mRNA_E-siliculosus-1a_F_contig1646.3657.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI) HSP 1 Score: 256 bits (653), Expect = 1.960e-76 Identity = 124/136 (91.18%), Postives = 126/136 (92.65%), Query Frame = 1
Query: 1 MPLHIPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEKYCSRLVFTGKCVAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
MPLHIPVAQARSGKLVVPSCSK EGSFRCLE SQNL LKQGKIKVFHFAHRHLSPGCSGGGES LHKAAK LVEKYCSRLVF G C+AGEHSIARQYV+CEA QEYRYDTT YAADVAIFQNGVISAIVEVCASH
Sbjct: 1 MPLHIPVAQARSGKLVVPSCSKAEGSFRCLEYSQNLALKQGKIKVFHFAHRHLSPGCSGGGESALHKAAKLLVEKYCSRLVFIGVCIAGEHSIARQYVNCEAKQEYRYDTTNNYAADVAIFQNGVISAIVEVCASH 136
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A6H5JQD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD6_9PHAE) HSP 1 Score: 139 bits (351), Expect = 3.890e-39 Identity = 75/134 (55.97%), Postives = 82/134 (61.19%), Query Frame = 1
Query: 10 HIPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLH-KAAKSLVEKYCSRLVFTGKCVAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
HIP+ Q SGKLVV SCSK EG F CL C LVL QGK+ V+HFAH S GCSG GES H KAAK LVEKYCSRL Y DC+A QEYRY Y+ADVAIFQN IVE+ +H
Sbjct: 20 HIPIVQTESGKLVVSSCSKAEGPFTCLGCGGGLVLLQGKVNVYHFAHCQHSLGCSGWGESAQHNKAAKLLVEKYCSRL----------------YTDCDAKQEYRYHNNINYSADVAIFQNHSFVPIVEISVAH 137
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 2.500e-11 Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 1 MPLHIPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRH 156
M LHIPVA+ SGKLVVPSCSK EG F+CLEC+ LVLKQG + RH
Sbjct: 1 MSLHIPVAETPSGKLVVPSCSKAEGPFKCLECAGALVLKQGTLTHSPLEVRH 52
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A6C0HU37_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HU37_9ZZZZ) HSP 1 Score: 62.4 bits (150), Expect = 1.210e-8 Identity = 39/136 (28.68%), Postives = 65/136 (47.79%), Query Frame = 1
Query: 31 RSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCS---GGGESVLHKAAKSLVEKYCSR---LVFTGKCVA----GEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
++ K P+ + + F C++C ++++++QGKI+V HFAH C+ ES +HK AK L++ L KC+ E+ I EYR++ ADVA ++ I I E+C +H
Sbjct: 13 KTNKYTHPTQANKKDEFICIDCGKDVIIRQGKIRVHHFAHFKEDLKCNFYNSPNESQIHKNAKLLLKYILENKIPLTIYNKCIKCNKLDEYDIPEISEKSSIIIEYRFEYNGLKIADVAYIEDNEILCIFEICNTH 148
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A5V3MQQ2_SALER (Competence protein CoiA n=6 Tax=Enterobacterales TaxID=91347 RepID=A0A5V3MQQ2_SALER) HSP 1 Score: 59.7 bits (143), Expect = 5.760e-8 Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 28 ARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEK 225
A +GK+ C K EG F C+ C + LVLK+G+IKV HFAH+ G GE+ H+ K + K
Sbjct: 8 ATNGKVFAKDCEKEEGPFFCIGCKKELVLKKGRIKVHHFAHKPPFSCNRGQGETEKHRECKESIYK 73
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A6C0IDZ5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IDZ5_9ZZZZ) HSP 1 Score: 59.7 bits (143), Expect = 1.050e-7 Identity = 37/136 (27.21%), Postives = 65/136 (47.79%), Query Frame = 1
Query: 31 RSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCS---GGGESVLHKAAKSLVEKYCS---RLVFTGKC----VAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
++ + PS + + F C++C +++++QGKI++ HFAH C+ ES +HK AK L++ +L KC E+ I + EYR++ AD+A ++ I I E+C +H
Sbjct: 13 KTNQYTKPSHANKQDEFICIDCGNDVIIRQGKIRIHHFAHCKEDIKCNFYNSPNESQIHKNAKLLLKYILENKIQLKIKRKCNKXXXXDEYDIPEVSENSSIIIEYRFEYNGVKIADIAYTEDNEILCIFEICNTH 148
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: UPI0003F6FBFC (hypothetical protein n=1 Tax=Thermicanus aegyptius TaxID=94009 RepID=UPI0003F6FBFC) HSP 1 Score: 58.5 bits (140), Expect = 2.090e-7 Identity = 44/144 (30.56%), Postives = 69/144 (47.92%), Query Frame = 1
Query: 13 IPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEKY--------CSRLVFTGKC----VAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
+P+A KL P +K + ++ C C + +VL+QG ++V HFAH+ S C+ E++LHK AK LV+K V +C H + + D A EYR ++ Y DVA+ V+ VE+ +H
Sbjct: 4 VPLAIDEESKLYRPEEAKKDKTYFCPVCGEPVVLRQGNVRVAHFAHK-TSIKCNQ--ETILHKTAKLLVQKSIYDWKAGRADTPVIQRQCRICHTVENHPLPGEITD--AILEYRL--SEGYVVDVALMAGNVVKIAVEIKVTH 140
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A7Y2L5X6_9THEO (Uncharacterized protein n=1 Tax=Caldanaerobacter subterraneus TaxID=911092 RepID=A0A7Y2L5X6_9THEO) HSP 1 Score: 57.0 bits (136), Expect = 7.040e-7 Identity = 44/144 (30.56%), Postives = 67/144 (46.53%), Query Frame = 1
Query: 13 IPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEKYCSRL--------VFTGKCVA----GEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
IP A + G L + E + C C + +VL++GK++ HFAH+ + CS E+V+HK AK L+++ V KC E I Q +A EYR + Y ADVA+ N I ++E+ +H
Sbjct: 3 IPYAVDQEGNLYNAKEAGKEKQYYCPSCGEKVVLRKGKVRTAHFAHK-ANAKCSE--ETVIHKTAKLLIQQVIQSWKKENKKAPVIIVKCPICYNPSEVRIVEQIRIEDALLEYRLP--EGYIADVALIANNKIKMVIEIKVTH 141
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: A0A2H2YMA9_9CYAN (Uncharacterized protein n=3 Tax=Calothrix TaxID=1186 RepID=A0A2H2YMA9_9CYAN) HSP 1 Score: 56.2 bits (134), Expect = 1.280e-6 Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 19 VAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEK 225
VA+ +G+L+ S + GS+ C C Q+ VL++GK K HFAH+ LSP C+ E+ LH + K+L+ +
Sbjct: 12 VAETPTGELIKASDAHKGGSYACPACKQSFVLRRGKRKRPHFAHKALSPNCTP--ETALHHSFKTLMHE 78
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Match: UPI001CF54004 (hypothetical protein n=1 Tax=Burkholderia arboris TaxID=488730 RepID=UPI001CF54004) HSP 1 Score: 54.3 bits (129), Expect = 7.130e-6 Identity = 41/136 (30.15%), Postives = 61/136 (44.85%), Query Frame = 1
Query: 7 LHIPVAQARSGKLVVPSC--SKTEGSFRCLECSQNLVLKQGKIKVFHFAHRHLSPGCSGGGESVLHKAAKSLVEKYCSRLVFTGKCVAGEHSIARQYVDCEANQEYRYDTTKKYAADVAIFQNGVISAIVEVCASH 408
+ IP A G+LV EG F C C ++LKQG++ +HFAHR P C+ G E+ LH AK ++ ++ V CV E S+ C + R+D +V + +G+ V C H
Sbjct: 1 MTIPFALNPLGRLVAARDLPKHAEGPFLCAACRSPVILKQGEVMTWHFAHRP-GPDCASGFETALHLLAKQILLEHRHLRVPALVCV-DESSLDEDITVCN-ERTMRWDAP----GEVEKWMDGIRPDFVVDCGDH 129 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1646.3657.1 >prot_E-siliculosus-1a_F_contig1646.3657.1 ID=prot_E-siliculosus-1a_F_contig1646.3657.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp MPLHIPVAQARSGKLVVPSCSKTEGSFRCLECSQNLVLKQGKIKVFHFAHback to top mRNA from alignment at E-siliculosus-1a_F_contig1646:14104..14511- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1646.3657.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3657.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=408bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:14104..14511- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1646:14104..14511- >mRNA_E-siliculosus-1a_F_contig1646.3657.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3657.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:14104..14511- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |