mRNA_E-siliculosus-1a_F_contig1069.488.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1069.488.1
Unique NamemRNA_E-siliculosus-1a_F_contig1069.488.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1069.488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1069contigE-siliculosus-1a_F_contig1069:14292..14623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size159
Model size178
Exons2
Ec32 orthologEc-12_000090.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1069.488.1prot_E-siliculosus-1a_F_contig1069.488.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1069 14310..14623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.2526822-UTR-E-siliculosus-1a_F_contig1069:14291..143091622927570.2526822-UTR-E-siliculosus-1a_F_contig1069:14291..14309Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1069 14292..14309 +
1696318590.7126482-UTR-E-siliculosus-1a_F_contig1069:14291..143091696318590.7126482-UTR-E-siliculosus-1a_F_contig1069:14291..14309Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1069 14292..14309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.2650378-CDS-E-siliculosus-1a_F_contig1069:14309..143401622927570.2650378-CDS-E-siliculosus-1a_F_contig1069:14309..14340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 14310..14340 +
1696318590.7203016-CDS-E-siliculosus-1a_F_contig1069:14309..143401696318590.7203016-CDS-E-siliculosus-1a_F_contig1069:14309..14340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 14310..14340 +
1622927570.2776759-CDS-E-siliculosus-1a_F_contig1069:14495..146231622927570.2776759-CDS-E-siliculosus-1a_F_contig1069:14495..14623Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 14496..14623 +
1696318590.727739-CDS-E-siliculosus-1a_F_contig1069:14495..146231696318590.727739-CDS-E-siliculosus-1a_F_contig1069:14495..14623Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 14496..14623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1069.488.1

>prot_E-siliculosus-1a_F_contig1069.488.1 ID=prot_E-siliculosus-1a_F_contig1069.488.1|Name=mRNA_E-siliculosus-1a_F_contig1069.488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
MERKEASRRRIKCTVLLSRVHEHMSAGGFPRGTNMHHRRRTSQRLWARAS
YVR
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1069:14292..14623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1069.488.1 ID=mRNA_E-siliculosus-1a_F_contig1069.488.1|Name=mRNA_E-siliculosus-1a_F_contig1069.488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=332bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:14292..14623+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGGGGGGCTTTGTTGAGATGGAGAGGAAGGAAGCATCGAGAAGAAGGAG
TGAAAGACAATCGTAAAAAGGCACACACATGATCTTGTTGTGCACGAAAA
CGCACGGTTCACGCCGGCACCGGAACGAAACTTCCTCAGACAGCCTTTTG
TAAGTGTACGTTGTTGCCTTTCCTCTCCTTGCGCCTCGTCTCCTAGGCAT
GTAGTAAAATGTACCGTTCTTTTGTCTCGAGTACACGAACACATGTCGGC
CGGCGGGTTCCCAAGAGGAACCAACATGCACCACCGTCGCCGAACTAGCC
AGCGCCTTTGGGCAAGGGCATCATACGTGCGT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1069:14292..14623+

>mRNA_E-siliculosus-1a_F_contig1069.488.1 ID=mRNA_E-siliculosus-1a_F_contig1069.488.1|Name=mRNA_E-siliculosus-1a_F_contig1069.488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:14292..14623+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGAGGAAGGAAGCATCGAGAAGAAGGAATGGAGAGGAAGGAAGCAT
CGAGAAGAAGGATAAAATGTACCGTTCTTTTGTCTCGAGTACACGAACAC
ATGTCGGCCGGCGGGTTCCCAAGAGGAACCAACATGCACCACCGTCGCCG
AACTAGCCAGCGCCTTTGGGCAAGGGCATCATACGTGCGTTAAAATGTAC
CGTTCTTTTGTCTCGAGTACACGAACACATGTCGGCCGGCGGGTTCCCAA
GAGGAACCAACATGCACCACCGTCGCCGAACTAGCCAGCGCCTTTGGGCA
AGGGCATCATACGTGCGT
back to top