mRNA_Ecto-sp13_S_contig100.18.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100.18.1 vs. uniprot
Match: D7G341_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G341_ECTSI) HSP 1 Score: 841 bits (2172), Expect = 2.100e-284 Identity = 471/607 (77.59%), Postives = 496/607 (81.71%), Query Frame = 2 Query: 620 LAPGEAVVERGARRAATAAAPGVPRGEMTGKNAARAVLSLVAFRVRRPVGRCRASWWKVRVERTVTSPAGLRSWSTARWLPSPRTVPSAAPSAALSDSSRGDAVGFVVGSFSAEGVSDTLLDSLGVAGVVRQVVCGLGSSPHGEDSVDVEAEVTALQGAASRMLAVVGAGAQHSQSQRHRQQEMLRRVRN*APQHRQLEAGAAARSSRDPTTVWSRQRQELGRRWRLGDIAGVDFTLPTGEGTEGDDGEALTESQLAALFINNVANPAVLSSLATDLGVDVEDLGFSNLTFYRRQELAIEIEFDVRSLKFSGERERETTRGRTFGGDDVTLGYHTWLLAITLVSIPAFIVVCISSYVDCKRAQDESWTDKPIITTAVGRSKAGAPAVVAQRMKKCA---------GATNSRGSGGVWRAGRGKGKMTAAGSQHADRKVDPSLALIDADDMCLRSSSLSQGGFTFDNPMHGGDREGRRVYGDVEHRVYATSGVAADNQTYARASATRRVHGRGPRRENQELEDEAKWPGGGMRRILGNNLGLYE*PLPTVADTDYRSGEWESESDRHASNLSPITGS-GAAGDRGGQNNSDRTYGSGGGADNHKVRGG 2410
L PGEAVVERGARRAA AAAPGVPRGEMTGKNAARAVL LVAF VRRPVGR RASWWK ++TS AGLRS STARW PSP TVPSAAP+AALSDSSRGDAVGFVVGSFSAEGVSDTLLDSLGVAGVVRQVVCGLGS PHGEDSVDVEAEVTA+QG ASRMLA VGAGAQHSQSQRH QQE+L RVR APQHRQLEAGAAA SSRDPTT WS QRQELGRR RLGDI GV+F LPTGEGTEGDDGE LTESQLAA FINNVA+PAVLSSLATDLGVDVEDLGFSNL FY+ Q+ + EFDV SL+FSG T GGDDVTLGYHTWLLAI LVSIPAFIVVCI S ++ +RAQDESWT KPII T G SKAGAPAV QRMKK GA NS SGGVWRAG KMTAAG +HADRKV+P+LALID DDMCLRSSS SQGGFTFDNPMHGG R R++YGDVE YATSGVAADN TYARASATRR G GPR+ENQELEDE +WPG MR I G++L L E LPTVA+ DY SGEWESESDRHAS SPITGS AAG RG + NSDRTYGSGGG DN K GG
Sbjct: 196 LPPGEAVVERGARRAARAAAPGVPRGEMTGKNAARAVLLLVAFCVRRPVGRRRASWWKGESAPSLTSSAGLRSSSTARWSPSPSTVPSAAPTAALSDSSRGDAVGFVVGSFSAEGVSDTLLDSLGVAGVVRQVVCGLGSCPHGEDSVDVEAEVTAIQGPASRMLAAVGAGAQHSQSQRHGQQEILSRVRRRAPQHRQLEAGAAAASSRDPTTFWSEQRQELGRRRRLGDITGVEFKLPTGEGTEGDDGEVLTESQLAAAFINNVADPAVLSSLATDLGVDVEDLGFSNLAFYQGQKFVFDKEFDVGSLEFSG--------SSTPGGDDVTLGYHTWLLAIGLVSIPAFIVVCIHSCIERERAQDESWTGKPIIMTVAGHSKAGAPAVFVQRMKKPGVVSGRHEYDGAANSGDSGGVWRAGWVTAKMTAAGGRHADRKVNPALALIDRDDMCLRSSSGSQGGFTFDNPMHGGGRGDRQLYGDVESPGYATSGVAADNPTYARASATRRAQGCGPRKENQELEDEGQWPGRRMRGISGSSLDLSEQRLPTVAEADYSSGEWESESDRHASIFSPITGSESAAGGRGWETNSDRTYGSGGGPDNRKAWGG 794 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100.18.1 >prot_Ecto-sp13_S_contig100.18.1 ID=prot_Ecto-sp13_S_contig100.18.1|Name=mRNA_Ecto-sp13_S_contig100.18.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp MMVLSAVLVDGATPSISTSAAAEAQAAAAAAAAAAAVRTVASGEDGRSAAback to top mRNA from alignment at Ecto-sp13_S_contig100:2725..14974- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100.18.1 ID=mRNA_Ecto-sp13_S_contig100.18.1|Name=mRNA_Ecto-sp13_S_contig100.18.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=12250bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100:2725..14974- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100:2725..14974- >mRNA_Ecto-sp13_S_contig100.18.1 ID=mRNA_Ecto-sp13_S_contig100.18.1|Name=mRNA_Ecto-sp13_S_contig100.18.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100:2725..14974- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |