mRNA_E-siliculosus-1a_M_contig97.17651.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig97.17651.1
Unique NamemRNA_E-siliculosus-1a_M_contig97.17651.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig97.17651.1 vs. uniprot
Match: D7FTP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP9_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 1.120e-185
Identity = 250/257 (97.28%), Postives = 253/257 (98.44%), Query Frame = 1 
Query:    1 MEQIRVKNGYGFLTSTLSASVIGDFDASSEKRKATNRAWNQKYDTDAVFQMSQLQGNHPVRKVLHMQKCYPETVFRLNRQGRTHKPDADRPISGRWHRNPAPNNYNTSVATQQRHRRPQSSLQVGRSADGGHELSGNTTRRRGGYEYHFCRDKMAYNRTKGREAEVDGILTGRSPLDKRLPLFPAKATHQQLLGLVHRPTHPDKPAPAVPRERKWLGDNVGWEGNRGMATPPAGRNAKDGEVHPWPSSQYPLVLPTG 771
            MEQIRVKNGYGFLTSTLSASVIGDFDASSE+RKATNRAWNQKYDTDAVFQM QLQGNHPVRKVLHMQKCYPETVFRLNRQGRTH+PDADRPISGRWHRNPAPNNYNTSVATQQRHRRPQSSLQ  RSADGGHELSGNTTRRRGGYEYHFCRDKMAYNRT+GREAEVDGILTG SPLDKRLPLFPAKATHQQLLGLVHRPTHPDKPAPAVPRERKWLGDNVGWEGNRGMATPPAGRNAKDGEVHPWPSSQYPLVLPTG
Sbjct:    1 MEQIRVKNGYGFLTSTLSASVIGDFDASSEERKATNRAWNQKYDTDAVFQMRQLQGNHPVRKVLHMQKCYPETVFRLNRQGRTHEPDADRPISGRWHRNPAPNNYNTSVATQQRHRRPQSSLQADRSADGGHELSGNTTRRRGGYEYHFCRDKMAYNRTRGREAEVDGILTGTSPLDKRLPLFPAKATHQQLLGLVHRPTHPDKPAPAVPRERKWLGDNVGWEGNRGMATPPAGRNAKDGEVHPWPSSQYPLVLPTG 257
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig97.17651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTP9_ECTSI1.120e-18597.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig97contigE-siliculosus-1a_M_contig97:241373..243588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size774
Model size774
Exons4
Ec32 orthologEc-06_009320.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig97.17651.1prot_E-siliculosus-1a_M_contig97.17651.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig97 241373..243588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936547.7872891-CDS-E-siliculosus-1a_M_contig97:241372..2414671622936547.7872891-CDS-E-siliculosus-1a_M_contig97:241372..241467Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 241373..241467 +
1696251125.1800933-CDS-E-siliculosus-1a_M_contig97:241372..2414671696251125.1800933-CDS-E-siliculosus-1a_M_contig97:241372..241467Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 241373..241467 +
1622936547.8835344-CDS-E-siliculosus-1a_M_contig97:242094..2424841622936547.8835344-CDS-E-siliculosus-1a_M_contig97:242094..242484Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 242095..242484 +
1696251125.1904316-CDS-E-siliculosus-1a_M_contig97:242094..2424841696251125.1904316-CDS-E-siliculosus-1a_M_contig97:242094..242484Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 242095..242484 +
1622936547.9584343-CDS-E-siliculosus-1a_M_contig97:242682..2428671622936547.9584343-CDS-E-siliculosus-1a_M_contig97:242682..242867Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 242683..242867 +
1696251125.200862-CDS-E-siliculosus-1a_M_contig97:242682..2428671696251125.200862-CDS-E-siliculosus-1a_M_contig97:242682..242867Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 242683..242867 +
1622936547.9735148-CDS-E-siliculosus-1a_M_contig97:243484..2435881622936547.9735148-CDS-E-siliculosus-1a_M_contig97:243484..243588Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 243485..243588 +
1696251125.2109008-CDS-E-siliculosus-1a_M_contig97:243484..2435881696251125.2109008-CDS-E-siliculosus-1a_M_contig97:243484..243588Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig97 243485..243588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig97.17651.1

>prot_E-siliculosus-1a_M_contig97.17651.1 ID=prot_E-siliculosus-1a_M_contig97.17651.1|Name=mRNA_E-siliculosus-1a_M_contig97.17651.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=258bp
MEQIRVKNGYGFLTSTLSASVIGDFDASSEKRKATNRAWNQKYDTDAVFQ
MSQLQGNHPVRKVLHMQKCYPETVFRLNRQGRTHKPDADRPISGRWHRNP
APNNYNTSVATQQRHRRPQSSLQVGRSADGGHELSGNTTRRRGGYEYHFC
RDKMAYNRTKGREAEVDGILTGRSPLDKRLPLFPAKATHQQLLGLVHRPT
HPDKPAPAVPRERKWLGDNVGWEGNRGMATPPAGRNAKDGEVHPWPSSQY
PLVLPTG*
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mRNA from alignment at E-siliculosus-1a_M_contig97:241373..243588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig97.17651.1 ID=mRNA_E-siliculosus-1a_M_contig97.17651.1|Name=mRNA_E-siliculosus-1a_M_contig97.17651.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2216bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:241373..243588+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAACAAATCCGTGTCAAAAATGGGTACGGGTTTCTGACGTCCACCCT
AAGTGCATCCGTCATCGGGGACTTCGATGCGAGCTCGGAGAAAAGGTGGG
TAGGCGACGACTGTTGCCTCACGGAGGGTACATGTACTGTAGCCTCGAGC
TTCCACATCGATTCAAGTCTGATCCACATACCGATTCGTCCTTCCTATGT
GTATGCTCGTGCTACATGTAGTGCGTTCTTGAAGCTCGCTATCTTTTGGC
GTATATCTACGCATACGACGCGATGCCACGGGAAGAGATCGGTGCTCACA
CCTCCTATTGACATGCGAGAGCCACCGCCTGCAGCACAGGAGACTGAGTG
CGCGTATATCCTATGCCATAGTCCTTCAATTCCTTTGCAGCTGTACGAAG
TTGTTTGTGTTCCTTATCTGGGTATCGTGGTAAACTTGTGTGTGCATTGG
TTAGGACAGGGAGGCAAGGACAAACACGCGAAAATCAGTAGACCTACTCC
GCATGGTTGAACACGCACAACAATTCGCAGTATTCATTGTATCACGAGGT
TATGTACTTGGCGTCCGTGATTCCCCAGATCGTCGCCCATTTTGTCTGGT
GTGTAACACCACAAACGAGTCAAACGCAGAGTAGACAACGCAGAACATGT
TGTAGGCGTTGATGTGCCCCCTCCCCCCCCAATCTGTGTCCATGACTACT
GCCTCCCTGAATGAACTCGCAGAAAGGCAACGAACCGAGCTTGGAACCAA
AAATACGACACGGACGCCGTGTTCCAAATGTCGCAACTGCAAGGAAACCA
CCCGGTGCGCAAGGTCTTGCACATGCAAAAGTGCTATCCCGAGACGGTCT
TCCGCCTCAACAGACAGGGCCGTACACACAAACCGGACGCCGACCGCCCA
ATCAGCGGCAGATGGCATCGAAACCCAGCCCCCAACAACTACAACACTTC
CGTCGCCACACAACAGCGTCACCGGCGGCCACAATCGTCGCTCCAGGTAG
GCCGTAGCGCCGATGGCGGGCACGAACTGTCCGGAAACACGACGCGAAGA
CGAGGGGGATACGAATACCACTTCTGCCGTGACAAGATGGCGTACAATCG
