mRNA_Ecto-sp13_S_contig100060.24.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: D7G8R2_ECTSI (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R2_ECTSI) HSP 1 Score: 145 bits (366), Expect = 4.040e-42 Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 Query: 1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMP+SRLGGNTYGRLGSVFDIPR Sbjct: 167 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPISRLGGNTYGRLGSVFDIPR 236
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A6H5L1F6_9PHAE (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F6_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.360e-40 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1 Query: 1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 HTYDIVNSKGDVTTTVVFGEVVMFHVF+HLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDI R Sbjct: 209 HTYDIVNSKGDVTTTVVFGEVVMFHVFTHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDISR 278
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: L1IE62_GUITC (Flavin_Reduct domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IE62_GUITC) HSP 1 Score: 96.7 bits (239), Expect = 7.150e-23 Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1 Query: 1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 H YD+ N++G VTTTVV GE+V FHV +L+ NGAGEGKPTVN + L P+SRLGG TYGR +VFD+PR Sbjct: 189 HQYDMKNAQGKVTTTVVIGEIVAFHVHEGVLEMNGAGEGKPTVNFDALKPLSRLGGCTYGRTTAVFDLPR 258
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A8J6C7I8_DIALT (Flavin_Reduct domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C7I8_DIALT) HSP 1 Score: 85.5 bits (210), Expect = 1.710e-18 Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1 Query: 1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 H +++ N+KG+V+ T++ GEVVM H+ + + + +GAG GKPTV + L PMSRLGGNTYGR S FD+PR Sbjct: 201 HRHEMRNAKGEVSATLILGEVVMIHLAAGVCELDGAGAGKPTVRFDALQPMSRLGGNTYGRTTSTFDLPR 270
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A7S4C094_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C094_CHRCT) HSP 1 Score: 82.8 bits (203), Expect = 1.750e-17 Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 H +++VN+ G VT+T+V GEVVM H S + +GAGEGKPT++ P+SRLGG+TYGR S+FD+PR Sbjct: 199 HRHEVVNASGVVTSTMVVGEVVMMHAASAVCNVDGAGEGKPTIDFAKFQPISRLGGDTYGRTLSMFDLPR 268
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A835ZDF3_9STRA (Flavin_Reduct domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF3_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.690e-15 Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1 Query: 1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 H Y++ N+ G TTTVV G+VVMFHV +L G KPTV+ + L P++RLGGNTYG + +VFD+PR Sbjct: 193 HKYEVKNAAGTDTTTVVIGQVVMFHVLEAVLDTVTHGPTKPTVHFDKLRPIARLGGNTYGIVNTVFDLPR 262
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: C1N2T0_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N2T0_MICPC) HSP 1 Score: 73.9 bits (180), Expect = 1.580e-14 Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 H+YD+ N+ G VT T + GEVVMFH+ H N EGKP V+ P+ RLGG+TYGR+GS +D+PR Sbjct: 138 HSYDVTNADGVVTATAIVGEVVMFHI--HEAVANVEWEGKPRVDMARYAPVCRLGGDTYGRVGSGYDLPR 205
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A7S0L4A2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L4A2_9EUKA) HSP 1 Score: 74.7 bits (182), Expect = 1.660e-14 Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1 Query: 7 YDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 ++I+N G T TVVFGEVV + ENGAGEGKPT+ + ++RLGGNTYGR+ S FD+ R Sbjct: 188 HEIINKAGVTTATVVFGEVVKVWAAKGVCDENGAGEGKPTIKFDNYRALARLGGNTYGRVTSTFDLDR 255
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A8J9WUW2_9CHLO (Uncharacterized protein YwrF n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WUW2_9CHLO) HSP 1 Score: 70.5 bits (171), Expect = 8.800e-13 Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 HTYD+ NSKG+VT T++ GEVV+ HV + + G G V + P+SRLGGNTY R+ +D+PR Sbjct: 212 HTYDVKNSKGEVTATIIIGEVVLVHVLEAVTGKTG--HGHIYVEFDKYAPVSRLGGNTYARITETYDLPR 279
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A2P6VCT5_9CHLO (Flavin reductase-FMN-binding domain containing n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VCT5_9CHLO) HSP 1 Score: 68.2 bits (165), Expect = 6.510e-12 Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210 H Y++ N+ GDVT T+V GEVVM HV + + +G K V+ E P+SRLGGNTY R +FD+PR Sbjct: 218 HNYEVKNAAGDVTGTIVIGEVVMMHVHEGVAGRSPSG--KLVVDIEKYKPVSRLGGNTYARTSGLFDLPR 285 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100060.24.1 >prot_Ecto-sp13_S_contig100060.24.1 ID=prot_Ecto-sp13_S_contig100060.24.1|Name=mRNA_Ecto-sp13_S_contig100060.24.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPback to top mRNA from alignment at Ecto-sp13_S_contig100060:9..218- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100060.24.1 ID=mRNA_Ecto-sp13_S_contig100060.24.1|Name=mRNA_Ecto-sp13_S_contig100060.24.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100060:9..218- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100060:9..218- >mRNA_Ecto-sp13_S_contig100060.24.1 ID=mRNA_Ecto-sp13_S_contig100060.24.1|Name=mRNA_Ecto-sp13_S_contig100060.24.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100060:9..218- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |