prot_E-siliculosus-1a_F_contig10.42.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig10.42.1
Unique Nameprot_E-siliculosus-1a_F_contig10.42.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length653
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 967 bits (2499), Expect = 0.000e+0
Identity = 535/653 (81.93%), Postives = 547/653 (83.77%), Query Frame = 0
Query:    1 MGEPRTSLWSRLVVFYSTERDGQLRSGVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDQRSSPLSPTGTMSTAAAGAGSXXXGVAGREPAARDNKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRLLPKPHASTGPTATAGGATAPEASATAAVVGGAADSRSGVDYFGAGLRGGGAGVVPPLDAAGSPRGSHQARETWPASGGGRGRYGPLVRSAADMERADKDMASRRRLVEGALAGDAEADPADSAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPSPKPAEEEHPIDRDAAAASKVTGFEGLGGGGSGDGGYAGAGGVAWSRDARGPEGLGKVTAGAGGARAADDEKLVGVSPADGSEPRTATAWSVTGTGGFKGGRIRGERAGDGGGSSERIDPRDPRMAVAXXXXXXXXAAE-ACSHETREGGVRTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGXXXXXXXXXXXXXSGEIPAAEVRKKKSTRRSRSKGPWTGELKPVARRRYLRQLLIRGDNVVMIWEAPKS 652
            MGEPRTSLWSRLVVFYS  +  QL + VMAEIVAKYGSKEKELSARLLKKY RPLP SVASQDLRRVLLEFGMEDEDLARGKPSDPD+R+SPLSPTG MSTAAAGAG XXX  AGREP ARDN++LGRGEGAGSSP GDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYR+LPKPHASTGPTATAGG               AADSRSGVDYFGAG R GGAGV+PP +AAGSPRGSHQARETWP SGGGR RY PLVRSAADMERADKDMASRRRL EGALAGDAEADPAD AEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPK PSPKPAEEE PIDRDAAAASKVTGFEGLG                          LGKVT       AADDEK VG+SPADGSE R ATAWSVTGTGGFKGGRIRGE AGD GG SERIDPRD RM VA        A E ACS ETREGG RTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQG             +GEIPAAEVRKKKSTRRSRSKGPWTGE KPVARRRYL+QLLIRGDNVVMIWEAPKS
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPTARDNEKLGRGEGAGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKQPSPKPAEEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVTGXXXXXXAADDEKFVGISPADGSEQRAATAWSVTGTGGFKGGRIRGEVAGDAGGRSERIDPRDRRMPVAAVAAASGAATEEACSDETREGGARTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAAEVRKKKSTRRSRSKGPWTGERKPVARRRYLKQLLIRGDNVVMIWEAPKS 653          
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 945 bits (2443), Expect = 0.000e+0
Identity = 528/653 (80.86%), Postives = 542/653 (83.00%), Query Frame = 0
Query:    1 MGEPRTSLWSRLVVFYSTERDGQLRSGVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDQRSSPLSPTGTMSTAAAGAGSXXXGVAGREPAARDNKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRLLPKPHASTGPTATAGGATAPEASATAAVVGGAADSRSGVDYFGAGLRGGGAGVVPPLDAAGSPRGSHQARETWPASGGGRGRYGPLVRSAADMERADKDMASRRRLVEGALAGDAEADPADSAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPSPKPAEEEHPIDRDAAAASKVTGFEGLGGGGSGDGGYAGAGGVAWSRDARGPEGLGKVTAGAGGARAADDEKLVGVSPADGSEPRTATAWSVTGTGGFKGGRIRGERAGDGGGSSERIDPRDPRMAVAXXXXXXXXAAE-ACSHETREGGVRTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGXXXXXXXXXXXXXSGEIPAAEVRKKKSTRRSRSKGPWTGELKPVARRRYLRQLLIRGDNVVMIWEAPKS 652
            MGEPRTSLWSRLVVFYS  +  QL   VMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPD+RSSPLSP GTMST  AGAGS   GVAGRE AAR+NKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFP+EPALDNLAKFYR+LPKP  STGP ATAG                 ADSRSGV YFG+G RGGGAGVVPP  AAGSPRGSHQAR+TWPASGGGRGR+G LVRSAADMERADKDMA RRRL EGALAGDAE DPADSA  RFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLP PKPAEE+ PIDRDAAAASKVTGFEGLG                      GPEGLGKVTAGAG A AADD+K VGVSPADGSEP  ATAW+VTGTGGFKGGRI GE  GDGGGSSERI PRDPRM VA        A E ACS ETREGG RTATR KLLPQEWGV  EREE DPT RTPDAEE+RPRPPL  AGR G             +GEIPAAEVRKKKSTRRSRSKGPWTGELKPVARRRYL+QLLIRGDNVVMIWEAPKS
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSA-GRFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPPPKPAEED-PIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXGPEGLGKVTAGAGXAGAADDDKSVGVSPADGSEPTGATAWTVTGTGGFKGGRISGEDGGDGGGSSERIYPRDPRMDVAAAAAASGAATEEACSDETREGGARTATRMKLLPQEWGVPREREENDPTGRTPDAEEKRPRPPLSTAGRHGGDVNRGGGGEGGATGEIPAAEVRKKKSTRRSRSKGPWTGELKPVARRRYLKQLLIRGDNVVMIWEAPKS 651          
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.520e-11
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 0
Query:  285 VEGALAGDAEADPADSAEERFNPVKRIVQEYAGS---GPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 370
            V+ + AGDA A    +A +R + V  + +  A +   GP+++L R   E RR  V++RRVNSIRGTC G ++AFD+HMNL+L+DV E Y
Sbjct:  155 VKKSAAGDAGASSKAAAAKRNDAVPTLFERLADTYMDGPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243          
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.840e-10
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0
Query:  317 GSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYT 371
            G+GP S L R+  ENRR  VMIR VNS+RG C GL++AFD+H N+++VDV E YT
Sbjct:  218 GTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272          
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.220e-9
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 0
Query:  312 VQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 370
            +Q+    GP+ +L R   E  R  V++RRVNS+RGTCTG ++AFD+HMNL+L+DV + Y
Sbjct:   77 IQKCRHLGPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEY 135          
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A8K1FHD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHD1_PYTOL)

HSP 1 Score: 67.8 bits (164), Expect = 1.490e-8
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0
Query:  319 GPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAF 373
            GP+++L R   E +R  V+IRRVNSIRGTC+G ++AFD+HMNL+L+DV E    F
Sbjct:  183 GPFTVLRRCFLERKRVQVVIRRVNSIRGTCSGFLKAFDKHMNLVLLDVTEVVIPF 237          
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.620e-8
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 0
Query:  307 PVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKL 385
            P+   + +    GP ++L  + +   +  V+IRRVNSIRGTCTG ++ FD+H N++L+DV E Y   V    P   P +
Sbjct:  155 PLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLVSGEQPADAPSI 233          
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A2P4XRX7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRX7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-8
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 0
Query:  287 GALAGDAEADPADSAEERFNP-VKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAF 373
            G  A +A+A  A  A     P +  ++ +    GP+ +L R   E  R  V++RRVNS+RGTC+G ++AFD+HMNL+L+DV  ++  F
Sbjct:  154 GPSAAEAKAATAKKAPTLSTPSLFEVLADTYLDGPFRVLRRCFLERTRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTHDFIPF 241          
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A3F2RTL9_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTL9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.180e-8
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 0
Query:  290 AGDAEADPADSAEERFNPV--KRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 370
            A DA+    D       P   +++   Y   GP+ +L R   E  R  V++RRVNS+RGTC+G ++AFD+HMNL+L+DV + Y
Sbjct:  155 AADAKTKVVDKKTRAATPTLFEQLADTYL-DGPFRVLRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHMNLVLMDVSQEY 236          
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: W4FR27_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR27_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.630e-8
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 0
Query:  307 PVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 370
            PV   + +   +GP SLL+R      R  V++RR++SIRGTCTG ++ FD+HMNL+L+DV + +
Sbjct:  156 PVLHAIADLHSTGPLSLLHRCLVAKARVVVVLRRISSIRGTCTGYLKGFDKHMNLVLMDVMDKF 219          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V3_ECTSI0.000e+081.93Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
A0A6H5LBR8_9PHAE0.000e+080.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6YBS7_9STRA1.520e-1146.07Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A836CP56_9STRA1.840e-1060.00Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A662WXN3_9STRA4.220e-950.85Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A8K1FHD1_PYTOL1.490e-856.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YMI3_9STRA1.620e-837.97Sm domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A2P4XRX7_9STRA2.700e-839.77Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A3F2RTL9_9STRA3.180e-840.96Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
W4FR27_9STRA3.630e-845.31Sm domain-containing protein n=2 Tax=Aphanomyces a... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 600..651
e-value: 1.4E-5
score: 26.8
NoneNo IPR availableGENE3D2.30.30.100coord: 298..400
e-value: 2.0E-11
score: 45.6
IPR039267U7 snRNA-associated Sm-like protein Lsm11PANTHERPTHR21415U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11coord: 122..650
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 319..372

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10contigE-siliculosus-1a_F_contig10:85131..89235 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10.42.1mRNA_E-siliculosus-1a_F_contig10.42.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig10 85131..91095 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig10.42.1 ID=prot_E-siliculosus-1a_F_contig10.42.1|Name=mRNA_E-siliculosus-1a_F_contig10.42.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=653bp
MGEPRTSLWSRLVVFYSTERDGQLRSGVMAEIVAKYGSKEKELSARLLKK
YGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDQRSSPLSPTGTMS
TAAAGAGSAGTGVAGREPAARDNKELGRGEGAGSSPTGDELNFRSKFFDP
LQALLHKTLRPPFPKEPALDNLAKFYRLLPKPHASTGPTATAGGATAPEA
SATAAVVGGAADSRSGVDYFGAGLRGGGAGVVPPLDAAGSPRGSHQARET
WPASGGGRGRYGPLVRSAADMERADKDMASRRRLVEGALAGDAEADPADS
AEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTG
LIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPSPKPAEEEHPIDRD
AAAASKVTGFEGLGGGGSGDGGYAGAGGVAWSRDARGPEGLGKVTAGAGG
ARAADDEKLVGVSPADGSEPRTATAWSVTGTGGFKGGRIRGERAGDGGGS
SERIDPRDPRMAVAAAAAASGAAAEACSHETREGGVRTATRTKLLPQEWG
VTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGGDDNRGEGGGGGASGEI
PAAEVRKKKSTRRSRSKGPWTGELKPVARRRYLRQLLIRGDNVVMIWEAP
KS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR039267Lsm11