mRNA_E-siliculosus-1a_M_contig98.17713.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17713.1 vs. uniprot
Match: D7G0X0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X0_ECTSI) HSP 1 Score: 733 bits (1893), Expect = 7.500e-244 Identity = 633/883 (71.69%), Postives = 639/883 (72.37%), Query Frame = 3
Query: 1464 KTTPHAPKREGDVSIRLGVSVDASTLVGNLPGGGXXXXXXXXXXXXXXXXRSARSPEPDFDAASXXXXXXXXKAIGSGGPDGDRVADRLGGGGYWGGXXXXXPQGHRGSXXXXXXXXXXXXPGDMYAGXXXXXXXXDAILGWGRQEGSNNPGPMGVLGGIGGDQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYSHPLGIPXXXXXXXXXXXXXXXXXXXXXXXGLRPLARDSHFPGHGVSYRDQLQQXXXXXXXXXHHLYAPNPYGFLPHMSSGSQGGYGPGAIGGDNGPEIGGGSIPVSGVLSGRAILPPPSQQSSSRGPVAQPHARRPLPPSPGRSGGGIPGMPGSGMLDGGXXXXXXGMDVGRQGGSLSPFIGHQSSASSSHLRLPLPPAMNGPFQPSFQALDWDDPSGSXXXXXXXXXXXXXXXXXXXXXVQXXXXXXXXXXWPSEAAVPLSHVDYPHQEAADMGMGRDDGRRGGDPADRGLDVEGSGGPXXXXXXXFGTRLPGVDLGQGMMPHFDRMHGIGGGRDSSPGPFHSMGADVGGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDALNGGGAAGRPMSPLMSTLGGESGETPPGLARLRTTGGMSSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGLGNALQHDVPCPPRHNPERSSPSFDALSGTPAAGEVDGPSGSGSGSAAHEXXXXXXMNSRGSGSIGGRQPPQXXXXXXXXEFAPTXXXXXEVSKTSLAPHENGAGGDMVRGEGREDRDAPGGEAEEARKRLRLGELN 4112
KTTPHAPKREGDVSIRLGVSVDASTLVGNLPGGGXXXXXXXXXXX RSARSPEPDFDAAS XXXXX KAIGSGGPDGDRVADRLGGG YWGG XX PQGHRGSXXXXXXXXX PGDMYAGXXXXXXX DAILGWGRQEG NNPGPMGVLGGIGGDQRQ +Y+ + DQ QGGYGPGAIGGDNGPEIGGGSIPVSGVLSGRAILPPPSQQSSSRGPVAQPHARRPLPPSPGRSGGGIPGMPGSGMLDG XXXX MDVGRQGGSLSPFIGHQSS++SSHLRLPLPPAMNGPFQPSFQALDWDDPSGSXXXXXXXXXXXXXX VQ XXXXXXXXXWPSEAAVPLSHVDYPHQEA DMGMGRDDGRRGGDPAD GLDVEG GGPXXXXXXXFGTRLPGVDLGQGMMPHFDRMHGIGGGR SSPGPFHSMGADVGG ASXXXXXXXXXXXXXXXXXXXXXXXXXX E DALN GR MSPLMSTLGGESGETPPGLARLRTTGGMS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGLGNALQHDVP PPRHNPERSSPSFDALSGTPAAGEVDGPSGS XXXXXX SIGGRQPPQ XXXXXXXEFAPTXXXXXEVSKTSLAPHENGAGGDMVRGEGREDR+A GGE EEARKRLRLGELN
Sbjct: 231 KTTPHAPKREGDVSIRLGVSVDASTLVGNLPGGGXXXXXXXXXXXS----RSARSPEPDFDAASGVXXXXX-KAIGSGGPDGDRVADRLGGG-YWGGGAXXGPQGHRGSXXXXXXXXXDQDPGDMYAGXXXXXXX-DAILGWGRQEGGNNPGPMGVLGGIGGDQRQQ---------------------------------------------------------------------------------QYA-------------------------------------------SSAVDDQ-------------------------------QGGYGPGAIGGDNGPEIGGGSIPVSGVLSGRAILPPPSQQSSSRGPVAQPHARRPLPPSPGRSGGGIPGMPGSGMLDGXXXXX---MDVGRQGGSLSPFIGHQSSSASSHLRLPLPPAMNGPFQPSFQALDWDDPSGSXXXXXXXXXXXXXXVG-----VQGXXXXXXXXXWPSEAAVPLSHVDYPHQEAGDMGMGRDDGRRGGDPADGGLDVEGGGGPXXXXXXXFGTRLPGVDLGQGMMPHFDRMHGIGGGRGSSPGPFHSMGADVGG-ASXXXXXXXXXXXXXXXXXXXXXXXXXXAMHSSSSGAGGEIDALNXXXXXGRSMSPLMSTLGGESGETPPGLARLRTTGGMSXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGLGNALQHDVPSPPRHNPERSSPSFDALSGTPAAGEVDGPSGS------XXXXXXXXXXXXXXXSIGGRQPPQQXXXXXXXEFAPTXXXXXEVSKTSLAPHENGAGGDMVRGEGREDRNAAGGEGEEARKRLRLGELN 925
BLAST of mRNA_E-siliculosus-1a_M_contig98.17713.1 vs. uniprot
Match: A0A6H5KHX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX5_9PHAE) HSP 1 Score: 679 bits (1752), Expect = 7.020e-219 Identity = 976/1301 (75.02%), Postives = 998/1301 (76.71%), Query Frame = 3
Query: 393 MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLMKRRSQCVVSXXXXXXXXXXXXXXXXXXXXXXXXXXVYLKNXKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKNCRCKHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPHAPKREGDVSIRLGVSVDASTLVGNLPGGGXXXXXXXXXXXXXXXX--RSARSP-----------------------EPDFDAASXXXXXXXXKAIGSGGPDGDRVADRLGGGGYWGGXXXXXPQGHRGSXXXXXXXXXXXXPGDMYAGXXXXXXXXDAILGWGRQEGS-------NNPGPMGVLGGIGGDQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYSHPLGIPXXXXXXXXXXXXXXXXXXXXXXXGLRPLARDSHFPGHGVSYRDQLQQXXXXXXXXXHHLYAPNPYGFLPHMSSGSQGGYGPGAIGGDNGPEIGGGSIPVSGVLSGRAILPPPSQQSSSRGPVAQPHARRPLPPSPGRSGGGIPGMPGSGMLDGGXXXXXXGMDVGRQGGSLSPFIGHQSSASSSHLRLPLPPAMNGPFQPSFQALDWDDPSGSXXXXXXXXXXXXXXXXXXXXX------------------------VQXXXXXXXXXXWPSEAAVPLSHVDYPHQEAADMGMGRDDGRRGGDPADRGLDVEGSGGPXXXXXXXFGTRLPGVDLGQGMMPHFDRMHGIGGGRDSSPGPFHSMGADVGGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDALNGGGAAGRPMSPLMSTLGGESGETPPGLARLRTTGGMSSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGLGNALQHDVPCPPRHNPERSSPSFDALSGTPAAGEVDGPSGSGSGSAAHEXXXXXX-----MNSRGSGSIGGRQPPQXXXXXXXXEFAPTXXXXXEVSKTSLAPHENGAGGDMVRGEGREDRDAPGGEAEEARKRLRLGELN 4112
MDNTGGGEPDTSDTIDVLKCLRCG EGCTNVPGLGYQGEGPTMCTEHA+PAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLMKRRSQCVVSXXXXXXXXXXXXXXXXXXXXXXXXXXVYLKNXKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKNCRCKHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPHAPKREGDVSIRLGVSVDAS+LVGNL GG XXXXXXXXXXX R RSP E ++ S + G P G VA+ + G +G GD A+ WG S NNPGPMGVLGGIG DQR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EYSHPLGIP XXXXXXXXXX GLRPLARDSHF YRDQLQQ HLY PNPYGFLPHMSSGSQGGYGPGAIGGDNG + S V+ + G + PHARRP PPSPGRSGGGIPGMPG M+D XXXXXX MDVGRQGGSLSPFIGHQSSASSSHLRLPLPPAMNGPFQ SFQALDWDDPSGS XXXXXXXXXXXXXXXXXXX +Q WPSEAAVPLSHVDYPHQEA DMGMGRDDGRRGG PA+ GLD+EGSGGPXXXXXXXFGTRLPGVDLGQGM+PHFDRMHGIGGGRDSSPGPFHS+GA+VG + XXXXXXXXXXXXXXXXXXXXX X ETDALN AAGRPMSPLMSTLGGESGETPPGLARLRT GGMSSEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX STGLGNALQHDVP P +HNPERSSPSFDALSGTPAAGEVDGPSGS XXXXXX MNSRGSGSIGGRQPPQXXXXXXXXEFAPT XXXXEVSKTSLAPHE GAGGDMVRGEGREDRDA GGEAEEARKRLRLGELN
Sbjct: 1 MDNTGGGEPDTSDTIDVLKCLRCGHEGCTNVPGLGYQGEGPTMCTEHAAPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLMKRRSQCVVSXXXXXXXXXXXXXXXXXXXXXXXXXXVYLKNXKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKNCRCKHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPHAPKREGDVSIRLGVSVDASSLVGNLAGGXXXXXXXXXXXXTAAPADRRGHRSPISRPQAAXXXXXXXXXXXXXVRTETEWQTGSAAATGEEERERG---PRGTEVAEA-----WVEGAEMIRIRGTCMRVAAAAAVAMLSWGGDGKKLVCEIEHVEKAL--WGISGASALLCVCGNNPGPMGVLGGIGEDQRHQQYASSAVDDQQALRMRRLGQDPPQDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPD---EYSHPLGIPPPRSSQHXXXXXXXXXXMTGGGGGLRPLARDSHF------YRDQLQQQQQ-------HLYGPNPYGFLPHMSSGSQGGYGPGAIGGDNGEGL-------SDVVFSCGV----------GGVLFMPHARRPFPPSPGRSGGGIPGMPGGXMMD--XXXXXXXMDVGRQGGSLSPFIGHQSSASSSHLRLPLPPAMNGPFQSSFQALDWDDPSGSGXXXXXXXXXXXXXXXXXXXWWPSLPLEIGDDPWGAASTERRGVGMQGGGSAGGDGGWPSEAAVPLSHVDYPHQEAGDMGMGRDDGRRGGGPAEGGLDMEGSGGPXXXXXXXFGTRLPGVDLGQGMIPHFDRMHGIGGGRDSSPGPFHSIGAEVGAASXXXXXXXXXXXXXXXXXXXXXXGAXG------------ETDALNXXXAAGRPMSPLMSTLGGESGETPPGLARLRT-GGMSSEGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------STGLGNALQHDVPSPSQHNPERSSPSFDALSGTPAAGEVDGPSGSXXXXXXXXXXXXXXXXXXXMNSRGSGSIGGRQPPQXXXXXXXXEFAPTAXXXXEVSKTSLAPHEIGAGGDMVRGEGREDRDAAGGEAEEARKRLRLGELN 1235
BLAST of mRNA_E-siliculosus-1a_M_contig98.17713.1 vs. uniprot
Match: D7G0X1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X1_ECTSI) HSP 1 Score: 131 bits (329), Expect = 3.100e-32 Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 3
Query: 393 MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLMKRRSQ 686
MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLMKRRSQ
Sbjct: 1 MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPAMIQIVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLMKRRSQ 98 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17713.1 >prot_E-siliculosus-1a_M_contig98.17713.1 ID=prot_E-siliculosus-1a_M_contig98.17713.1|Name=mRNA_E-siliculosus-1a_M_contig98.17713.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1241bp MDNTGGGEPDTSDTIDVLKCLRCGQEGCTNVPGLGYQGEGPTMCTEHASPback to top mRNA from alignment at E-siliculosus-1a_M_contig98:315626..327930- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17713.1 ID=mRNA_E-siliculosus-1a_M_contig98.17713.1|Name=mRNA_E-siliculosus-1a_M_contig98.17713.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=12305bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:315626..327930- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:315626..327930- >mRNA_E-siliculosus-1a_M_contig98.17713.1 ID=mRNA_E-siliculosus-1a_M_contig98.17713.1|Name=mRNA_E-siliculosus-1a_M_contig98.17713.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7446bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:315626..327930- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |