mRNA_E-siliculosus-1a_F_contig105.361.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: D8LSE3_ECTSI (DSBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE3_ECTSI) HSP 1 Score: 535 bits (1379), Expect = 1.240e-191 Identity = 277/289 (95.85%), Postives = 278/289 (96.19%), Query Frame = 1 Query: 1 MGLWCALHILCCICFLLNECVGLVLFPCRATLRLDMSAAASSSVSDADSVHVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVLRDDHMAKTELGVTGVPCFIVRGTGGRESGSGTSDDAVGGGSVGGAGQSGTVLNGAVAPDKLLRAFESVRRLG 867
MGLWCALHIL CI FLLNECVGLVLFPCRATLRLDMSAAASSSV DADSV VQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYL YNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQ VNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGE DVL+DDH AKTELGVTGVPCFIVRGTGGRESGSGT DDAVGGGSVGGAGQS VLNGAVAPDKLLRAFESVRRLG
Sbjct: 1 MGLWCALHILLCIGFLLNECVGLVLFPCRATLRLDMSAAASSSVRDADSVRVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLVYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQ-VNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEEDVLQDDHTAKTELGVTGVPCFIVRGTGGRESGSGTPDDAVGGGSVGGAGQSEIVLNGAVAPDKLLRAFESVRRLG 288
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: A0A7S3XRH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRH4_HETAK) HSP 1 Score: 192 bits (488), Expect = 4.190e-57 Identity = 108/249 (43.37%), Postives = 142/249 (57.03%), Query Frame = 1 Query: 124 SSVSDADSVHVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFA-----DSAGKGDQQ--VNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVLRD-DHMAKTELGVTGVPCFIVRGTGGRESGSGTSDDAVGGGSVGGAGQSGTVLNGAVAPDKLLRAF 846
+S S A ++ + V+SDFACPWCYVGKAR+ AAI R + D A V+V + PY ID TQP GEEYL+YN+RRWGGDGWT SL+R+ ++ G FA W TWPN+L AHRL + D G D Q + +F+ IYE GGNAS +E L+ +A G+ + + +G ++ D AKTEL V+GVP FI++ G E GSG T L+GA D+ L AF
Sbjct: 2 ASFSSAKALKIDVISDFACPWCYVGKARMEAAIAQL-RENNED----ASVEVRWHPYQIDAATQPDGEEYLSYNRRRWGGDGWTHSLRRAGRQSGLGFASWATWPNTLHAHRLMQLVQDLEDDGQGSSDLQGKIKDGIFKCIYEEGGNASTIEQLIQIATSCGMDAEVVRTAMETDDGLTSSVKQRDRYAKTELDVSGVPFFIIQKGGNEEGGSGGRQ---------------TALSGAAGTDEFLSAF 230
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: A0A388LLX2_CHABU (DSBA domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLX2_CHABU) HSP 1 Score: 177 bits (450), Expect = 1.410e-51 Identity = 91/188 (48.40%), Postives = 120/188 (63.83%), Query Frame = 1 Query: 148 VHVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVLRDDHMAKTELGVTGVPCFIV 711
VHV V SD ACPWCYVGKARL +AI + E G+G+A+V V + YMID RT+ GEEYLAYN+RRWG DGWT SL+ S+++DG F W+ WPN+L AHRL A+ G+G + + L FQ YE GGN S ++ + S+A + GL + L E +V+ +D AK +L + VP FIV
Sbjct: 14 VHVDVWSDIACPWCYVGKARLDSAISSLE------GEGKAKVDVRWHAYMIDSRTKSNGEEYLAYNRRRWGSDGWTHSLRSSARRDGLAFGDWKWWPNTLHAHRLVHLAEKVGRGSEAKDRL-FQKTYEEGGNVSLVDVVCSIADDMGLEGGRQA--LERGEAMAEVIAEDRRAKEKLNIHSVPHFIV 192
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: A0A8J9S664_9CHLO (Uncharacterized protein YwbO n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S664_9CHLO) HSP 1 Score: 175 bits (443), Expect = 1.290e-50 Identity = 90/194 (46.39%), Postives = 119/194 (61.34%), Query Frame = 1 Query: 130 VSDADSVHVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVLRDDHMAKTELGVTGVPCFIV 711
+S ++ + + SD ACPWCYVGK RL AI+ +GRA +V++ PY+ID T GE+YLAYNKRRWG D WT SL+RS DG F W+ WP++L AHRL A+ G+ + L+FQ IYERG N SD TL +L E GL+ E YL S EG+ +VL++D AK LG+ VP F++
Sbjct: 1 MSTCPTIVIDIWSDLACPWCYVGKRRLDKAIDQC--------RGRADFKVNWHPYIIDHGTNRAGEDYLAYNKRRWGSDSWTQSLRRSGLPDGATFKDWKWWPHTLKAHRLVLLAEKKGRA-AEAEELLFQAIYERGQNVSDATTLTALGQEVGLTGVEE--YLESAEGQEEVLQEDARAKQVLGIQSVPYFLI 183
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: E1ZIP9_CHLVA (DSBA domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIP9_CHLVA) HSP 1 Score: 174 bits (441), Expect = 3.380e-50 Identity = 92/199 (46.23%), Postives = 116/199 (58.29%), Query Frame = 1 Query: 148 VHVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVLRDDHMAKTELGVTGVPCFIVR--GTGGRESG 738
V V V SD +CPWC+VGK R+ A+ E+ +V + Y+ID +T PGGE+YLAYN+RRWGGDGWT L+RS DG FA W WP+SL H+L A GKG ++ L+ + YE+G N SD+ TLV E GL E +L+ G VLRDD K ELG++GVP FIV G GG E G
Sbjct: 7 VRVDVWSDISCPWCWVGKKRMDQALAQLEQVD---------FEVVYHAYVIDHKTDPGGEQYLAYNRRRWGGDGWTGDLRRSGSPDGATFADWVWWPSSLKGHQLLLLAQEQGKG-REAKDLLLRYTYEQGENVSDIGTLVRAGRELGLDEGEVRRHLAEDRGRAAVLRDDETGKRELGISGVPYFIVGPGGGGGGEPG 195
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: A0A1Y1IQU1_KLENI (DSBA domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQU1_KLENI) HSP 1 Score: 169 bits (429), Expect = 1.950e-48 Identity = 91/199 (45.73%), Postives = 120/199 (60.30%), Query Frame = 1 Query: 118 ASSSVSDADSVHVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVLRDDHMAKTELGVTGVPCFIVR 714
A++SV++A VH+ SD ACPWCYVGKARL AI E S GK +V+V++ PYMID T P GE+YLAYNKRRWG GWT SL+ S ++G F W WPN+L AHRL A S GKG + ++F+ YE G N S L+ L+ E L E YL S +G +V + D AK+ + + VP F+++
Sbjct: 2 AAASVANAVKVHIDAWSDIACPWCYVGKARLDQAIRNVEMRSA--GKP-LKVEVAWHPYMIDLGTNPAGEDYLAYNKRRWGSGGWTQSLRGSGARNGLKFKDWNHWPNTLHAHRLVDLASSVGKGPE-AEDVLFRRTYELGQNVSSLDVLIEAGQELDLPGVEE--YLRSDQGLAEVKQQDRDAKSRMQIRSVPYFVLQ 194
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: A0A176WK32_MARPO (DSBA domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WK32_MARPO) HSP 1 Score: 169 bits (428), Expect = 2.670e-48 Identity = 89/188 (47.34%), Postives = 114/188 (60.64%), Query Frame = 1 Query: 148 VHVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVLRDDHMAKTELGVTGVPCFIV 711
V++ SD +CPWCYVGK RL AI + + + R+ V + PYMID +T+P GEEYLAYNKRRWG D WT L+RS K+G F W WPN+L AHRL A++ G+G L+ +T YE G N S L+ L+S+A E GL AE YL S +G DVL D AK+ LG+ VP F +
Sbjct: 11 VNIDAWSDISCPWCYVGKTRLDQAILNIQAKTQTP-----RIVVKWHPYMIDKKTRPEGEEYLAYNKRRWGSDSWTQDLRRSGAKNGLKFGNWRWWPNTLNAHRLILLAETYGRGPDAKQLLLLKT-YEEGANVSKLDVLISVANELGLPGAEE--YLKSDQGTEDVLAMDSRAKSALGIHSVPHFRI 190
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: UPI0009E6346F (uncharacterized protein LOC110051917 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E6346F) HSP 1 Score: 168 bits (426), Expect = 4.190e-48 Identity = 84/190 (44.21%), Postives = 117/190 (61.58%), Query Frame = 1 Query: 148 VHVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFA--DSAGKGDQQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVLRDDHMAKTELGVTGVPCFIV 711
+++ V SD +CPWCYVGKARL AI+ F +S + V++ PY+ID T P GE+Y+AYN RRWGGDGWT SL+++ ++DG +F W+TWPNSL HRL A +G + L+F IYE G N SD++TL+ A E GL + YL S VL +D AK+ + ++GVP F++
Sbjct: 2 INIDVYSDLSCPWCYVGKARLDKAIQKFTDAS---------ITVNWHPYIIDKNTAPLGEDYMAYNTRRWGGDGWTRSLRQAGQQDGLEFKNWKTWPNSLHGHRLIHLAGIQKGPEGQAKAKDLLFHMIYEDGKNVSDVDTLIEAAKELGLEGGKN--YLKSSHDVDLVLSEDSRAKSHMKISGVPYFVI 180
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: UPI000A2A9E70 (uncharacterized protein LOC110250627 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9E70) HSP 1 Score: 166 bits (419), Expect = 5.300e-47 Identity = 88/199 (44.22%), Postives = 121/199 (60.80%), Query Frame = 1 Query: 154 VQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAG--KGDQQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVLRDDHMAKTELGVTGVPCFIVRGTGGRESGSG 744
+ V SD ACPWCYVGK +L AI+ F TSD + V++ PY+ID T GEEY+ YN+RRWG DGWT SL+ + K+ G +F W+TWPN++ AHRL A KG ++F+ IYE G N SD+ L A E GL + YL+S +G +V+ +D AKT+L ++GVP FI++ G++S SG
Sbjct: 6 IDVHSDLACPWCYVGKRQLDLAIQQF----TSDNPN-VNITVNWHPYIIDKNTAQNGEEYMTYNRRRWGSDGWTNSLRNAGKRIGLEFRNWKTWPNTVNAHRLVHLAGQKNGPKGQNMAKDVLFRMIYEDGKNISDVHILAEAAHELGLD--DVVGYLNSGQGFDEVMAEDSHAKTKLRISGVPFFILQSKKGQKSLSG 197
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Match: UPI001CF5FBC5 (uncharacterized protein YwbO-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF5FBC5) HSP 1 Score: 162 bits (409), Expect = 1.570e-45 Identity = 84/191 (43.98%), Postives = 119/191 (62.30%), Query Frame = 1 Query: 148 VHVQVVSDFACPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLAYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFA--DSAGKGDQQVNSLVFQTIYERGGNASDLETLVSLAAEAGLSPAEASAYLSSREGEVDVL-RDDHMAKTELGVTGVPCFIV 711
+++ V SD +CPWCYVGK RL AI+ F+ +S + VS+ PY+ID +T GEEY+AYN RRWG DGWT SL+R ++ G +F W+ WPNSL HRL A G + ++F+ IYE G N SD+ TL+ A E L AE YL+S + +VD++ +D AK+E+G++GVP F++
Sbjct: 3 INIDVYSDLSCPWCYVGKRRLDKAIQQFKTTS---------ISVSWHPYIIDRKTASNGEEYMAYNTRRWGSDGWTHSLRREGQRLGLEFKNWKIWPNSLHGHRLVHLAGKQKGPHGQGKAKDVLFRMIYEDGMNISDVGTLIQAAKEISLQGAEE--YLNSTD-DVDLIWSEDLRAKSEMGISGVPYFVI 181 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig105.361.1 >prot_E-siliculosus-1a_F_contig105.361.1 ID=prot_E-siliculosus-1a_F_contig105.361.1|Name=mRNA_E-siliculosus-1a_F_contig105.361.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=290bp MGLWCALHILCCICFLLNECVGLVLFPCRATLRLDMSAAASSSVSDADSVback to top mRNA from alignment at E-siliculosus-1a_F_contig105:79377..83033- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig105.361.1 ID=mRNA_E-siliculosus-1a_F_contig105.361.1|Name=mRNA_E-siliculosus-1a_F_contig105.361.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3657bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:79377..83033- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:79377..83033- >mRNA_E-siliculosus-1a_F_contig105.361.1 ID=mRNA_E-siliculosus-1a_F_contig105.361.1|Name=mRNA_E-siliculosus-1a_F_contig105.361.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1740bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:79377..83033- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |