mRNA_E-siliculosus-1a_F_contig1061.436.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1061.436.1
Unique NamemRNA_E-siliculosus-1a_F_contig1061.436.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JU76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU76_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.780e-66
Identity = 120/144 (83.33%), Postives = 126/144 (87.50%), Query Frame = 2
Query: 1028 PPPHFAHHPALGRRKFQARVDESAVKLPPQERRDTAAETRPARGNRRGLEIELS----PEQNKASFAAAGLWPVNKDRAISRLRGTAKRNARPTDRPPLEDVAIVASNQELEESLGGTALRDLEVRGHLVVGVEASAVMVGGLL 1447
            PPPHFAHHPALGRRKFQAR DESAVKLPPQERRDTAAE R ARGNRR L +E+      EQNKASFAAA LWPVNKDRAISRL GTAKR  RPTDRPPLEDV+IVAS QELEESLGG A++DLEV GHLVVGV+ASAVMVGGLL
Sbjct:   61 PPPHFAHHPALGRRKFQARGDESAVKLPPQERRDTAAEKRRARGNRRALRLEIELFTGAEQNKASFAAAELWPVNKDRAISRLWGTAKRKTRPTDRPPLEDVSIVASIQELEESLGGAAVKDLEVNGHLVVGVKASAVMVGGLL 204          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.130e-54
Identity = 116/198 (58.59%), Postives = 142/198 (71.72%), Query Frame = 3
Query:  615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187
            T QGT+T+ A AE   K  +S RS   ENTT    VV+TISANG T+APTIIF+G+RL+PDW    NGP+ ARY C T+SS ++ + F+ YLKD HKQL   G+LDGKPH LV+ DG AS V  S + I+LAM+LNI+LFQLP  TSHITQPLDV   G FK+E+TK L  +   NGG+LP KRD+PGVIA AW+ S 
Sbjct:  168 TPQGTKTMKAFAEAGQKVVESMRSNSLENTT----VVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTC-TDSSFMQGDVFIKYLKDFHKQLDDRGVLDGKPHTLVL-DGHASHV--SYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQRSL 357          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 2.070e-53
Identity = 110/182 (60.44%), Postives = 135/182 (74.18%), Query Frame = 3
Query:  657 KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187
            K  +S RS  RENTT    VV+TISANG T+APTIIF+G+RL+PDW    NGP+ ARY C T+SS ++ + F+ YLKD HKQL   G+LDGKPHILV+ DG AS V  S + I+LAMDLNI+LF+LP  TSHITQPLDV   G FK+E+TK L  +   NGG+LP KRD+PGVIA AW++S 
Sbjct:   10 KVVESMRSNSRENTT----VVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTC-TDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVL-DGHASHV--SYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSL 183          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5KC91_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC91_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 2.190e-53
Identity = 114/197 (57.87%), Postives = 140/197 (71.07%), Query Frame = 3
Query:  657 KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSFRRSRTRHHSPPRGYG 1232
            K  +S RS  RENTT    VV+TISANG T+APTIIF+G+RL+PDW    NGP+ ARY C T+SS ++ + F++YLKD HKQL   G+LD KPHILV+ DG AS V  S + I+LAM+LNI+LFQLP  TSHITQPLDV   G FK+E+TK L  +   NGG+LP KRD+PGVIA AW+ SF   R +     RG G
Sbjct:   10 KVVESMRSNSRENTT----VVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTC-TDSSFMQGDVFINYLKDFHKQLDDRGVLDRKPHILVL-DGHASHV--SYEVIKLAMELNIILFQLPSRTSHITQPLDVVAFGTFKKEVTKVLQDYCHANGGLLPPKRDVPGVIAAAWQRSFTPERHKASFGGRGCG 198          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JYS0_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS0_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 3.250e-52
Identity = 115/198 (58.08%), Postives = 140/198 (70.71%), Query Frame = 3
