mRNA_E-siliculosus-1a_F_contig10591.423.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10591.423.1
Unique NamemRNA_E-siliculosus-1a_F_contig10591.423.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.360e-15
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 HFFNTSHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRA 147
            H  NT H+FITFQGKYEEAGPLYERSLAIREK LGPDHP VA +LNNRA
Sbjct:  786 HSSNTHHVFITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRA 834
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.140e-10
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   13 TSHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
            +S + +TFQGK EEAG L+ RSLAIREKALGPDHP VAT+LNN + LLES
Sbjct:   72 SSRLPVTFQGKPEEAGALFNRSLAIREKALGPDHPDVATSLNNLSCLLES 121
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 65.5 bits (158), Expect = 1.920e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGL 153
            QGKYEEA PLY+R+L IRE  LGPDHP+VAT LNN AGL
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.360e-10
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   10 NTSHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
            N   + +  QGKY+EAG LYERSLAIREKALGPDHP VA +LNN A LLES
Sbjct:  822 NNRALLLKAQGKYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLLES 872
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 8.220e-10
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   25 FITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
            F+ FQGKY++AGPLY+RSLAI EK  GPDHP VA +LNNRA LL +
Sbjct:  412 FLIFQGKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAELLRA 457
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-9
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLE 159
            QG Y EA PLYERS AIR+K LGPDHP VAT LNNRAGLL+
Sbjct:  205 QGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLLK 245
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: D8LCT1_ECTSI (Tetratricopeptide repeat family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.200e-9
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
            QG Y+EAG LYERSLAIREKALGP+HPA AT L N+AGLL +
Sbjct:    4 QGNYKEAGRLYERSLAIREKALGPEHPAFATTLTNQAGLLRN 45
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5KWM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.310e-9
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
            QG Y++AG LY+RSLAIREK LGPDHP VA +LNNRAGLL +
Sbjct:  129 QGNYDQAGMLYKRSLAIREKVLGPDHPNVAQSLNNRAGLLSA 170
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.940e-9
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   16 SHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLL 156
            +H++++FQGK +EAGPLY+R++ I E ALGP+H  VATALNNRA LL
Sbjct:  574 THLYVSFQGKLDEAGPLYDRAIRIWEAALGPEHSQVATALNNRARLL 620
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BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.380e-9
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLE 159
            QGKY EA PLYERSLAI+EK LGP+HP VAT+L+NRA LLE
Sbjct:  693 QGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLE 733
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJK0_9PHAE1.360e-1583.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPL8_9PHAE1.140e-1072.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013D295281.920e-1076.92tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5K4D0_9PHAE2.360e-1070.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY6_9PHAE8.220e-1069.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H9_9PHAE1.390e-978.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCT1_ECTSI2.200e-976.19Tetratricopeptide repeat family n=1 Tax=Ectocarpus... [more]
A0A6H5KWM2_9PHAE2.310e-973.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6Q8_9PHAE2.940e-963.83NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI3.380e-978.05NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10591contigE-siliculosus-1a_F_contig10591:897..2227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size771
Model size771
Exons6
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03019,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsCOG0457@1,KOG1840@2759
EggNOG free text desc.determination of stomach left/right asymmetry
KEGG Pathwayko05132,map05132
KEGG koko:K10407
Seed eggNOG ortholog2880.D8LCT1
Seed ortholog evalue8.5e-09
Seed ortholog score67.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10591.423.1prot_E-siliculosus-1a_F_contig10591.423.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10591 897..2227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927560.2796345-CDS-E-siliculosus-1a_F_contig10591:896..10101622927560.2796345-CDS-E-siliculosus-1a_F_contig10591:896..1010Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 897..1010 -
1696318586.1530316-CDS-E-siliculosus-1a_F_contig10591:896..10101696318586.1530316-CDS-E-siliculosus-1a_F_contig10591:896..1010Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 897..1010 -
1622927560.29066-CDS-E-siliculosus-1a_F_contig10591:1261..13901622927560.29066-CDS-E-siliculosus-1a_F_contig10591:1261..1390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 1262..1390 -
1696318586.1685872-CDS-E-siliculosus-1a_F_contig10591:1261..13901696318586.1685872-CDS-E-siliculosus-1a_F_contig10591:1261..1390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 1262..1390 -
1622927560.305285-CDS-E-siliculosus-1a_F_contig10591:1499..16151622927560.305285-CDS-E-siliculosus-1a_F_contig10591:1499..1615Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 1500..1615 -
1696318586.1780405-CDS-E-siliculosus-1a_F_contig10591:1499..16151696318586.1780405-CDS-E-siliculosus-1a_F_contig10591:1499..1615Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 1500..1615 -
1622927560.3202376-CDS-E-siliculosus-1a_F_contig10591:1699..18171622927560.3202376-CDS-E-siliculosus-1a_F_contig10591:1699..1817Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 1700..1817 -
1696318586.1930232-CDS-E-siliculosus-1a_F_contig10591:1699..18171696318586.1930232-CDS-E-siliculosus-1a_F_contig10591:1699..1817Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 1700..1817 -
1622927560.333596-CDS-E-siliculosus-1a_F_contig10591:1830..19591622927560.333596-CDS-E-siliculosus-1a_F_contig10591:1830..1959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 1831..1959 -
1696318586.203323-CDS-E-siliculosus-1a_F_contig10591:1830..19591696318586.203323-CDS-E-siliculosus-1a_F_contig10591:1830..1959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 1831..1959 -
1622927560.3443244-CDS-E-siliculosus-1a_F_contig10591:2062..22271622927560.3443244-CDS-E-siliculosus-1a_F_contig10591:2062..2227Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 2063..2227 -
1696318586.2128909-CDS-E-siliculosus-1a_F_contig10591:2062..22271696318586.2128909-CDS-E-siliculosus-1a_F_contig10591:2062..2227Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10591 2063..2227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10591.423.1

>prot_E-siliculosus-1a_F_contig10591.423.1 ID=prot_E-siliculosus-1a_F_contig10591.423.1|Name=mRNA_E-siliculosus-1a_F_contig10591.423.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=257bp
HFFNTSHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAG
LLESQGKYEEAEPLYERSQAIREKVLGPEHPAQYSLLAITTPLPLVPRYD
DAAPLYQRALAIDEKVLGPDHPDVATDLNNWAGLLSILEPLYIRTIAIGE
KALGPEHPDLATWLNNRAGLLMSQMKYDEAEPLYRRSLAIDEKVYGPDHP
EVATDLNNWARLLSICSSAYDEAGPLYERSLTIREKVYGPDHPAVATALN
NRALLLE
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mRNA from alignment at E-siliculosus-1a_F_contig10591:897..2227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10591.423.1 ID=mRNA_E-siliculosus-1a_F_contig10591.423.1|Name=mRNA_E-siliculosus-1a_F_contig10591.423.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1331bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10591:897..2227- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CATTTCTTCAACACGTCCCATATTTTCATCACGTTCCAGGGCAAGTACGA
GGAAGCCGGGCCGCTGTATGAGCGTTCCCTTGCCATCCGCGAAAAAGCGT
TAGGACCTGATCATCCTGCGGTGGCAACAGCGCTCAACAACCGGGCGGGG
TTGTTGGAAAGTCAGGTGAGAGCCAAATAATGCTTCTAGATTCTCTTCTA
TCTAGAAGGTAATGTTTCTCCGCAGTTCTTGTGCTGAAACAAGACCCACG
CTGTCGACGCCATTCCAGGGGAAGTATGAGGAGGCCGAACCGCTGTATGA
GCGGTCACAGGCCATACGGGAGAAGGTGCTAGGTCCTGAGCACCCTGCGC
AGTATTCTCTACTAGCAATAACCACTCCCCTCCCGCTCGTCCCTCGTGTT
TTAGGGCAAGTACGACGACGCTGCTCCGTTGTACCAACGGGCCCTTGCGA
TAGACGAAAAGGTGTTGGGTCCGGATCACCCCGACGTAGCTACAGATCTC
AACAACTGGGCGGGGTTGTTGAGCATTTGTTCCTCCGCAGGACAAAATTA
TCACTGACCATTTCTACCTTCGCGCTCGCTCTCCATATTATTCTAGGGCA
AGTACGACGAAGTGGAACCGTTGTATATTAGAACCATCGCCATAGGAGAG
AAGGCATTGGGTCCAGAGCATCCAGATCTTGCGACGTGGCTCAACAACCG
GGCGGGGTTGTTGATGAGCCAGATGAAAGTCAAACGATGTCCTAGAAGCT
TCAGGCAGAAAATATCCTCCGCAGTTCTAGACCCGACTTGTGCTGAAACA
CGACTCTACCACGCCGTCGACTGTATTCCAGGGCAAGTATGACGAGGCTG
AGCCTCTGTACAGGCGCTCGCTGGCTATCGACGAGAAAGTGTACGGTCCT
GACCACCCTGAGGTCGCTACAGACCTCAACAACTGGGCGCGGTTGTTGAG
CATTTGTTCCTCCGCAGTGTACTTTATCTTTTTGACCACACTCACATGGC
GCTGCCTTCCGTTTCCAGGGCAAGTATGCGGAGGCAGACCCTCTGTTCCT
TCGAGCCATTGAGATTGGAGAGAAAACGCTGGGCCCTGACCACCCAGATC
TTGCCACCCGGCTCAACAACCGGGCGGGGTTGTTGAGCATTTGTTCCTCC
GCTTTCTCAATTAAACTCTACACTGAACCACGACTTTATGACGCTGCCCA
CCTACATGCAGGGCAAGTACGACGAAGCCGGACCGTTGTATGAACGTTCC
CTTACGATACGCGAGAAGGTATACGGGCCTGACCATCCTGCAGTGGCAAC
AGCGCTCAACAACAGGGCGTTGTTGCTGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10591:897..2227-

>mRNA_E-siliculosus-1a_F_contig10591.423.1 ID=mRNA_E-siliculosus-1a_F_contig10591.423.1|Name=mRNA_E-siliculosus-1a_F_contig10591.423.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10591:897..2227- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CATTTCTTCAACACGTCCCATATTTTCATCACGTTCCAGGGCAAGTACGA
GGAAGCCGGGCCGCTGTATGAGCGTTCCCTTGCCATCCGCGAAAAAGCGT
TAGGACCTGATCATCCTGCGGTGGCAACAGCGCTCAACAACCGGGCGGGG
TTGTTGGAAAGTCAGCATTTCTTCAACACGTCCCATATTTTCATCACGTT
CCAGGGCAAGTACGAGGAAGCCGGGCCGCTGTATGAGCGTTCCCTTGCCA
TCCGCGAAAAAGCGTTAGGACCTGATCATCCTGCGGTGGCAACAGCGCTC
AACAACCGGGCGGGGTTGTTGGAAAGTCAGGGGAAGTATGAGGAGGCCGA
ACCGCTGTATGAGCGGTCACAGGCCATACGGGAGAAGGTGCTAGGTCCTG
AGCACCCTGCGCAGTATTCTCTACTAGCAATAACCACTCCCCTCCCGCTC
GTCCCTCGTGGGAAGTATGAGGAGGCCGAACCGCTGTATGAGCGGTCACA
GGCCATACGGGAGAAGGTGCTAGGTCCTGAGCACCCTGCGCAGTATTCTC
TACTAGCAATAACCACTCCCCTCCCGCTCGTCCCTCGTTACGACGACGCT
GCTCCGTTGTACCAACGGGCCCTTGCGATAGACGAAAAGGTGTTGGGTCC
GGATCACCCCGACGTAGCTACAGATCTCAACAACTGGGCGGGGTTGTTGA
GCATTTTACGACGACGCTGCTCCGTTGTACCAACGGGCCCTTGCGATAGA
CGAAAAGGTGTTGGGTCCGGATCACCCCGACGTAGCTACAGATCTCAACA
ACTGGGCGGGGTTGTTGAGCATTTTGGAACCGTTGTATATTAGAACCATC
GCCATAGGAGAGAAGGCATTGGGTCCAGAGCATCCAGATCTTGCGACGTG
GCTCAACAACCGGGCGGGGTTGTTGATGAGCCAGATGAAATGGAACCGTT
GTATATTAGAACCATCGCCATAGGAGAGAAGGCATTGGGTCCAGAGCATC
CAGATCTTGCGACGTGGCTCAACAACCGGGCGGGGTTGTTGATGAGCCAG
ATGAAATATGACGAGGCTGAGCCTCTGTACAGGCGCTCGCTGGCTATCGA
CGAGAAAGTGTACGGTCCTGACCACCCTGAGGTCGCTACAGACCTCAACA
ACTGGGCGCGGTTGTTGAGCATTTGTTCCTCCGCATATGACGAGGCTGAG
CCTCTGTACAGGCGCTCGCTGGCTATCGACGAGAAAGTGTACGGTCCTGA
CCACCCTGAGGTCGCTACAGACCTCAACAACTGGGCGCGGTTGTTGAGCA
TTTGTTCCTCCGCATACGACGAAGCCGGACCGTTGTATGAACGTTCCCTT
ACGATACGCGAGAAGGTATACGGGCCTGACCATCCTGCAGTGGCAACAGC
GCTCAACAACAGGGCGTTGTTGCTGGAGTACGACGAAGCCGGACCGTTGT
ATGAACGTTCCCTTACGATACGCGAGAAGGTATACGGGCCTGACCATCCT
GCAGTGGCAACAGCGCTCAACAACAGGGCGTTGTTGCTGGAG
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