mRNA_E-siliculosus-1a_F_contig1646.3657.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1646.3657.1
Unique NamemRNA_E-siliculosus-1a_F_contig1646.3657.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.960e-76
Identity = 124/136 (91.18%), Postives = 126/136 (92.65%), Query Frame = 1
Query:    1 MPLHIPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEKYCSRLVFTGKCVAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
            MPLHIPVAQARSGKLVVPSCSK EGSFRCLE SQNL LKQGKIKVFHFAHRHLSPGCSGGGES LHKAAK LVEKYCSRLVF G C+AGEHSIARQYV+CEA QEYRYDTT  YAADVAIFQNGVISAIVEVCASH
Sbjct:    1 MPLHIPVAQARSGKLVVPSCSKAEGSFRCLEYSQNLALKQGKIKVFHFAHRHLSPGCSGGGESALHKAAKLLVEKYCSRLVFIGVCIAGEHSIARQYVNCEAKQEYRYDTTNNYAADVAIFQNGVISAIVEVCASH 136          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A6H5JQD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD6_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.890e-39
Identity = 75/134 (55.97%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   10 HIPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLH-KAAKSLVEKYCSRLVFTGKCVAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
            HIP+ Q  SGKLVV SCSK EG F CL C   LVL QGK+ V+HFAH   S GCSG GES  H KAAK LVEKYCSRL                Y DC+A QEYRY     Y+ADVAIFQN     IVE+  +H
Sbjct:   20 HIPIVQTESGKLVVSSCSKAEGPFTCLGCGGGLVLLQGKVNVYHFAHCQHSLGCSGWGESAQHNKAAKLLVEKYCSRL----------------YTDCDAKQEYRYHNNINYSADVAIFQNHSFVPIVEISVAH 137          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.500e-11
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 MPLHIPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRH 156
            M LHIPVA+  SGKLVVPSCSK EG F+CLEC+  LVLKQG +       RH
Sbjct:    1 MSLHIPVAETPSGKLVVPSCSKAEGPFKCLECAGALVLKQGTLTHSPLEVRH 52          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A6C0HU37_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HU37_9ZZZZ)

HSP 1 Score: 62.4 bits (150), Expect = 1.210e-8
Identity = 39/136 (28.68%), Postives = 65/136 (47.79%), Query Frame = 1
Query:   31 RSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCS---GGGESVLHKAAKSLVEKYCSR---LVFTGKCVA----GEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
            ++ K   P+ +  +  F C++C ++++++QGKI+V HFAH      C+      ES +HK AK L++        L    KC+      E+ I           EYR++      ADVA  ++  I  I E+C +H
Sbjct:   13 KTNKYTHPTQANKKDEFICIDCGKDVIIRQGKIRVHHFAHFKEDLKCNFYNSPNESQIHKNAKLLLKYILENKIPLTIYNKCIKCNKLDEYDIPEISEKSSIIIEYRFEYNGLKIADVAYIEDNEILCIFEICNTH 148          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A5V3MQQ2_SALER (Competence protein CoiA n=6 Tax=Enterobacterales TaxID=91347 RepID=A0A5V3MQQ2_SALER)

HSP 1 Score: 59.7 bits (143), Expect = 5.760e-8
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 1
Query:   28 ARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEK 225
            A +GK+    C K EG F C+ C + LVLK+G+IKV HFAH+       G GE+  H+  K  + K
Sbjct:    8 ATNGKVFAKDCEKEEGPFFCIGCKKELVLKKGRIKVHHFAHKPPFSCNRGQGETEKHRECKESIYK 73          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A6C0IDZ5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IDZ5_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 1.050e-7
Identity = 37/136 (27.21%), Postives = 65/136 (47.79%), Query Frame = 1
Query:   31 RSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCS---GGGESVLHKAAKSLVEKYCS---RLVFTGKC----VAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
            ++ +   PS +  +  F C++C  +++++QGKI++ HFAH      C+      ES +HK AK L++       +L    KC       E+ I     +     EYR++      AD+A  ++  I  I E+C +H
Sbjct:   13 KTNQYTKPSHANKQDEFICIDCGNDVIIRQGKIRIHHFAHCKEDIKCNFYNSPNESQIHKNAKLLLKYILENKIQLKIKRKCNKXXXXDEYDIPEVSENSSIIIEYRFEYNGVKIADIAYTEDNEILCIFEICNTH 148          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: UPI0003F6FBFC (hypothetical protein n=1 Tax=Thermicanus aegyptius TaxID=94009 RepID=UPI0003F6FBFC)

HSP 1 Score: 58.5 bits (140), Expect = 2.090e-7
Identity = 44/144 (30.56%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   13 IPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEKY--------CSRLVFTGKC----VAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
            +P+A     KL  P  +K + ++ C  C + +VL+QG ++V HFAH+  S  C+   E++LHK AK LV+K             V   +C        H +  +  D  A  EYR   ++ Y  DVA+    V+   VE+  +H
Sbjct:    4 VPLAIDEESKLYRPEEAKKDKTYFCPVCGEPVVLRQGNVRVAHFAHK-TSIKCNQ--ETILHKTAKLLVQKSIYDWKAGRADTPVIQRQCRICHTVENHPLPGEITD--AILEYRL--SEGYVVDVALMAGNVVKIAVEIKVTH 140          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A7Y2L5X6_9THEO (Uncharacterized protein n=1 Tax=Caldanaerobacter subterraneus TaxID=911092 RepID=A0A7Y2L5X6_9THEO)

HSP 1 Score: 57.0 bits (136), Expect = 7.040e-7
Identity = 44/144 (30.56%), Postives = 67/144 (46.53%), Query Frame = 1
Query:   13 IPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEKYCSRL--------VFTGKCVA----GEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
            IP A  + G L     +  E  + C  C + +VL++GK++  HFAH+  +  CS   E+V+HK AK L+++             V   KC       E  I  Q    +A  EYR    + Y ADVA+  N  I  ++E+  +H
Sbjct:    3 IPYAVDQEGNLYNAKEAGKEKQYYCPSCGEKVVLRKGKVRTAHFAHK-ANAKCSE--ETVIHKTAKLLIQQVIQSWKKENKKAPVIIVKCPICYNPSEVRIVEQIRIEDALLEYRLP--EGYIADVALIANNKIKMVIEIKVTH 141          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A2H2YMA9_9CYAN (Uncharacterized protein n=3 Tax=Calothrix TaxID=1186 RepID=A0A2H2YMA9_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.280e-6
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   19 VAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEK 225
            VA+  +G+L+  S +   GS+ C  C Q+ VL++GK K  HFAH+ LSP C+   E+ LH + K+L+ +
Sbjct:   12 VAETPTGELIKASDAHKGGSYACPACKQSFVLRRGKRKRPHFAHKALSPNCTP--ETALHHSFKTLMHE 78          
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: UPI001CF54004 (hypothetical protein n=1 Tax=Burkholderia arboris TaxID=488730 RepID=UPI001CF54004)

HSP 1 Score: 54.3 bits (129), Expect = 7.130e-6
Identity = 41/136 (30.15%), Postives = 61/136 (44.85%), Query Frame = 1
Query:    7 LHIPVAQARSGKLVVPSC--SKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEKYCSRLVFTGKCVAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
            + IP A    G+LV         EG F C  C   ++LKQG++  +HFAHR   P C+ G E+ LH  AK ++ ++    V    CV  E S+      C   +  R+D       +V  + +G+    V  C  H
Sbjct:    1 MTIPFALNPLGRLVAARDLPKHAEGPFLCAACRSPVILKQGEVMTWHFAHRP-GPDCASGFETALHLLAKQILLEHRHLRVPALVCV-DESSLDEDITVCN-ERTMRWDAP----GEVEKWMDGIRPDFVVDCGDH 129          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G1E0_ECTSI1.960e-7691.18EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JQD6_9PHAE3.890e-3955.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8T5_9PHAE2.500e-1163.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6C0HU37_9ZZZZ1.210e-828.68Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A5V3MQQ2_SALER5.760e-842.42Competence protein CoiA n=6 Tax=Enterobacterales T... [more]
A0A6C0IDZ5_9ZZZZ1.050e-727.21Uncharacterized protein n=1 Tax=viral metagenome T... [more]
UPI0003F6FBFC2.090e-730.56hypothetical protein n=1 Tax=Thermicanus aegyptius... [more]
A0A7Y2L5X6_9THEO7.040e-730.56Uncharacterized protein n=1 Tax=Caldanaerobacter s... [more]
A0A2H2YMA9_9CYAN1.280e-640.58Uncharacterized protein n=3 Tax=Calothrix TaxID=11... [more]
UPI001CF540047.130e-630.15hypothetical protein n=1 Tax=Burkholderia arboris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1646contigE-siliculosus-1a_F_contig1646:14104..14511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size408
Model size408
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928153.2643373-CDS-E-siliculosus-1a_F_contig1646:14103..145111622928153.2643373-CDS-E-siliculosus-1a_F_contig1646:14103..14511Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 14104..14511 -
1696318825.7951233-CDS-E-siliculosus-1a_F_contig1646:14103..145111696318825.7951233-CDS-E-siliculosus-1a_F_contig1646:14103..14511Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 14104..14511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1646.3657.1prot_E-siliculosus-1a_F_contig1646.3657.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1646 14104..14511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1646.3657.1

>prot_E-siliculosus-1a_F_contig1646.3657.1 ID=prot_E-siliculosus-1a_F_contig1646.3657.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp
MPLHIPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAH
RHLSPGCSGGGESVLHKAAKSLVEKYCSRLVFTGKCVAGEHSIARQYVDC
EANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH
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mRNA from alignment at E-siliculosus-1a_F_contig1646:14104..14511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1646.3657.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3657.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=408bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:14104..14511- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCCTCCACATCCCCGTGGCCCAAGCCCGATCGGGCAAACTCGTGGT GCCCTCCTGCTCGAAGACGGAGGGCTCTTTCAGATGCCTCGAGTGTTCCC AAAACCTGGTTCTGAAACAGGGCAAGATAAAGGTTTTCCACTTCGCGCAC CGCCACCTGTCGCCCGGCTGTTCGGGCGGCGGCGAGTCGGTCCTTCACAA GGCGGCGAAGTCGCTCGTTGAAAAGTATTGTTCGCGCCTCGTTTTCACAG GCAAGTGTGTCGCAGGAGAGCACAGCATCGCGCGACAGTACGTGGACTGC GAAGCGAACCAGGAGTATCGCTACGACACGACCAAAAAGTACGCGGCGGA CGTAGCCATCTTTCAAAACGGTGTCATAAGTGCTATCGTAGAGGTGTGCG CATCTCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1646:14104..14511-

>mRNA_E-siliculosus-1a_F_contig1646.3657.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3657.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:14104..14511- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCCTCCACATCCCCGTGGCCCAAGCCCGATCGGGCAAACTCGTGGT
GCCCTCCTGCTCGAAGACGGAGGGCTCTTTCAGATGCCTCGAGTGTTCCC
AAAACCTGGTTCTGAAACAGGGCAAGATAAAGGTTTTCCACTTCGCGCAC
CGCCACCTGTCGCCCGGCTGTTCGGGCGGCGGCGAGTCGGTCCTTCACAA
GGCGGCGAAGTCGCTCGTTGAAAAGTATTGTTCGCGCCTCGTTTTCACAG
GCAAGTGTGTCGCAGGAGAGCACAGCATCGCGCGACAGTACGTGGACTGC
GAAGCGAACCAGGAGTATCGCTACGACACGACCAAAAAGTACGCGGCGGA
CGTAGCCATCTTTCAAAACGGTGTCATAAGTGCTATCGTAGAGGTGTGCG
CATCTCACATGCCCCTCCACATCCCCGTGGCCCAAGCCCGATCGGGCAAA
CTCGTGGTGCCCTCCTGCTCGAAGACGGAGGGCTCTTTCAGATGCCTCGA
GTGTTCCCAAAACCTGGTTCTGAAACAGGGCAAGATAAAGGTTTTCCACT
TCGCGCACCGCCACCTGTCGCCCGGCTGTTCGGGCGGCGGCGAGTCGGTC
CTTCACAAGGCGGCGAAGTCGCTCGTTGAAAAGTATTGTTCGCGCCTCGT
TTTCACAGGCAAGTGTGTCGCAGGAGAGCACAGCATCGCGCGACAGTACG
TGGACTGCGAAGCGAACCAGGAGTATCGCTACGACACGACCAAAAAGTAC
GCGGCGGACGTAGCCATCTTTCAAAACGGTGTCATAAGTGCTATCGTAGA
GGTGTGCGCATCTCAC
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