Query:  615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187
            T QGT+T  A AE+  K   S RS  RENTTT   VV TISA+G T+APTIIF+G RL+ DW    NGP GARY C T+SS ++ + F+ YLKD HKQ G  GLLDGKPHIL++ DG +S V    +  RLAM+L I+L QLP  TSHITQPLDV   G FK+ +T+ L+SF   +GG+LP KRD+PGVIA+AWK SF
Sbjct:  148 TPQGTKTTKAFAESGQKVVGSMRSNSRENTTT---VVVTISADGHTWAPTIIFKGHRLQADWFVERNGPEGARYTC-TDSSFMQGDVFIAYLKDFHKQFGERGLLDGKPHILLL-DGHSSHVRV--EVTRLAMNLKIILIQLPSHTSHITQPLDVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPGVIADAWKLSF 338          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5KHG4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG4_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.460e-51
Identity = 114/198 (57.58%), Postives = 140/198 (70.71%), Query Frame = 3
Query:  615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187
            T QGT+T+ A AE   K  +S RS  REN T    VV+TIS NG T+APTIIF+G+RL+ DW    NGP+ ARY C T+SS ++ + F+ YLKD +KQL   G+LDGKPHILV+G G AS V  S + I+LAM+LNI+LFQLP  TSHITQPLDV   G FK+E+TK L  +   NGG LP KRD+P VIA AW+ SF
Sbjct:  111 TPQGTKTMKAFAEVGQKVVESMRSNSRENAT----VVTTISTNGVTWAPTIIFKGQRLQLDWFAERNGPKDARYTC-TDSSFMQGDVFIKYLKDFYKQLDDRGVLDGKPHILVLG-GHASLV--SYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGSLPLKRDVPSVIAAAWQRSF 300          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.780e-51
Identity = 115/204 (56.37%), Postives = 146/204 (71.57%), Query Frame = 3
Query:  615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSFRRSRTR 1205
            T QG +T+ A  +   K  +S R+  RENTT    +V+TISA+G T+APTIIF+G+RL+PDW    NGP  ARY C T+SS ++ N F+ YLKD H+QL   GL+DGKPHIL++ DG AS V  S + I+LAM+LNIVLFQLP  TSHITQPLDV   G FKRE+TK LS +   +GG+LP+KRD+PGVIA AW ++F   R R
Sbjct:  172 TPQGNKTMKAYCQAGQKVVESVRANSRENTT----LVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTC-TDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLL-DGHASHV--SVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNR 367          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5J9B8_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B8_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.060e-50
Identity = 106/179 (59.22%), Postives = 129/179 (72.07%), Query Frame = 3
Query:  666 DSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187
            +S RS  RENTT    VV+TISANG T+APTIIF G+RL+PDW    NGP+ ARY C T+SS ++ + F+ Y KD HKQL   G+LDGKPH LV+ D  AS V  S + I+LAM+LNI+LFQLP  TSHITQPLDV   G FK+E+T  L  +   NGG+LP KRD+PGVIA AW+ SF
Sbjct:   13 ESMRSNSRENTT----VVTTISANGATWAPTIIFRGQRLQPDWFAERNGPKDARYTC-TDSSFMQGDVFIKYFKDFHKQLDDRGVLDGKPHTLVL-DEHASYV--SYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTTVLQDYYHANGGLLPLKRDVPGVIAAAWQRSF 183          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.080e-50
Identity = 115/204 (56.37%), Postives = 146/204 (71.57%), Query Frame = 3
Query:  615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSFRRSRTR 1205
            T QG +T+ A  +   K  +S R+  RENTT    +V+TISA+G T+APTIIF+G+RL+PDW    NGP  ARY C T+SS ++ N F+ YLKD H+QL   GL+DGKPHIL++ DG AS V  S + I+LAM+LNIVLFQLP  TSHITQPLDV   G FKRE+TK LS +   +GG+LP+KRD+PGVIA AW ++F   R R
Sbjct:  413 TPQGNKTMKAYCQAGQKVVESVRANSRENTT----LVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTC-TDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLL-DGHASHV--SVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNR 608          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5KN20_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN20_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.220e-50
Identity = 114/202 (56.44%), Postives = 141/202 (69.80%), Query Frame = 3
Query:  609 SATSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSFRR 1193
            S T QGT+T  A AE+  K   + RS  RENTT    VV+TIS +G T+APTIIF+G+RL+ DW    NGP GARY C T+SS ++ + F+ YLKD HKQLG  GLLDGKPHIL++ DG AS V  S    RLAM+L I+LFQLP  TSHITQPL+V   G FK+ +T+ L+SF   +GG+LP KRD+P VIA+A K   RR
Sbjct:  226 STTPQGTKTTKAFAESGQKVVGAMRSNSRENTT----VVATISVDGHTWAPTIIFKGQRLQADWFVERNGPEGARYTC-TDSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLL-DGHASHV--SVQVFRLAMNLRIILFQLPSHTSHITQPLNVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPSVIADASKKKERR 419          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU76_9PHAE1.780e-6683.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS6_9PHAE1.130e-5458.59DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KGL1_9PHAE2.070e-5360.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KC91_9PHAE2.190e-5357.87DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JYS0_9PHAE3.250e-5258.08DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KHG4_9PHAE1.460e-5157.58DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JV04_9PHAE1.780e-5156.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9B8_9PHAE1.060e-5059.22DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JJ12_9PHAE2.080e-5056.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KN20_9PHAE2.220e-5056.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1061contigE-siliculosus-1a_F_contig1061:27992..30937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size555
Model size1985
Exons2
Ec32 orthologEc-03_003910.1
Ec32 ortholog descriptionDDE superfamily endonuclease, CENP-B-like
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CZS4@1,2SBGG@2759
EggNOG free text desc.DDE superfamily endonuclease
Seed eggNOG ortholog2880.D8LN28
Seed ortholog evalue1.3e-27
Seed ortholog score129.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1061.436.1prot_E-siliculosus-1a_F_contig1061.436.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1061 29636..30190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.6490462-UTR-E-siliculosus-1a_F_contig1061:27991..286001622927562.6490462-UTR-E-siliculosus-1a_F_contig1061:27991..28600Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1061 27992..28600 +
1696318587.572028-UTR-E-siliculosus-1a_F_contig1061:27991..286001696318587.572028-UTR-E-siliculosus-1a_F_contig1061:27991..28600Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1061 27992..28600 +
1622927562.661549-UTR-E-siliculosus-1a_F_contig1061:29561..296351622927562.661549-UTR-E-siliculosus-1a_F_contig1061:29561..29635Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1061 29562..29635 +
1696318587.5823848-UTR-E-siliculosus-1a_F_contig1061:29561..296351696318587.5823848-UTR-E-siliculosus-1a_F_contig1061:29561..29635Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1061 29562..29635 +
1622927562.6852164-UTR-E-siliculosus-1a_F_contig1061:30190..309371622927562.6852164-UTR-E-siliculosus-1a_F_contig1061:30190..30937Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1061 30191..30937 +
1696318587.603319-UTR-E-siliculosus-1a_F_contig1061:30190..309371696318587.603319-UTR-E-siliculosus-1a_F_contig1061:30190..30937Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1061 30191..30937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.673169-CDS-E-siliculosus-1a_F_contig1061:29635..301901622927562.673169-CDS-E-siliculosus-1a_F_contig1061:29635..30190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1061 29636..30190 +
1696318587.5918121-CDS-E-siliculosus-1a_F_contig1061:29635..301901696318587.5918121-CDS-E-siliculosus-1a_F_contig1061:29635..30190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1061 29636..30190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1061.436.1

>prot_E-siliculosus-1a_F_contig1061.436.1 ID=prot_E-siliculosus-1a_F_contig1061.436.1|Name=mRNA_E-siliculosus-1a_F_contig1061.436.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=185bp
MRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWLNNGPRGARYACC
TESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSD
AIRLAMDLNIVLFQLPPPTSHITQPLDVGNFKRELTKALSSFRLKNGGIL
PRKRDLPGVIAEAWKSSFRRSRTRHHSPPRGYGQ*
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mRNA from alignment at E-siliculosus-1a_F_contig1061:27992..30937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1061.436.1 ID=mRNA_E-siliculosus-1a_F_contig1061.436.1|Name=mRNA_E-siliculosus-1a_F_contig1061.436.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2946bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:27992..30937+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACGCACGATCCGTTGTTTGAGCACTGAGCTCTCGGCGATCCGACCATCC AACCACGAGTTACAGCAGCAACGGGACAGCAGCCAGCACGCTCGCCCGTG CGGAAAAGCACCGAAGTCTTGCTGCTACAGTTAGCATGGGCCGCCCGCGT AGGGTGGACGAAGCGCAGGCTCAGAAGGCCTGCGAAGCCGTCATGGGCGG CATGTCCGTTCGGAAGGCGGCCACCTCCTTCGGGGTAGGCCGGGCATCGG TCGCGACCCGCCCGGCGGGCAAGGTGCCCATGGACGGGAGATTCGGCCCC GGGACCGTCCTGAGCGAAGCCGAGGAGAACGCGGTGGAAGACGTTCTGCT GTTCGCTGCTCGCAACGGCCTGTCTCTGGGTCGGGCTCAGCTGAAAGATG CGGTGAGACGGCTGTGCGACGACGGTCGCGCCGTGCCTTGGGACCGAGAG AAGGGGCCCGGTCGAGCGTGGGTGAGCGGCTTCCTCCGCAGGCACCCGCG AGTGTCGGAGCGAAGGAACGGGGTATACGAGGCCACCGAAGAGGACATCG AGCCCCGCATCGAAGCGTTCTGCAAGATGTGGGCAGCCACGGTGCACAAC GCGGATCAAGTGAGATGCAAGGATTAGGATTTGCAGTAACTGACTGGGAC ACTCCCATTCCGCACATGAGGCCGTTGAATGTTGGCGTTTGCTGCTTTAC TCGTAGCCTTGTATCAGTAGCTCAACTGCAGTGGAGGGGCTGCTGTGCAA CAAAGACGGGTCTTGAAAATATGCACGATCAGGCGGAGTTCTGAGGTCCG TCGCTGCGGAGGGATTTTGAAATTTTGGTCAGCATGAAGTTCTTAACTGT ACCGCATAGCAGCTCTTCCTTTAGTGCTGGGTGTGGGTCTATCTTGTCTG AAGTAGAGTATTGTCTGAATTAGAGTGCTGCTCTCTTCTATTGTAGACGA GAACCAACAGCAAATTCGGCAGCTTTTGGGCAGGTATACAACAACACGCA CGAGTTTTGGAGACTTGCCTACGTAAAGACTGTGGACTTTTGCACATCGG TATACCCCCCACTACCGTACCTGGTATGTACGTAGTTAAGGTCTGGAACA GCATTGTACTTTAGGACTATTTTGGGAGGTTTGTTAAGAAACCCCCATTT GTAGCATAACCTTCTAGGAACTGAGAACCCTAGCCTCGGCCACAACTATA GGTTGTTCCGTGCGGGCGCCAGCTGCTGTAGCTCGAGGGACCTACAGCGA CGCAGAACGAGGAAGTTGCGGATGCCACATCGACTAGTTGCGTGTGCCAA