mRNA_Ecto-sp13_S_contig1.13.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1.13.1
Unique NamemRNA_Ecto-sp13_S_contig1.13.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1contigEcto-sp13_S_contig1:89779..91886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start1
Seed ortholog score63.9
Seed ortholog evalue6.6e-08
Seed eggNOG ortholog6500.XP_005112603.1
Model size549
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs39MT5@33154,3CPCY@33208,3E5HI@33213,KOG0277@1,KOG0277@2759
Cds size411
COG Functional cat.U
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462498.4554436-UTR-Ecto-sp13_S_contig1:89778..899151681462498.4554436-UTR-Ecto-sp13_S_contig1:89778..89915Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1 89779..89915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462498.4667115-CDS-Ecto-sp13_S_contig1:89915..901161681462498.4667115-CDS-Ecto-sp13_S_contig1:89915..90116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1 89916..90116 +
1681462498.4767122-CDS-Ecto-sp13_S_contig1:91361..915251681462498.4767122-CDS-Ecto-sp13_S_contig1:91361..91525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1 91362..91525 +
1681462498.4863696-CDS-Ecto-sp13_S_contig1:91840..918861681462498.4863696-CDS-Ecto-sp13_S_contig1:91840..91886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1 91841..91886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1.13.1prot_Ecto-sp13_S_contig1.13.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1 89916..91886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1.13.1

>prot_Ecto-sp13_S_contig1.13.1 ID=prot_Ecto-sp13_S_contig1.13.1|Name=mRNA_Ecto-sp13_S_contig1.13.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MTVTNSPRRRTSRRRGSPSPAPCSPPSSPRGPSLRRRDDVQHVMRPPQPY
MKQIKLHPSGCQQWSSQIVTGGGVYMAYASTLTTYVYDVRDFSLISILGG
NDCNVHSILWHPTNPHRVRVLSTNGRGSEWDVRSEHR
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mRNA from alignment at Ecto-sp13_S_contig1:89779..91886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1.13.1 ID=mRNA_Ecto-sp13_S_contig1.13.1|Name=mRNA_Ecto-sp13_S_contig1.13.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1:89779..91886+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTCCAAACAAACTCGTCGTCTCGTGGCCAATCGCCACGAAGGGGGGC
GAGCTTTGAATGCTGCCTAAAGGTTGACGTTATACATTCAGTTTGCGTTG
TAATTGCCGTCGATGTTATGTTTCCTTGCTGAAAAAAATGACGGTGACGA
ACAGCCCAAGGCGTCGAACATCTAGGAGAAGGGGATCGCCTTCACCGGCA
CCATGCTCTCCACCTTCCTCACCCAGGGGGCCTTCTCTCCGGAGGAGGGA
TGACGTACAACATGTTATGCGGCCACCGCAACCATACATGAAGCAGATCA
AGCTCCATCCGTCGGGATGCCAGCAATGGTCATCTCAGGTACACACACAC
TTCGCTCATGTCCGTATGTACGTGCAACATCCTTTCTTGGACACGAGAGG
ATGTGGCGCTGTCTTGCAGCTCCCGGGTCTGCCCCCTTCTCAAGAAGCAG
AACGTGTTCGTGACGCGTCGTGCGACCACCGTAGCCCAAGGGAACTTGCA
CTCTCCGGCATCCGTCGTGTTACTGTCGCTCTGCCTCAGGTCCTCAGTAG
TTTCGACTGTGTAGGACTGCTGTATTTAGTCCACTGCAAGAAGTCTATTT
GATCGAGAGAACTGCGACAGGGGACGACGTGGTGGCTGGTTCTAGACTTC
GTGGTCGTGGGCATATTCACATAGCACTTGGCAGGGGAGGAGCATGTTGA
ACGGTCAGTGTTTGCCGTGAGTTCAGTGATGCCTGCAGTTGCAGTACAGT
CAAGTCCACTGACAACAATGCCGGACGGAGGATGCGTTGGGATAGAGATG
CCGCATCTTCTAAGAAGAAGGAACAGTCGATCGGCTACTTAAAGAAGGAA
ACCGGAACGTGTGAAGTGTGAACAAACGGGGTGGCAAAGCCTATCTATGT
GTGTATTTCGGCGGCAATCCCCGCAAGAGGCTGTAGATGCATGCTAACCT
ACAACACGCGTAGAGATATCTCTCTTTCGAGCCTCACGAAGATGCCTTAT
GCTCACATAGCATCAGCCCTCATATTAAAAGTGCTAAAAGCAGGTCTTGA
GACAACCACCCTCAAGCTATTCTGGCCACGAATATCATGGTATACGACAA
AGAAAGAGACTCGTTCCGGCATGCGACAGATGTTTTGTTTGCGGTCCGTC
GAATCCTTAGGGATAAGAATAAACACCTTGCGCTCGTCACACTCCCGCGA
TCATACCGTATCCTTTATAATGTGGCAAGCGTCTCGCTATTTTCGCTGTG
GTTTAGAACCCAATAATGATGTAGACGTGGGTATAACGAGTGCCGGAGAA
CTTTCAATCGTGCCCGGTACATCCCAGCCCAGACCTTCCTGGTCGGCCTC
CTGCATGGGATCGATCGCATGTCAATCTTTGCGCACACGCGCAGATAACT
GACGCGTTCTTACTGGTCGAAGAAGCCGAAAGTATTCCTTTCGATGCCTT
CTTTTAACCCCCTTCCATGACCATCAGAAAGACCCCTCGAACCGTTTCCA
ACTGCACCACATGAAGCGGTTGTCGGTGTTTTTTACCCAGAAACAAGCAA
ATTGCCTGTAACACTTCGTGCTGTCTTCTGCAGATAGTCACGGGAGGAGG
GGTCTACATGGCGTACGCCTCTACCCTCACCACATACGTTTACGACGTTC
GAGACTTCTCTCTCATTTCAATTCTGGGCGGCAACGACTGCAATGTGCAC
TCCATACTGTGGCACCCCACCAACCCCCACCGGGTCAGGGTTTTGAGGCG
AGTCGCTGAACTAACCGAGAGTTTGGGCACGATTGACCTCCTTGTACTAA
GCTTCGACAAGAGCGCGGTGAGGAATACGGCACACGCCTGATCCGGCAGG
GGTGGTGTCACCTCCTGGGTCGTACCTGTGTCGTTCGTTGACCACACACA
GCAACCGCTATGCCAGCCCTTGTACTCTCCGTGCAGCGCCTTGGACTACC
TGAGACGCTGGGAAATGAGTACACTTACCACTCCACCAGATTTTTCTGAC
TCCCACCCTCCTTTTTTTGTACCTGTTCACCCGACTCCTCTTACTCATTT
GACGTCGGGCAGCACCAACGGCCGCGGTTCGGAGTGGGACGTGCGGTCCG
AACATCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1:89779..91886+

>mRNA_Ecto-sp13_S_contig1.13.1 ID=mRNA_Ecto-sp13_S_contig1.13.1|Name=mRNA_Ecto-sp13_S_contig1.13.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1:89779..91886+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGTGACGAACAGCCCAAGGCGTCGAACATCTAGGAGAAGGGGATC
GCCTTCACCGGCACCATGCTCTCCACCTTCCTCACCCAGGGGGCCTTCTC
TCCGGAGGAGGGATGACGTACAACATGTTATGCGGCCACCGCAACCATAC
ATGAAGCAGATCAAGCTCCATCCGTCGGGATGCCAGCAATGGTCATCTCA
GATAGTCACGGGAGGAGGGGTCTACATGGCGTACGCCTCTACCCTCACCA
CATACGTTTACGACGTTCGAGACTTCTCTCTCATTTCAATTCTGGGCGGC
AACGACTGCAATGTGCACTCCATACTGTGGCACCCCACCAACCCCCACCG
GGTCAGGGTTTTGAGCACCAACGGCCGCGGTTCGGAGTGGGACGTGCGGT
CCGAACATCGG
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