mRNA_E-siliculosus-1a_F_contig10.36.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10.36.1
Unique NamemRNA_E-siliculosus-1a_F_contig10.36.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A6H5KHY4_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHY4_9PHAE)

HSP 1 Score: 473 bits (1216), Expect = 1.160e-161
Identity = 235/255 (92.16%), Postives = 241/255 (94.51%), Query Frame = 2 
Query:   44 MFRIFDPYAMALSLLVGGVGFCTTFYFNTEMSEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKILEGHGSGGA-----VAEGEDGKFQAPSPVGVPGLVTVKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVETYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMDDDEAREDTVEGEGVRT 793
            MFRIFDPYA+ALSLLVGGVGFCTTFYFNTE+SEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKIL GHG G        AEGEDGKFQ PSPVGVPGLVTVKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYF+ETYQRSLRPVTLLADEQGVLTAGYQ ++RAK IPHCYIVRG SGDTGAGAGFGVVEWHGHPARLEAALGYLMD+DEAREDTVEGEGVRT
Sbjct:    1 MFRIFDPYAVALSLLVGGVGFCTTFYFNTEISEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKILGGHGGGXXXXXXKAAEGEDGKFQVPSPVGVPGLVTVKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFIETYQRSLRPVTLLADEQGVLTAGYQRENRAKAIPHCYIVRGVSGDTGAGAGFGVVEWHGHPARLEAALGYLMDNDEAREDTVEGEGVRT 255
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A7S2Y039_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y039_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.170e-23
Identity = 78/247 (31.58%), Postives = 121/247 (48.99%), Query Frame = 2 
Query:   17 LLATKKGATMFRIFDPYAMALSLLVGGVGFCTTF-YFNTEMSEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKILEGHGSGGAVAEGEDGKFQAPSPVGVPGLVTVKGPPLAAPKAGSLAVVF-FFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVETYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMDDD 751
            +  TKK     R FD +A+  +L++  +GFC ++ Y   E   +   E   P+   +YVY RNARFF+ D + ++      G G A  +        P    + GL  ++G   ++P  GS  +V  F+ATWC   ++ L       A + D+G+    +++E    LR F+ +  RSL     LA E G LT  YQ     KT+PH Y++ G SG          VEWHGHP +++A L  ++ +D
Sbjct:   22 MAGTKK--QKIRFFDAFALIQALVLAAIGFCLSWWYLGWEYLTYR--EFLLPIGCAVYVYMRNARFFQEDGDGTS------GKGSAKDQ-----ISKPLAAELEGLTFLQG---SSPSMGSGPIVLLFWATWCGHSKKSLVPLNRTHASFKDQGVQVVAISREEVGVLREFLPSVGRSL--AYALASEDGRLTQKYQRAFGVKTVPHAYVI-GRSGR---------VEWHGHPTQIDAVLDEVISND 238
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A7S0LWB5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LWB5_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 8.720e-8
Identity = 45/136 (33.09%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:  329 LVTVKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVETY-QRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHP-ARLEAAL 730
            L  V+G     PKAG++ VV F+ATWC  C + +P    +  RY D+G+   G++ E  +++R FVE   Q+   PV    D + V  + Y  Q     IP  ++V             G V W GHP A L+ A+
Sbjct:   64 LTYVQGDAAERPKAGTVTVVEFWATWCPPCVRSIPHLSELYTRYKDQGLDVVGISNESVDKVRPFVEKMGQKFNYPVA--CDPRSVNASNYPVQG----IPAAFLV----------GRDGTVLWSGHPMAGLDQAV 183
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: UPI001E3F1CAD (TlpA family protein disulfide reductase n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E3F1CAD)

HSP 1 Score: 65.5 bits (158), Expect = 1.330e-7
Identity = 40/142 (28.17%), Postives = 65/142 (45.77%), Query Frame = 2 
Query:  365 KAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVE---------TYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMDDDEARE 763
            K G++ VV F+ATWC  C Q +P  + +  +Y D+G+    ++ E  E +   ++         T++      TL  D  G  T  Y    +   IP  ++V    G TG      ++EW GHP RL+  L  +++    RE
Sbjct:   66 KEGNVYVVEFWATWCGPCIQSMPHLVELQEKYRDQGVQIVSISDEDLETVEGILDRDYPGKEGVTFKELTSAYTLTVDPDGSSTDDYMRAAQQNGIPAAFLV----GKTG------LIEWIGHPMRLDDPLEQVLEGTWDRE 197
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A517MLY1_9BACT (Thiol-disulfide oxidoreductase ResA n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MLY1_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.600e-5
Identity = 40/142 (28.17%), Postives = 61/142 (42.96%), Query Frame = 2 
Query:  365 KAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVE---------TYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMDDDEARE 763
            ++G + +V F+ATWC  C   +P       +Y D+G+    V++E  E +  F+E         TY+      +L  D        Y        IP  +IV G SG         ++EW GHP R+E  L  ++ D   RE
Sbjct:   63 ESGKVYIVEFWATWCGPCIAAMPHLSETQQKYADQGVQLISVSREPLETVETFLEKPVRNEEDKTYRELTSTYSLTCDPDRSTFEDYFQAAGQTGIPCAFIV-GKSG---------LIEWIGHPMRMEEPLEQVLADKWDRE 194
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A5M6D8G9_9BACT (Redoxin domain-containing protein n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6D8G9_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.020e-5
Identity = 41/149 (27.52%), Postives = 65/149 (43.62%), Query Frame = 2 
Query:  368 AGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFV--------ETYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMD---DDEAREDTVEGE 781
            +G++ VV F+ATWC  C   +P    +   Y D G+    V+ E  +E+   +        E++       +L  D  G     Y      + IP  ++V    G TG      +VEW GHP +L+  L  ++D   D EA +  +E E
Sbjct:   58 SGTVYVVEFWATWCGPCISSMPHLAQLQNEYRDRGVRIVSVSDESLDEVEALLKKPYPQKEESFADVTSAYSLTTDPDGSTHRDYMQAAEQRGIPTSFVV----GKTG------LVEWIGHPMKLDEPLAAVVDGTWDREAFKQEMERE 196
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A517SB39_9PLAN (Thiol-disulfide oxidoreductase ResA n=1 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SB39_9PLAN)

HSP 1 Score: 58.2 bits (139), Expect = 2.600e-5
Identity = 41/142 (28.87%), Postives = 61/142 (42.96%), Query Frame = 2 
Query:  338 VKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVETYQR------SLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMD 745
            VKG  +   K G + VV F+ATWC  C   +P    +  +Y D+     GV+ E   ++  F++  Q+      +     L  D  G     Y      + IP  +IV             GVVEW GHPAR++  L  ++D
Sbjct:   60 VKGEKVDGFKPGQVYVVEFWATWCGPCLATMPHLAELQTKYGDKA-QMIGVSTEETSKVADFLKDEQKEGVTWDATITYRLAMDVDGKTNEAYMSAAGERGIPTAFIV----------GREGVVEWIGHPARMDEPLAKVVD 190
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KHY4_9PHAE1.160e-16192.16Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2Y039_9STRA8.170e-2331.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0LWB5_9CRYP8.720e-833.09Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
UPI001E3F1CAD1.330e-728.17TlpA family protein disulfide reductase n=2 Tax=un... [more]
A0A517MLY1_9BACT1.600e-528.17Thiol-disulfide oxidoreductase ResA n=1 Tax=Roseim... [more]
A0A5M6D8G9_9BACT2.020e-527.52Redoxin domain-containing protein n=1 Tax=Roseicon... [more]
A0A517SB39_9PLAN2.600e-528.87Thiol-disulfide oxidoreductase ResA n=1 Tax=Caulif... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10contigE-siliculosus-1a_F_contig10:20297..24537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size753
Model size1953
Exons4
Ec32 orthologEc-23_002130.1
Ec32 ortholog descriptionAlkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelFungi
COG Functional cat.O
EggNOG OGs2BGJX@1,2S19K@2759,3A8YD@33154,3PE1M@4751
EggNOG free text desc.Thioredoxin-like
Seed eggNOG ortholog109760.SPPG_03113T0
Seed ortholog evalue1.6e-07
Seed ortholog score63.5
Taxonomic scopeFungi
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10.36.1prot_E-siliculosus-1a_F_contig10.36.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10 20340..23380 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927502.1588478-UTR-E-siliculosus-1a_F_contig10:20296..203391622927502.1588478-UTR-E-siliculosus-1a_F_contig10:20296..20339Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10 20297..20339 +
1696318554.037955-UTR-E-siliculosus-1a_F_contig10:20296..203391696318554.037955-UTR-E-siliculosus-1a_F_contig10:20296..20339Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10 20297..20339 +
1622927502.2331278-UTR-E-siliculosus-1a_F_contig10:23380..245371622927502.2331278-UTR-E-siliculosus-1a_F_contig10:23380..24537Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10 23381..24537 +
1696318554.1074789-UTR-E-siliculosus-1a_F_contig10:23380..245371696318554.1074789-UTR-E-siliculosus-1a_F_contig10:23380..24537Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10 23381..24537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927502.1753588-CDS-E-siliculosus-1a_F_contig10:20339..204771622927502.1753588-CDS-E-siliculosus-1a_F_contig10:20339..20477Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 20340..20477 +
1696318554.0591245-CDS-E-siliculosus-1a_F_contig10:20339..204771696318554.0591245-CDS-E-siliculosus-1a_F_contig10:20339..20477Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 20340..20477 +
1622927502.1919363-CDS-E-siliculosus-1a_F_contig10:21671..219601622927502.1919363-CDS-E-siliculosus-1a_F_contig10:21671..21960Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 21672..21960 +
1696318554.06946-CDS-E-siliculosus-1a_F_contig10:21671..219601696318554.06946-CDS-E-siliculosus-1a_F_contig10:21671..21960Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 21672..21960 +
1622927502.203181-CDS-E-siliculosus-1a_F_contig10:22706..228371622927502.203181-CDS-E-siliculosus-1a_F_contig10:22706..22837Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 22707..22837 +
1696318554.0780728-CDS-E-siliculosus-1a_F_contig10:22706..228371696318554.0780728-CDS-E-siliculosus-1a_F_contig10:22706..22837Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 22707..22837 +
1622927502.2185543-CDS-E-siliculosus-1a_F_contig10:23185..233801622927502.2185543-CDS-E-siliculosus-1a_F_contig10:23185..23380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 23186..23380 +
1696318554.087087-CDS-E-siliculosus-1a_F_contig10:23185..233801696318554.087087-CDS-E-siliculosus-1a_F_contig10:23185..23380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 23186..23380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10.36.1

>prot_E-siliculosus-1a_F_contig10.36.1 ID=prot_E-siliculosus-1a_F_contig10.36.1|Name=mRNA_E-siliculosus-1a_F_contig10.36.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=251bp
MFRIFDPYAMALSLLVGGVGFCTTFYFNTEMSEWGKDEIAYPMMAMIYVY
ARNARFFESDEESSAKILEGHGSGGAVAEGEDGKFQAPSPVGVPGLVTVK
GPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVT
QEGEEELRYFVETYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIV
RGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMDDDEAREDTVEGEGVRT
*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig10:20297..24537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10.36.1 ID=mRNA_E-siliculosus-1a_F_contig10.36.1|Name=mRNA_E-siliculosus-1a_F_contig10.36.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4241bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:20297..24537+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGGCAACGTACCAGACTCCTCGCAACCAAGAAAGGAGCTACCATGTTTC
GAATCTTTGACCCATATGCGATGGCCCTGTCCTTACTCGTGGGTGGTGTG
GGGTTCTGCACGACTTTCTACTTCAACACAGAGATGTCCGAGTGGGGAAA
GGACGAGATCGCGTATCCCATGATGGCCATGGTGAGCTCTAAGATGTTTT
ACCAGGCGCTGCTGTCAATGCATAGTTGAACACACCACATGGACTCTTTT
TACACCAACAGCCGCGCACGAAACGAAGACGCAAGGTCCGTGGTGCTATC
TCTGCTGTCGAAAGCCGGCCTCCCGCAAAGTCCCCTTCATGTTGCACTTC
CACTCCCGCTTCGCAATAACGGAATAACGGGTGCAAGCGGAGACATCAAT
ACTCCGCTGTTCCCCGGAACTGCCGTAAGCAGACGCGCGCCCGTGTGCGG
TCTCCCCCTGTCTTTCGCACGAGGGTACGAGGTTAGCACGAGCCTCATCT
GAACAGCATCGGCAGAAGAGAAAGATTACGCTGCGTTTTCATCAGAATGC
CTGTCGTGTGGATCTAAGCACTTCGTGTACTTGAGCACTTGAGCATACAT
TGTAATCCTCGCGAATCTCAGAAAAGTTTGGAACCTGGGTTCTCGCCGAC
ACTGCACGTCCGTTCCTTGGTGCGATCTGTTCTCTACCAGAACCTACGGC
AGTAGCCTTGAGCCGGCGACAGGGTTGTTGTGCCATCCTTTCGGCAACGC
ATTTTGATCGAATTCCCCACGAGAAAACCAAAATGCTACTGCATCGTAAG
TCGAAGTAACGCGACTCTGTATTTAATGCTGGCTCTATTTTGCCTCGGGG
TGACAGCAGTGTAGACTAGTGTACTGGTCTAGTCTACCGAATACCGCCGT
ATGTACGTATGTACGGAAGAATATCTCGGTGGTGAGGAGAGCTGTAGTAA
CGTCTTGAAACGGTGCAGTTTGAACCCACTTGGAATTATGAACGAATAAG
CTGTAGGCATCCGGCATGACGAAGCGTGCGTATCCATCACCAGGGTGGAA
GTACGATGCGTTTCGGTTCGCTTCCCAAGGCAAGCTTCTCCTATATCTTC
AGCTTGCTCAGACAGGCGTTCTGCGGCAAACTACAACGCCCAAGTGGATA
CGATGGCTTTCAACAACGAGCTGCTGCCTCGAATGTATCTACACGTGTAG
TGCCACTCGACGAAAAAAGCGCTCGAATGATGTAGCTGGTGGACCCTGAC
GTGTTTGTATCACGCACGTCGTCCCCGCAATCGTAGGTACGTTCTTCCAT
CCATTGTGGACCCTTTCTAGCCCGAAACAAAATCGCCCCCTCCTCGTCCC
CCTTCGCCAACTTCTCGTGCACCAGATATACGTTTACGCTCGAAACGCCC
GGTTCTTCGAAAGCGACGAAGAATCTTCCGCGAAAATTCTCGAAGGCCAC
GGCAGCGGCGGGGCTGTCGCGGAGGGGGAGGACGGGAAATTCCAGGCGCC
TTCCCCGGTGGGCGTTCCAGGGCTGGTCACAGTGAAGGGGCCCCCGCTGG
CGGCGCCAAAGGCAGGGTCGCTGGCGGTCGTTTTCTTCTTCGCTACCTGG
TGTGACAGCTGCGAGCAGGTCTTGCCGGCCTTCCTTGCCGTGGCGGCGAG
GTATATCGACGAAGGTGAAGTGGGAGGCAGGGTAGTGAACGGGACCGAGT
GAAGGCGAATATTGTGTTGGCACAGCCATACCGCCCGCCTGAAGCGGGTA
CCATAAACTGCGTCCTACAGCGCGTTCTCGCACACTGAACGCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCC
CCCCCGCGCCGCCTTCCCCCTCTCCTCCCCTCCCTCCTCTCCTCCGGGTA
TCTCTCCGCCGTCATGCCGNNNNNNNNNNAAATGTTGGGTGGGCCCCCCC
AACCCCCCCCCCGAACGGGGGCTCCACAACCCCGCCCCCCCCCCCGTCCC
CCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCTGCAAGTTCGCAACC
AAGCGGGTTGGGTTAAGCAAGGGTGTAAGGTGTGGCGAAGAACATGAATC
GCTGCTGAGTTCGTTAGAGACTTTCTCGCATCTAAGGGAAGCAGTAGCGT
TCATGCGTTTCTAGGATTTTGTAGACCCACACTTGCACTGGGTTCGCTAA
GGGAATGTTAAGCTGAGCGGGTCTGGGGAACAACAGATACGCTCCCACTA
ACGGTTGCCCTTGATGGAAATTGACATCTTGGCACTCCGACGCTTTTATT
TTTCCTACGCTCTGTTGTGTCTTCTTGTTCGTCCTAACCACGGCAAAGGG
TGTTGCAAGATCTACGACAGCATGTACCGTGACCGCAGCCCTATCATTTT
TTCTTGTCAGGGATATCCTTCGCGGGAGTAACTCAGGAAGGGGAGGAGGA
GCTCCGATACTTTGTTGAAACGTACCAGCGCTCACTGCGACCTGTCACCC
TCCTCGCGGACGAGCAAGGCGTGCTTACAGCGGGCTACCAGGTTTGCGCG
TTTTTTTCGAGTTCTTGCTTTTCTTGCTGTTCTTGTCTTTTCTTTGGCCG
CATCGTACAATTCGTTTGTTCGGGCCTGATCTCGCAAGTCAGCGACGGCG
AAATTACAGCTTTGAAAGCGCCCGACATTGGCTGTGCCAAACACACCCCG
GAGGAGCATTGTAACGCTTTTTTTTATTGGCTCCCGACACGATCGGTCAA
ACTCCCCGTGGACGACTTGACGCTACGTATGTTGTCGTTGTGGTAGATGT
GGCCTCTGGCAAGCGTGCTCGACTGTGCGATTCCTCAAAACTTCGACTTG
AAACCCTTGCAAATTTCGTTTTTGCACTACGTCCACCAGGGACAGCACCG
CGCCAAGACTATTCCCCATTGCTACATCGTAAGGGGCGGGAGCGGGGACA
CCGGTGCAGGAGCTGGGTTTGGGGTGGTGGAGTGGCACGGGCATCCAGCA
CGGTTGGAAGCGGCCCTGGGCTATCTTATGGACGATGATGAGGCGAGAGA
GGACACCGTGGAGGGGGAAGGGGTTCGGACATAGCAGCTGGAGTAAGTAC
GTTGTCATTGTTTCGGCAAGAACAATGAAACAGATGAGACCAGCAAAGTT
TGTACCTTGTTGGGAACAGGCTGTTTGAGCGAAAGGGAATGCCCATTGTG
GTTTACGCGCCTAGGTGACGAAGAAATACAAACAACGGTCGTGTCTCGTT
CAGAACCAGACATCGGTTCAGCGTTTAGACTGTTTTTTGATGTCGAAAGT
TGCTTGGTAAATGAGGACGGACTGAAGGAGGAGAATGCATGAGGGAGATG
AAAGGGGAGTACGTTTTACGCAGAATATATCGGGGCGGAGAAGATTCCCT
ATGGAGTCATCCGGCCTGCCCCTCACTTATAAACTTTACACGAGACGCAG
ATGCTTTGGCGTTTTTTTTCGCAGGCATTCACCACTGCAGGAGAGCGCGC
GGACCCTTTATTCTTGATTTTTGACGCTGTAACGCTGTGCGGTGAAGAAG
TGGAGGTTGGAGATCGTCCATGGTGACGGCGATTTGAAATGGAAATATCT
AGTTGGAGAACGGCGTAGGCAACCCGGTTGCGCAAGGTGCCTGTAGTTTC
TCATTGGTCGTTAATTTTGAAAGGACGTTTGGCCGTGAAGGATGCTTGGT
GGCGGCATCCATTCGGGGACTGCCGATCGTTTTTCTCTCCAGAACTGACC
ACTGATCGGTGGACTTGTCGATCGAACAAAGGGACGATTCTGTGGAAAAA
GAAATTGAGCGTATCGGGCCGGCTACTAGGGGGCTAGTAGCGAGACCCTT
GTCGATTCCATGCCACGGCAAGGTTGTTCTGGTCCCATGGAACCGTGGTC
GATCTATCGGCACGGTGGTCGTGCCGTGGGCCGTGCTTGCCGCCCTTGGC
ACTATTGTAAAAAATAATGATACGTTTTTTGGCCAAACAAATGGCGTCCA
GGGTGTGGGTGGGCTGTGCAGCAAGCAGTGTGGGTCTTGAGAATCGTCGG
AGATGACGTGTGTGCCATCCTATCTAACCATGACGTTGCAACCTCACGGT
TCGGTTTACGTGGACGCACCCACAGAGTTCACTCAGGGCGACAGCTACCC
AGAAGTGTATGTTTTGCTACCCTCTGGGACAACGCTTGCCTGTGGTTTAT
AGCTTTCCTTTTGTTCCCCCCCCGGTCGGACTCAGTCGTTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:20297..24537+

>mRNA_E-siliculosus-1a_F_contig10.36.1 ID=mRNA_E-siliculosus-1a_F_contig10.36.1|Name=mRNA_E-siliculosus-1a_F_contig10.36.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:20297..24537+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTCGAATCTTTGACCCATATGCGATGGCCCTGTCCTTACTCGTGGG
TGGTGTGGGGTTCTGCACGACTTTCTACTTCAACACAGAGATGTCCGAGT
GGGGAAAGGACGAGATCGCGTATCCCATGATGGCCATGATGTTTCGAATC
TTTGACCCATATGCGATGGCCCTGTCCTTACTCGTGGGTGGTGTGGGGTT
CTGCACGACTTTCTACTTCAACACAGAGATGTCCGAGTGGGGAAAGGACG
AGATCGCGTATCCCATGATGGCCATGATATACGTTTACGCTCGAAACGCC
CGGTTCTTCGAAAGCGACGAAGAATCTTCCGCGAAAATTCTCGAAGGCCA
CGGCAGCGGCGGGGCTGTCGCGGAGGGGGAGGACGGGAAATTCCAGGCGC
CTTCCCCGGTGGGCGTTCCAGGGCTGGTCACAGTGAAGGGGCCCCCGCTG
GCGGCGCCAAAGGCAGGGTCGCTGGCGGTCGTTTTCTTCTTCGCTACCTG
GTGTGACAGCTGCGAGCAGGTCTTGCCGGCCTTCCTTGCCGTGGCGGCGA
GGTATATCGACGAAGATATACGTTTACGCTCGAAACGCCCGGTTCTTCGA
AAGCGACGAAGAATCTTCCGCGAAAATTCTCGAAGGCCACGGCAGCGGCG
GGGCTGTCGCGGAGGGGGAGGACGGGAAATTCCAGGCGCCTTCCCCGGTG
GGCGTTCCAGGGCTGGTCACAGTGAAGGGGCCCCCGCTGGCGGCGCCAAA
GGCAGGGTCGCTGGCGGTCGTTTTCTTCTTCGCTACCTGGTGTGACAGCT
GCGAGCAGGTCTTGCCGGCCTTCCTTGCCGTGGCGGCGAGGTATATCGAC
GAAGGGATATCCTTCGCGGGAGTAACTCAGGAAGGGGAGGAGGAGCTCCG
ATACTTTGTTGAAACGTACCAGCGCTCACTGCGACCTGTCACCCTCCTCG
CGGACGAGCAAGGCGTGCTTACAGCGGGCTACCAGGGATATCCTTCGCGG
GAGTAACTCAGGAAGGGGAGGAGGAGCTCCGATACTTTGTTGAAACGTAC
CAGCGCTCACTGCGACCTGTCACCCTCCTCGCGGACGAGCAAGGCGTGCT
TACAGCGGGCTACCAGGGACAGCACCGCGCCAAGACTATTCCCCATTGCT
ACATCGTAAGGGGCGGGAGCGGGGACACCGGTGCAGGAGCTGGGTTTGGG
GTGGTGGAGTGGCACGGGCATCCAGCACGGTTGGAAGCGGCCCTGGGCTA
TCTTATGGACGATGATGAGGCGAGAGAGGACACCGTGGAGGGGGAAGGGG
TTCGGACATAGGGACAGCACCGCGCCAAGACTATTCCCCATTGCTACATC
GTAAGGGGCGGGAGCGGGGACACCGGTGCAGGAGCTGGGTTTGGGGTGGT
GGAGTGGCACGGGCATCCAGCACGGTTGGAAGCGGCCCTGGGCTATCTTA
TGGACGATGATGAGGCGAGAGAGGACACCGTGGAGGGGGAAGGGGTTCGG
ACATAG
back to top