Sbjct:    9 HRRAVPCPSCGQNFFPQSLRFHLKSCIVKQQHVELPCPFCDTPVKRHNLEAHTSSC 64

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Match: A0A125YSA8_TOXGV (Uncharacterized protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A125YSA8_TOXGV)

HSP 1 Score: 62.4 bits (150), Expect = 2.210e-7
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1

Query:    1 MHRRAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVLQMH 159
            MH+RAV C +C  +FFPASL FH K CAKK  +  LPC +C+   P   L  H
Sbjct:    1 MHQRAVVCTMCGGKFFPASLSFHQKACAKKQSYALLPCSYCDTEIPKPDLDRH 53

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10009.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A7S1HGX3_HEMAN	4.660e-11	29.63	Hypothetical protein (Fragment) n=2 Tax=Hemiselmis...	[more]
A0A7J6PGT2_PEROL	6.250e-9	51.79	Uncharacterized protein n=2 Tax=Perkinsus olseni T...	[more]
A0A7S4NRQ2_GUITH	7.250e-9	50.00	Hypothetical protein (Fragment) n=1 Tax=Guillardia...	[more]
A0A7J6U944_PEROL	7.790e-9	51.79	Uncharacterized protein n=1 Tax=Perkinsus olseni T...	[more]
A0A7J6LKF5_PEROL	7.860e-9	51.79	Uncharacterized protein n=2 Tax=Perkinsus olseni T...	[more]
A0A7S3IZW6_9SPIT	1.890e-8	46.30	Hypothetical protein (Fragment) n=1 Tax=Euplotes h...	[more]
A0A2A9MG06_9APIC	2.190e-8	54.72	Uncharacterized protein n=1 Tax=Besnoitia besnoiti...	[more]
A0A7J6MXE7_PERCH	7.980e-8	50.00	Uncharacterized protein n=1 Tax=Perkinsus chesapea...	[more]
A0A125YSA8_TOXGV	2.210e-7	50.94	Uncharacterized protein n=15 Tax=Toxoplasma gondii...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10009:4066..5977+
coding sequence from alignment at Ecto-sp13_S_contig10009:4066..5977+

protein sequence of mRNA_Ecto-sp13_S_contig10009.26.1

>prot_Ecto-sp13_S_contig10009.26.1 ID=prot_Ecto-sp13_S_contig10009.26.1|Name=mRNA_Ecto-sp13_S_contig10009.26.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp
MHRRAVTCRLCQQQFFPASLKFHVKVCAKKLEHIELPCDHCNERFPCTVL
QMHTTMCGRGCRRARTPPGRVVQSHDPTKRLSQGGLRGASGDTPTAGTRT
SRQQDQQQIHSPVGSVATRKYSVFPDDEKACDEVSRFNQSGDERSTGDTD
FATIRGDGDSGGVSTAVARSCDGRLACSNCKRRFSSDRVGVHEEICKRVN
TTESVRASTNKSKRGSYKTKRRQQASPASPTSCLDRRRLRSPVVGGRQAP
AVGRWARGRSLGRKQRRIRTHHTVDDAGDRP

mRNA from alignment at Ecto-sp13_S_contig10009:4066..5977+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10009.26.1 ID=mRNA_Ecto-sp13_S_contig10009.26.1|Name=mRNA_Ecto-sp13_S_contig10009.26.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10009:4066..5977+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGCAGAGCAGTGACGTGCCGGCTCTGCCAACAGCAGTTCTTCCC
AGCCTCGCTCAAGTTCCACGTGAAGGTAACACATTGTTTCGTAGCACGAC
AGTAGACAACTGGGGGTGGGTGTGATGGTGCTGCAAATATTATTAGGAGA
GCTCTGTGACACAGGAACACCAGTGACAGTACTCACGCCCCCGTTCGTAC
AGAGTAGACTGGAATACAGTCTGCAAGCGCGTTTATGAAACAAACGCCAA
TTTCCGGTCCAGTCTCAAATTCTTTTTATGGGCTGAAAACTCAAAATGTG
CATTGTCCAATTGGTCTTGTCTATTTTCTTATTTTCGTGGAAATTTCATC
CTTTTCTGTATTGATTTAATAATCGCGGGGCGCTACAAAACTGTACAAAA
GTAGCCGTACGAATTGGTTGTATGCAAGGCTGCACCGACGACGCCCACAT
GGAACGAACGTCGGACTCCATATCTACTCGGGACGTGCTCGCTACAATAC
TGCATTCTTCTCTAAACTTGGTACACTGTAGGTGTGTGCGAAGAAACTGG
AGCACATCGAGCTACCGTGCGACCACTGCAACGAACGGTTTCCGTGTACG
GTCCTCCAGGTACGTACAGAAGCATTTTTGCAGAAGGAGCATACGTAGAC
GAGATCAGCACGCATGTCAATGTTTTCGTGGTGTCCATCCTAACTGTCCC
AGAACTCAGTCTACACCTTTTGGTATATGGCGCACGAGCCGGGGACACAC
CGGAGGAATTCTCCACACTTGCTCCTGCTGGGGTTCTTGCGACAATGTTG
AATTCGATAAGGGTTCAGCACTCATTTTTCCTTTTCGTCGTACGTACCAC
AAGGGCTGTTAAGTTCAAGTTGTGTGTGCTGTAGTTGGCAATGAGCACAT
CTCCCCACTCGTTGACGCGTTGCGCCTTGAATATGATTGCCAGTGTTTAC
AACGACTGCTCCGAAGCAGGTTTGTTTGTGTCATTCTACCATTGTGCGTG
CTAGAATGGTTAGTCCCAATTCTGCCCCCCTCATGAACGGAACCCTGCCG
TGCGAACACCTTTTTGAGTTCGGCAAAGCATCTCACTTGTTTCCCCCTCA
AGCACACCCCGTATCGATCTACGTTACCTTCTTTGCTTCCCCAGACACAT
GTGCTCTAGATGATTTCCACAGCGTGCTATTGATCCCTTGCACCATCATC
AAAACGTCTTTCTTGGCCTCAGATGCACACGACCATGTGCGGACGAGGTT
GTCGACGAGCAAGAACCCCTCCTGGTAGGGTTGTACAATCGCACGACCCC
ACGAAGCGGCTGTCGCAAGGCGGGCTACGTGGTGCTAGCGGCGACACCCC
TACGGCAGGAACAAGGACAAGTCGACAGCAAGACCAGCAACAGATTCATT
CCCCCGTAGGCTCTGTAGCCACAAGGAAATACAGCGTATTCCCAGACGAC
GAAAAAGCGTGTGATGAAGTTTCGCGATTCAACCAGTCCGGTGACGAGCG
AAGCACCGGCGACACTGATTTTGCAACCATCCGAGGTGATGGGGATAGCG
GAGGCGTTAGCACCGCCGTGGCAAGGTCGTGTGATGGGCGACTAGCCTGC
TCCAACTGCAAGCGTCGGTTTTCCTCAGACAGGGTAGGCGTCCATGAAGA
GATATGCAAGCGTGTCAACACAACGGAATCAGTTCGCGCCAGCACCAACA
AGAGCAAGAGAGGAAGCTACAAGACTAAACGACGCCAGCAGGCTTCGCCA
GCATCTCCTACGAGCTGCTTGGACAGGCGACGATTGAGAAGTCCTGTTGT
CGGTGGGAGACAGGCGCCAGCGGTAGGACGCTGGGCACGGGGACGCTCTT
TGGGTCGAAAGCAACGCCGCATCAGGACTCATCATACTGTTGATGATGCC
GGAGACAGACCG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10009:4066..5977+

>mRNA_Ecto-sp13_S_contig10009.26.1 ID=mRNA_Ecto-sp13_S_contig10009.26.1|Name=mRNA_Ecto-sp13_S_contig10009.26.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10009:4066..5977+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGCAGAGCAGTGACGTGCCGGCTCTGCCAACAGCAGTTCTTCCC
AGCCTCGCTCAAGTTCCACGTGAAGGTGTGTGCGAAGAAACTGGAGCACA
TCGAGCTACCGTGCGACCACTGCAACGAACGGTTTCCGTGTACGGTCCTC
CAGATGCACACGACCATGTGCGGACGAGGTTGTCGACGAGCAAGAACCCC
TCCTGGTAGGGTTGTACAATCGCACGACCCCACGAAGCGGCTGTCGCAAG
GCGGGCTACGTGGTGCTAGCGGCGACACCCCTACGGCAGGAACAAGGACA
AGTCGACAGCAAGACCAGCAACAGATTCATTCCCCCGTAGGCTCTGTAGC
CACAAGGAAATACAGCGTATTCCCAGACGACGAAAAAGCGTGTGATGAAG
TTTCGCGATTCAACCAGTCCGGTGACGAGCGAAGCACCGGCGACACTGAT
TTTGCAACCATCCGAGGTGATGGGGATAGCGGAGGCGTTAGCACCGCCGT
GGCAAGGTCGTGTGATGGGCGACTAGCCTGCTCCAACTGCAAGCGTCGGT
TTTCCTCAGACAGGGTAGGCGTCCATGAAGAGATATGCAAGCGTGTCAAC
ACAACGGAATCAGTTCGCGCCAGCACCAACAAGAGCAAGAGAGGAAGCTA
CAAGACTAAACGACGCCAGCAGGCTTCGCCAGCATCTCCTACGAGCTGCT
TGGACAGGCGACGATTGAGAAGTCCTGTTGTCGGTGGGAGACAGGCGCCA
GCGGTAGGACGCTGGGCACGGGGACGCTCTTTGGGTCGAAAGCAACGCCG
CATCAGGACTCATCATACTGTTGATGATGCCGGAGACAGACCG