mRNA_Ecto-sp13_S_contig1.3.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1.3.1
Unique NamemRNA_Ecto-sp13_S_contig1.3.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1.3.1 vs. uniprot
Match: D7G1Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.970e-23
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 ILLTESMNAGAHE*IHELLDGIRSSYGSRTYKRTDEIVLPFVHTIVPLMKYLWRADDLHAVQDDVRLQRLVGELQV 228
            +LLT+SMNAGAH  I ELLDG  SSY S  Y RT+EIVLPFVHTI+PLM+YLWRAD L   +    LQRLVG LQV
Sbjct:    6 MLLTDSMNAGAHGHIRELLDGTWSSYWSGFYNRTEEIVLPFVHTILPLMEYLWRADYLQC-KTTYELQRLVGGLQV 80
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BLAST of mRNA_Ecto-sp13_S_contig1.3.1 vs. uniprot
Match: D7FSN5_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN5_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.660e-15
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 ILLTESMNAGAHE*IHELLDGIRSSYGSRTYKRTDEIVLPFVHTIVPLMKYLWRADDL 174
            +LLTESMNAGAH  IHELL G  SS  S  Y RT++I+LPF HTIVPLMKYLWR + L
Sbjct:  304 MLLTESMNAGAHGHIHELLGGAWSSDWSGFYNRTEKIILPFAHTIVPLMKYLWRTEYL 361
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BLAST of mRNA_Ecto-sp13_S_contig1.3.1 vs. uniprot
Match: D7G1K2_ECTSI (Hypothetical tyrosinase-like protein F21C3.2 in chromosome I, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.550e-8
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    7 LTESMNAGAHE*IHELLDGIRSSYGSRTYKRTDEIVLPFVHTIVPLMKYLWR 162
            LTES N GAH  IHELL G  SS  +   +RT ++V PFVH  VPL+K LWR
Sbjct:  302 LTESFNDGAHGEIHELLGGAWSSEATAYSERTSDLVQPFVHVAVPLLKMLWR 353
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BLAST of mRNA_Ecto-sp13_S_contig1.3.1 vs. uniprot
Match: A0A6H5KKI9_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.730e-7
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    7 LTESMNAGAHE*IHELLDGIRSSYGSRTYKRTDEIVLPFVHTIVPLMKYLWR 162
            LTES N GAH  IHELL G  S   +   +RT ++V PFVH  VPL+K LWR
Sbjct:  495 LTESFNDGAHGEIHELLGGAWSLEATAYAERTSDVVQPFVHVAVPLLKMLWR 546
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1Z8_ECTSI3.970e-2368.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSN5_ECTSI4.660e-1568.97Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
D7G1K2_ECTSI3.550e-857.69Hypothetical tyrosinase-like protein F21C3.2 in ch... [more]
A0A6H5KKI9_9PHAE1.730e-755.77TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1contigEcto-sp13_S_contig1:21666..22730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size343
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003550.1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462497.6173344-CDS-Ecto-sp13_S_contig1:21665..217261681462497.6173344-CDS-Ecto-sp13_S_contig1:21665..21726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1 21666..21726 -
1681462497.6265352-CDS-Ecto-sp13_S_contig1:22008..221151681462497.6265352-CDS-Ecto-sp13_S_contig1:22008..22115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1 22009..22115 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462497.6425874-UTR-Ecto-sp13_S_contig1:22115..221521681462497.6425874-UTR-Ecto-sp13_S_contig1:22115..22152Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1 22116..22152 -
1681462497.6522126-UTR-Ecto-sp13_S_contig1:22592..227301681462497.6522126-UTR-Ecto-sp13_S_contig1:22592..22730Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1 22593..22730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1.3.1prot_Ecto-sp13_S_contig1.3.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1 21666..22115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1.3.1

>prot_Ecto-sp13_S_contig1.3.1 ID=prot_Ecto-sp13_S_contig1.3.1|Name=mRNA_Ecto-sp13_S_contig1.3.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MQCKTTCDFSVSWANYRCTLSTEAVAGQTPSEVCARTLPGSKHRPVEIVE
RVSRRP
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mRNA from alignment at Ecto-sp13_S_contig1:21666..22730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1.3.1 ID=mRNA_Ecto-sp13_S_contig1.3.1|Name=mRNA_Ecto-sp13_S_contig1.3.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1:21666..22730- (Ectocarpus species13 EcNAP12_S_4_19m)
ATACTGCTGACGGAGTCGATGAACGCCGGCGCGCACGAGTAAATCCACGA
GCTCCTCGACGGAATACGGTCCTCGTACGGGTCCAGGACTTACAAGCGGA
CGGACGAGATCGTCCTCCCGTTCGTGCACACGATTGTGGTGAGCACGAAT
CTTGGTTTGTTGCTCATGGTGAACCTCTGATAGTGTCTTGATTGTCGTTA
TTGTCGATTCTGTCTTGCGGTGGTGCTGCCCTGTCGTCCGTGACGATTCG
GCCAAGAGACCGGCTCAGACGAATTAGCCGAATTGAGAGCGGACAGCTTT
TGCTGACAGCACTTTTAGGCTGTTCAAGCAAAGGACGGTGGTAGCATTCT
ATGCTTGTTGCTTTCCTGCTGCATGAGGTAGAGCGTTTTTCCCTCGCCAC
CCCTCCTTACCGCTTGCTGCGTATCATCGACCCGAGCGTACGAGAGCGTC
GAACCAACTAGCGCTGCATTCTGAAGCTCTTCCCTTGTATTGAGTTCCTG
TGGGATGAACGTCCGACGCCCGCCACTTCCGTGTCCCCCTCTGTGCGTTC
CTGCCGTCCCTGTCTTCACCAAAACCAGCCTCTGATGAAATATCTTTGGA
GAGCGGACGACCTGCATGCAGTGCAAGACGACGTGCGACTTCAGCGTCTC
GTGGGCGAACTACAGGTGCACCCTCAGCACCGAAGCGGTGGCCGGGCAAA
CACCATCAGAGGTATGCGCTCGGTCTCCCTGAATTCGTGAATAAAGCTCG
TGTCTTCGCGGTAGAAAGGTCGAGGCGGGAGAACATGGCATTTGCGATTG
TTTCAGGCTTGGTGTTCTGTTCGTTCCGCGGACGCAATCCTTCCATTTCG
CCACCTCTAGTGCACTTCTTGGGTTGTTCGACGAGTATAAGCTAATGGCC
TTTTGCTGCCCTTTCGATCGCACGGAACGAAGAGGAACATAACACGAAAG
GCGTTGGCCTGACCTTCATGATGCGCCCTGCTCAGCAAATTAACTCCACA
ACAGCACGTTACCCGGGAGCAAGCACCGCCCCGTCGAGATTGTTGAGCGC
GTTTCGAGGCGCCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1:21666..22730-

>mRNA_Ecto-sp13_S_contig1.3.1 ID=mRNA_Ecto-sp13_S_contig1.3.1|Name=mRNA_Ecto-sp13_S_contig1.3.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1:21666..22730- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTGCAAGACGACGTGCGACTTCAGCGTCTCGTGGGCGAACTACAG
GTGCACCCTCAGCACCGAAGCGGTGGCCGGGCAAACACCATCAGAGGTAT
GCGCTCGCACGTTACCCGGGAGCAAGCACCGCCCCGTCGAGATTGTTGAG
CGCGTTTCGAGGCGCCCA
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