mRNA_E-siliculosus-1a_M_contig99.17748.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig99.17748.1
Unique NamemRNA_E-siliculosus-1a_M_contig99.17748.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig99contigE-siliculosus-1a_M_contig99:81583..82464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size882
Model size883
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936569.4606962-CDS-E-siliculosus-1a_M_contig99:81582..824641622936569.4606962-CDS-E-siliculosus-1a_M_contig99:81582..82464Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 81583..82464 +
1696251135.6611772-CDS-E-siliculosus-1a_M_contig99:81582..824641696251135.6611772-CDS-E-siliculosus-1a_M_contig99:81582..82464Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 81583..82464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig99.17748.1prot_E-siliculosus-1a_M_contig99.17748.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig99 81583..82464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig99.17748.1

>prot_E-siliculosus-1a_M_contig99.17748.1 ID=prot_E-siliculosus-1a_M_contig99.17748.1|Name=mRNA_E-siliculosus-1a_M_contig99.17748.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=294bp
NAGGKTNTCHPCTPHMNEWPREKNMSHPLFFFPVSNRLVTGTTRTPTTTT
ITTTTTALAVRLPNLAGPTWGVLTESPHHREIKPTSMEDDTRKKRSWAIC
ASMGGHRWGEPFRLACPPSRERRAWGSAESVPAAGGPRCSRQDFPGTSEY
HLNSTSIVPPLNHVGHIHTTIPAAAAAAAAATWEIQQRALEATPRTAPEI
PPPSPLLQECHFPSRFFPPHGAFVWYNFFYYVVRRPGRMDHCPPMCTRTR
PPPLPSTSSMPFVWFISKTEELETRHGYVLANISAPVYAHADRH
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mRNA from alignment at E-siliculosus-1a_M_contig99:81583..82464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig99.17748.1 ID=mRNA_E-siliculosus-1a_M_contig99.17748.1|Name=mRNA_E-siliculosus-1a_M_contig99.17748.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=882bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:81583..82464+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AACGCGGGCGGAAAGACAAACACCTGCCATCCATGCACACCGCACATGAA
CGAATGGCCTAGAGAGAAAAATATGTCACACCCGTTATTTTTCTTCCCAG
TGTCGAACCGCCTTGTCACTGGAACAACACGAACACCTACCACCACCACC
ATCACCACCACCACCACCGCCCTCGCCGTTCGTCTCCCGAATCTAGCTGG
TCCCACGTGGGGCGTTCTTACCGAATCACCGCATCATCGGGAAATCAAGC
CAACATCTATGGAAGATGACACGCGTAAAAAGCGTAGCTGGGCTATTTGC
GCTTCCATGGGCGGACATCGTTGGGGGGAACCATTTCGTCTGGCGTGTCC
GCCATCTCGAGAAAGACGCGCATGGGGTTCGGCCGAGAGTGTGCCAGCAG
CTGGTGGCCCCCGTTGTTCTCGCCAAGACTTCCCCGGCACATCGGAATAC
CATCTCAATTCCACTTCTATCGTCCCACCCCTTAATCACGTTGGGCACAT
CCACACCACCATTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACATGGG
AGATCCAGCAGAGAGCACTAGAAGCCACACCGAGGACTGCACCGGAGATC
CCGCCACCTTCACCACTATTACAGGAGTGCCACTTTCCGTCACGTTTTTT
CCCTCCGCACGGGGCTTTCGTCTGGTACAATTTTTTTTATTATGTTGTGC
GCCGACCAGGAAGGATGGATCACTGTCCACCGATGTGCACGCGCACGCGC
CCCCCGCCCCTACCTTCCACATCCTCAATGCCCTTCGTTTGGTTTATATC
GAAGACAGAAGAACTCGAAACTCGTCACGGCTACGTTCTTGCGAATATCT
CCGCGCCGGTGTATGCACACGCCGATCGTCAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:81583..82464+

>mRNA_E-siliculosus-1a_M_contig99.17748.1 ID=mRNA_E-siliculosus-1a_M_contig99.17748.1|Name=mRNA_E-siliculosus-1a_M_contig99.17748.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1764bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:81583..82464+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AACGCGGGCGGAAAGACAAACACCTGCCATCCATGCACACCGCACATGAA
CGAATGGCCTAGAGAGAAAAATATGTCACACCCGTTATTTTTCTTCCCAG
TGTCGAACCGCCTTGTCACTGGAACAACACGAACACCTACCACCACCACC
ATCACCACCACCACCACCGCCCTCGCCGTTCGTCTCCCGAATCTAGCTGG
TCCCACGTGGGGCGTTCTTACCGAATCACCGCATCATCGGGAAATCAAGC
CAACATCTATGGAAGATGACACGCGTAAAAAGCGTAGCTGGGCTATTTGC
GCTTCCATGGGCGGACATCGTTGGGGGGAACCATTTCGTCTGGCGTGTCC
GCCATCTCGAGAAAGACGCGCATGGGGTTCGGCCGAGAGTGTGCCAGCAG
CTGGTGGCCCCCGTTGTTCTCGCCAAGACTTCCCCGGCACATCGGAATAC
CATCTCAATTCCACTTCTATCGTCCCACCCCTTAATCACGTTGGGCACAT
CCACACCACCATTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACATGGG
AGATCCAGCAGAGAGCACTAGAAGCCACACCGAGGACTGCACCGGAGATC
CCGCCACCTTCACCACTATTACAGGAGTGCCACTTTCCGTCACGTTTTTT
CCCTCCGCACGGGGCTTTCGTCTGGTACAATTTTTTTTATTATGTTGTGC
GCCGACCAGGAAGGATGGATCACTGTCCACCGATGTGCACGCGCACGCGC
CCCCCGCCCCTACCTTCCACATCCTCAATGCCCTTCGTTTGGTTTATATC
GAAGACAGAAGAACTCGAAACTCGTCACGGCTACGTTCTTGCGAATATCT
CCGCGCCGGTGTATGCACACGCCGATCGTCATAACGCGGGCGGAAAGACA
AACACCTGCCATCCATGCACACCGCACATGAACGAATGGCCTAGAGAGAA
AAATATGTCACACCCGTTATTTTTCTTCCCAGTGTCGAACCGCCTTGTCA
CTGGAACAACACGAACACCTACCACCACCACCATCACCACCACCACCACC
GCCCTCGCCGTTCGTCTCCCGAATCTAGCTGGTCCCACGTGGGGCGTTCT
TACCGAATCACCGCATCATCGGGAAATCAAGCCAACATCTATGGAAGATG
ACACGCGTAAAAAGCGTAGCTGGGCTATTTGCGCTTCCATGGGCGGACAT
CGTTGGGGGGAACCATTTCGTCTGGCGTGTCCGCCATCTCGAGAAAGACG
CGCATGGGGTTCGGCCGAGAGTGTGCCAGCAGCTGGTGGCCCCCGTTGTT
CTCGCCAAGACTTCCCCGGCACATCGGAATACCATCTCAATTCCACTTCT
ATCGTCCCACCCCTTAATCACGTTGGGCACATCCACACCACCATTCCAGC
AGCAGCAGCAGCAGCAGCAGCAGCCACATGGGAGATCCAGCAGAGAGCAC
TAGAAGCCACACCGAGGACTGCACCGGAGATCCCGCCACCTTCACCACTA
TTACAGGAGTGCCACTTTCCGTCACGTTTTTTCCCTCCGCACGGGGCTTT
CGTCTGGTACAATTTTTTTTATTATGTTGTGCGCCGACCAGGAAGGATGG
ATCACTGTCCACCGATGTGCACGCGCACGCGCCCCCCGCCCCTACCTTCC
ACATCCTCAATGCCCTTCGTTTGGTTTATATCGAAGACAGAAGAACTCGA
AACTCGTCACGGCTACGTTCTTGCGAATATCTCCGCGCCGGTGTATGCAC
ACGCCGATCGTCAT
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