mRNA_E-siliculosus-1a_M_contig99.17751.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17751.1 vs. uniprot
Match: D7FI22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI22_ECTSI) HSP 1 Score: 676 bits (1743), Expect = 1.590e-225 Identity = 453/620 (73.06%), Postives = 470/620 (75.81%), Query Frame = 1
Query: 1063 KGPAALRLDWKDLIYGDTGEGEDDVGGPESPEDPNDSLHAGISLADLEKIHVDLTALRDKAALSIPRSTTSRGRVAKVRIDAILHALESWWWSEEAGRGRRSVFRGGFGDCAGASSTLSASMTLXXXXXXXFSSLTPEEVEAVIVYVDKDQSGEVDAREFQAAISAAKQGKIPDQGLAGCIRRINDMLRLHNLRIRDVFHVMDSDGSGKLSHRELAQGLSLLYEHDRDKVIERRQALRRRKQQQKSKEDGKRAKVAAFLTSMDSLQEESLRERDFFATEVTDEKLFQDLVRRISNETGYETDDXXXXXXXTDETDEYNXXXXXXXXXXX------CEGVFDRHRAEKTKDSNRTRXXSITRSRAGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDDGRDKHGQGHPRTACDHGSPGDNGGADEWRWEGGEKEPKXXXXXXXXXXXHEKIIRPIFAFRAQDATLDQLRHDVSARRKAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEFLGTLDQPVALREEEDDVGVVGVGVDGVVGGDGEAEAPSAXXXXXXGARVLAGHVDDDDEAGGSAEGNRTYLSDATGFEDSSRGPAAASSSSLGEADAV 2904
KGPAA LDWK LIYGD GEG+DDVGGPESPE PNDSLHAGI LADLEKIHV+LTALR+KA LSIPRST SRGRVAKVRIDAILHALES WWSEEAGRG +FRG FGDCAGASSTLSASMTL SSLT EEVEAVIVYVDKDQSGEVDAR+FQAAISAAKQGKIPDQGLAG IRRINDMLRLHNLRIRDVFHVMDSDGSGKLSHRELAQGLSLLYEHDRDKVIERRQALRRRK+QQKSKEDGKRAKVAAFLTSM SLQEESLRER+FFATEVTDE LFQD+V+RISNETGYETDD ETD XXXXXXXXXXX CEG FD SPGDNGGADEWRWE G+K PK XXXXXXXXXXHE+++RP+ AFRAQD TLDQLRHDVSARRKAAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E LGTLDQPVA EEED VGVVGV VDGVVGGDGEA+ PS G RVLAGHVDDDDEAGGSAEG+RTY SDATGFE+ S GPAA SSSSLGEADAV
Sbjct: 75 KGPAAPLLDWKGLIYGDGGEGDDDVGGPESPEGPNDSLHAGIGLADLEKIHVELTALREKAELSIPRSTISRGRVAKVRIDAILHALESGWWSEEAGRGSMRIFRGSFGDCAGASSTLSASMTLSSSSSS-LSSLTLEEVEAVIVYVDKDQSGEVDARDFQAAISAAKQGKIPDQGLAGSIRRINDMLRLHNLRIRDVFHVMDSDGSGKLSHRELAQGLSLLYEHDRDKVIERRQALRRRKEQQKSKEDGKRAKVAAFLTSMGSLQEESLREREFFATEVTDEDLFQDIVQRISNETGYETDDY--------ETDXXXXXXXXXXXXXXXXXXXXCEGSFD--------------------------------------------------------------------------------SPGDNGGADEWRWEEGKKGPKKXXXXXXXXXXHEQMMRPVIAFRAQDVTLDQLRHDVSARRKAAAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLGTLDQPVAFGEEEDHVGVVGVDVDGVVGGDGEAKVPSVAAEGGAGPRVLAGHVDDDDEAGGSAEGSRTYPSDATGFENYSGGPAAPSSSSLGEADAV 605
BLAST of mRNA_E-siliculosus-1a_M_contig99.17751.1 vs. uniprot
Match: A0A6H5JFH1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH1_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 4.530e-20 Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 1
Query: 1591 LAGCIRRINDMLRLHNLRIRDVFHVM------DSDGSGKLSHRELAQGLSLLYEHDR 1743
+AGCIRRINDMLRLHNLRIRDVFHVM DSDGSGKLSHREL QGLS LYEHDR
Sbjct: 1 MAGCIRRINDMLRLHNLRIRDVFHVMVRGRMPDSDGSGKLSHRELTQGLSQLYEHDR 57 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17751.1 >prot_E-siliculosus-1a_M_contig99.17751.1 ID=prot_E-siliculosus-1a_M_contig99.17751.1|Name=mRNA_E-siliculosus-1a_M_contig99.17751.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1290bp MRPSNSGDDDKDANTTPAAADVSAATVSYRDCCLSLSHLYHRLNIWPLQDback to top mRNA from alignment at E-siliculosus-1a_M_contig99:101614..110738+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17751.1 ID=mRNA_E-siliculosus-1a_M_contig99.17751.1|Name=mRNA_E-siliculosus-1a_M_contig99.17751.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9125bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:101614..110738+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:101614..110738+ >mRNA_E-siliculosus-1a_M_contig99.17751.1 ID=mRNA_E-siliculosus-1a_M_contig99.17751.1|Name=mRNA_E-siliculosus-1a_M_contig99.17751.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7740bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:101614..110738+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |