prot_E-siliculosus-1a_F_contig1053.383.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1053.383.1
Unique Nameprot_E-siliculosus-1a_F_contig1053.383.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length298
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: D8LRF8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF8_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 4.520e-115
Identity = 225/237 (94.94%), Postives = 230/237 (97.05%), Query Frame = 0
Query:   59 MTVSTAAQLATLVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAGDGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGEDVSLLVSSCNFTANRASLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEGPNSGWDDFDVGVGGAVGLSGGTPQLAFHECELRHNNATDDGGAVYSDSGASITVNSTLLDGNWAG 295
            MTVSTAAQLATLVESTNCSDGAFVVSWQGALTL EPVVVGNSTTLSIEG GDG+VLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGE VSLLVSSCNFTANRA LDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEGPNS WD+FDVGVGGAVGLSGGTPQLAFHECELRHNNAT  GGAVYSD+GAS+T+NSTLLDGNWAG
Sbjct:    1 MTVSTAAQLATLVESTNCSDGAFVVSWQGALTLSEPVVVGNSTTLSIEGVGDGSVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGEHVSLLVSSCNFTANRAPLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEGPNSAWDNFDVGVGGAVGLSGGTPQLAFHECELRHNNATSYGGAVYSDAGASVTMNSTLLDGNWAG 237          
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A6H5JWU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU3_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.700e-64
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0
Query:   59 MTVSTAAQLATLVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAGDGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGEDVSLLVSSCNFTANRASLD 176
            M VSTAAQLATLVE+TNCS+GAFVVSWQGALTL EPV+VGNSTTLS+EG GDGAVLDGGGGSRLFQVSGGASLFL+NLELRN SAPYY+GGGAIYADGEDVSLLVSSCNFT NRA LD
Sbjct:    1 MNVSTAAQLATLVENTNCSNGAFVVSWQGALTLSEPVLVGNSTTLSVEGVGDGAVLDGGGGSRLFQVSGGASLFLENLELRNASAPYYSGGGAIYADGEDVSLLVSSCNFTGNRAPLD 118          
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A6H5JUM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM3_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 6.840e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0
Query:  215 AVTARKTLFLANVAEGPNSGWDDFDVGVGGAVGLSGGTPQLAFHECELRHNNATDDGGAVYSDSGASITVNSTLLDGNWAGGYG 298
            AVTA+KTLFL+NVAEGPNSGWDDFDVGVGGAVGLSGGTPQ+AFHECELR NNATD+GGAVYSDSGASITV STLLDGNWAGGYG
Sbjct:    7 AVTAQKTLFLSNVAEGPNSGWDDFDVGVGGAVGLSGGTPQVAFHECELRRNNATDNGGAVYSDSGASITVTSTLLDGNWAGGYG 90          
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A836CF41_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF41_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.890e-9
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   70 LVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAG---DGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPY--YNGGGAIYADGEDVSLLVSSCNFTANR 172
            L E+T C      V W+G + L EP++VGN T+L I+G G   D A + G   +++  V  GAS+ L++LELR+G A     +G G       D  LLV +C F  NR
Sbjct:   40 LTEATVCPGQNITVKWRGFVGLTEPIIVGNGTSLVIDGVGTESDPAAISGQNKTQVLHVQKGASVTLRHLELRDGRAMVDGISGEGGAVRVFRDGQLLVEACQFRLNR 147          
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A836CDQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-8
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 0
Query:   70 LVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAG---DGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGEDVSLLVSSCNFTANRAS 174
            L E+  C D    V W+G + + EP++VG+ TTL I G G   + A + G   ++L +V  GAS+ LQ L LR+G       GGAI+ DG+      S+  F  N A+
Sbjct:   45 LTEAAACRDQNITVQWRGFVNVTEPIIVGDGTTLVINGWGADSEPAAISGQHATQLLRVQNGASVTLQELRLRDGFVEAGGDGGAIFNDGD---FTCSNSTFAINTAA 149          
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A835Z719_9STRA (UCH domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z719_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.640e-8
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 0
Query:   70 LVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAG---DGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPY--YNGGGAIYADGEDVSLLVSSCNFTANR 172
            L E+T C      V W+G + L EP++VGN T+L I+G G   D A + G   +++  V  GAS+ L++LELR G A     +G G       D  LLV +C F  NR
Sbjct:   40 LTEATVCPGQNITVKWRGFVGLTEPIIVGNGTSLVIDGVGTESDPAAISGQNKTQVLHVQKGASVTLRHLELRVGRAMVDGISGEGGAVRVFRDGQLLVEACQFRLNR 147          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LRF8_ECTSI4.520e-11594.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWU3_9PHAE1.700e-6489.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUM3_9PHAE6.840e-4292.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CF41_9STRA4.890e-938.89Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CDQ4_9STRA1.470e-837.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z719_9STRA1.640e-838.89UCH domain-containing protein n=2 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 166..188
e-value: 0.0016
score: 16.2
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 53..298
e-value: 3.6E-8
score: 35.1
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 52..295

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1053contigE-siliculosus-1a_F_contig1053:4225..6658 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1053.383.1mRNA_E-siliculosus-1a_F_contig1053.383.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1053 4225..6658 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1053.383.1 ID=prot_E-siliculosus-1a_F_contig1053.383.1|Name=mRNA_E-siliculosus-1a_F_contig1053.383.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=298bp
SSSSINSRGATSTLGTATTTTTTTTSALLLSLAVFAGRFSSSFAQQAAPP
ACSPASAEMTVSTAAQLATLVESTNCSDGAFVVSWQGALTLPEPVVVGNS
TTLSIEGAGDGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGG
AIYADGEDVSLLVSSCNFTANRASLDGGAILSTGAGSIIALNDCRFEGNT
AEHQGGAVMAISASAVTARKTLFLANVAEGPNSGWDDFDVGVGGAVGLSG
GTPQLAFHECELRHNNATDDGGAVYSDSGASITVNSTLLDGNWAGGYG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR003368POMP_repeat