CGATGATCGGCAGCAGACGAATCTAAAGGTATAGACTACGCGCACCCGCT GTTGCTCTTCCTGTTGCCTGTTCCAGCTACCGCTGTTTGGTAGACGATCA CAGATTGCGTAGGTTGTAATCGTTTGCCGCACCGAAAAAAACCTAAACAC TAATTGAAACCTCACCCCCCTCGTTGAATCCTGGGGGAAGCGCGTAACTG TTTGTGCTGGTGTGTGCGCCGGCCACCCGCCCCCCTGAACCCTACACTAC GCGATCTCCCCCTTTGGTAGGTGCAACCTCGCAAGGCACCCGGACTTTGA ACGCGATTGCGGAAACTAAGGCAGCTGATTCGTTTCGATCCGAGATGCGA GAAAACACCACCACCACTACTACCGTGGTGTCCACCATCAGCGCGAACGG CGACACGTTTGCGCCAACGATAATCTTCGAAGGGAGGCGACTGGAGCCTG ATTGGCTTAACAACGGCCCGCGGGGTGCGAGGTACGCCTGCTGTACGGAA TCTTCGTCCATACGGACCAACGCGTTCATGGACTACCTGAAGGACCTCCA CAAGCAGCTCGGCGGGCTTGGCTTGCTGGACGGGAAGCCTCACATCCTCG TGGTCGGCGATGGACTCGCCTCACGCGTGGTGGCGAGCTCGGACGCCATC AGGCTGGCCATGGACCTCAACATCGTTCTCTTCCAGCTCCCCCCCCCCAC TTCGCACATCACCCAGCCCTTGGACGTCGGAAATTTCAAGCGAGAGTTGA CGAAAGCGCTGTCAAGCTTCCGCCTCAAGAACGGCGGGATACTGCCGCGG AAACGCGACCTGCCCGGGGTAATCGCAGAGGCTTGGAAATCGAGCTTTCG CCGGAGCAGAACAAGGCATCATTCGCCGCCGCGGGGCTATGGCCAGTGAA CAAGGACCGGGCGATAAGCCGGCTACGAGGAACGGCGAAGAGGAACGCGC GGCCAACCGATCGCCCGCCCCTGGAGGACGTCGCCATCGTTGCTTCAAAC CAGGAGCTCGAAGAATCTCTCGGCGGGACGGCCCTCAGAGACCTGGAGGT GCGTGGACACCTGGTCGTGGGGGTTGAGGCAAGCGCGGTGATGGTCGGGG GGCTCTTGGCTCAGAGGAAGCGCGCCAAATAGATTTGAGGGCCTCATCGG GGGTGCGACAATGCCTCGCGGCGGGATTCGTTGATGTGTAGCCACCTGAA GTTTTTTTCTCCTTGTTACACAGAACGCGCCACTACCTCTTAGGTTGACC GAGACTCGCTTCTTGTTTTGCTCATCGGGTACTACCCCCACGGCGACTAC ATAGGTTTTTGTGTAGGACCGAGCACCTGCTCTTACGGCCAAGGTCTTAG ATTTTTTTACTTGTTTTGAACGCTCAAGTTCCTTTCTGTTGAGTTGTTCG GTGGTGGCGCGTTCTGTACGTGTCTTGTCGCACTCGAAGTAGAACCAGAC AAGTTCCATACACAGCAAAATTTGTTGACGCGTAGTCGACTCGTACCATG AACTGTAGGGTTGCGCGCGGTTCGTAGCAGGCTGGTACGATCAGTCCAGA ATTTTCACGTTCAGAGCTATAGTAGCGGTTAACGGCTGTAGATTCTCACA AGTGGCAAGCAAAATCAGCAAAATCAACCATCTTGGAACACGCACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1061:27992..30937+

>mRNA_E-siliculosus-1a_F_contig1061.436.1 ID=mRNA_E-siliculosus-1a_F_contig1061.436.1|Name=mRNA_E-siliculosus-1a_F_contig1061.436.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:27992..30937+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGAGAAAACACCACCACCACTACTACCGTGGTGTCCACCATCAGCGC
GAACGGCGACACGTTTGCGCCAACGATAATCTTCGAAGGGAGGCGACTGG
AGCCTGATTGGCTTAACAACGGCCCGCGGGGTGCGAGGTACGCCTGCTGT
ACGGAATCTTCGTCCATACGGACCAACGCGTTCATGGACTACCTGAAGGA
CCTCCACAAGCAGCTCGGCGGGCTTGGCTTGCTGGACGGGAAGCCTCACA
TCCTCGTGGTCGGCGATGGACTCGCCTCACGCGTGGTGGCGAGCTCGGAC
GCCATCAGGCTGGCCATGGACCTCAACATCGTTCTCTTCCAGCTCCCCCC
CCCCACTTCGCACATCACCCAGCCCTTGGACGTCGGAAATTTCAAGCGAG
AGTTGACGAAAGCGCTGTCAAGCTTCCGCCTCAAGAACGGCGGGATACTG
CCGCGGAAACGCGACCTGCCCGGGGTAATCGCAGAGGCTTGGAAATCGAG
CTTTCGCCGGAGCAGAACAAGGCATCATTCGCCGCCGCGGGGCTATGGCC
AGTGAATGCGAGAAAACACCACCACCACTACTACCGTGGTGTCCACCATC
AGCGCGAACGGCGACACGTTTGCGCCAACGATAATCTTCGAAGGGAGGCG
ACTGGAGCCTGATTGGCTTAACAACGGCCCGCGGGGTGCGAGGTACGCCT
GCTGTACGGAATCTTCGTCCATACGGACCAACGCGTTCATGGACTACCTG
AAGGACCTCCACAAGCAGCTCGGCGGGCTTGGCTTGCTGGACGGGAAGCC
TCACATCCTCGTGGTCGGCGATGGACTCGCCTCACGCGTGGTGGCGAGCT
CGGACGCCATCAGGCTGGCCATGGACCTCAACATCGTTCTCTTCCAGCTC
CCCCCCCCCACTTCGCACATCACCCAGCCCTTGGACGTCGGAAATTTCAA
GCGAGAGTTGACGAAAGCGCTGTCAAGCTTCCGCCTCAAGAACGGCGGGA
TACTGCCGCGGAAACGCGACCTGCCCGGGGTAATCGCAGAGGCTTGGAAA
TCGAGCTTTCGCCGGAGCAGAACAAGGCATCATTCGCCGCCGCGGGGCTA
TGGCCAGTGA
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