GACCAAGGGAAGGTAATGCAGTTGGTTGCCATTCTCTCCTCCACTCCTTG
CGGTAAACTGGTACCCCAAGTGGCCATTGTGCTTCCAACAGCCAACAGAT
GCCCCCCGACGAACGAGGAGCCGATCAAGCGTCCAACTCGCGCGGCTTTG
TCTTCTTCACGGATGTGAGGTACCACACGCTGACGCTTTTGTCTTGCCTC
CCGCTGCCAGGGAAGCGGAGGTGGACGGCATCCTCACCGGAAGGTCGCCT
CTCGACAAAAGGTTACCCTTGTTTCCGGCGAAGGCGACGCATCAGCAGCT
CCTGGGGCTGGTCCATCGGCCGACCCACCCGGACAAGCCAGCCCCGGCGG
TGCCGAGGGAAAGGAAATGGCTCGGCGACAACGTCGGCTGGGAAGGTGAG
ACTATCTTCTTGCTATGTTTTCCCGAAACTCGTTTTTAGGGTGCGGCATA
AACTGCCACACGCGGTCTCACGAAACGGGCGGGCTAGGAAGCCAATGAAT
CATACCAACGAATCATTCCAACACCTCGCGTGTAAGCACGTGTATATAGT
AGCCTAGTCCCTGAAACTGTTAGCATCACCCAGCAGATCGTGCGGTCAGG
GTTTCAAGACCATGCGGTCAGATAGATGTACAAGCAAGCACATTCCGTGT
GGCAAATACCAGGACGAGGGGTATTACGTGTGTGCTGGGACAACGAGCAC
GACAACTAGGGCGCCTCCTCACGACAAGGAGGACCATCTAGTGGCTTAGG
CACCCCGGGTGGTTCAATACTCAGACTCGATCACGGAATTTCTGACAGAA
AAAAGAACACTGTTTAGCGGGGATATGGCAATGTTTGGCGGGGCAAGCAC
CTGAAAAACTATGGTGGGAGTGGTGGTGCCCGGCACCCAGGCTCCCCTAA
CACCTCCCGAAGGGTTTTAAAGAACTCTGCCCATAGACTAGCTCTAATGT
TTTCGAACTTTTCCATCTTCCGCGCGTCATTTCTCCTTCGAAACTGCCCC
CGAACGCGGCAGGAAATCGAGGGATGGCCACTCCGCCAGCCGGTCGCAAT
GCCAAAGACGGGGAGGTTCATCCGTGGCCGTCGTCGCAGTATCCTCTTGT
TCTTCCGACCGGTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig97:241373..243588+

>mRNA_E-siliculosus-1a_M_contig97.17651.1 ID=mRNA_E-siliculosus-1a_M_contig97.17651.1|Name=mRNA_E-siliculosus-1a_M_contig97.17651.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1548bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig97:241373..243588+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAACAAATCCGTGTCAAAAATGGGTACGGGTTTCTGACGTCCACCCT
AAGTGCATCCGTCATCGGGGACTTCGATGCGAGCTCGGAGAAAAGATGGA
ACAAATCCGTGTCAAAAATGGGTACGGGTTTCTGACGTCCACCCTAAGTG
CATCCGTCATCGGGGACTTCGATGCGAGCTCGGAGAAAAGAAAGGCAACG
AACCGAGCTTGGAACCAAAAATACGACACGGACGCCGTGTTCCAAATGTC
GCAACTGCAAGGAAACCACCCGGTGCGCAAGGTCTTGCACATGCAAAAGT
GCTATCCCGAGACGGTCTTCCGCCTCAACAGACAGGGCCGTACACACAAA
CCGGACGCCGACCGCCCAATCAGCGGCAGATGGCATCGAAACCCAGCCCC
CAACAACTACAACACTTCCGTCGCCACACAACAGCGTCACCGGCGGCCAC
AATCGTCGCTCCAGGTAGGCCGTAGCGCCGATGGCGGGCACGAACTGTCC
GGAAACACGACGCGAAGACGAGGGGGATACGAATACCACTTCTGCCGTGA
CAAGATGGCGTACAATCGGACCAAGGGAAGAAAGGCAACGAACCGAGCTT
GGAACCAAAAATACGACACGGACGCCGTGTTCCAAATGTCGCAACTGCAA
GGAAACCACCCGGTGCGCAAGGTCTTGCACATGCAAAAGTGCTATCCCGA
GACGGTCTTCCGCCTCAACAGACAGGGCCGTACACACAAACCGGACGCCG
ACCGCCCAATCAGCGGCAGATGGCATCGAAACCCAGCCCCCAACAACTAC
AACACTTCCGTCGCCACACAACAGCGTCACCGGCGGCCACAATCGTCGCT
CCAGGTAGGCCGTAGCGCCGATGGCGGGCACGAACTGTCCGGAAACACGA
CGCGAAGACGAGGGGGATACGAATACCACTTCTGCCGTGACAAGATGGCG
TACAATCGGACCAAGGGAAGGGAAGCGGAGGTGGACGGCATCCTCACCGG
AAGGTCGCCTCTCGACAAAAGGTTACCCTTGTTTCCGGCGAAGGCGACGC
ATCAGCAGCTCCTGGGGCTGGTCCATCGGCCGACCCACCCGGACAAGCCA
GCCCCGGCGGTGCCGAGGGAAAGGAAATGGCTCGGCGACAACGTCGGCTG
GGAAGGGAAGCGGAGGTGGACGGCATCCTCACCGGAAGGTCGCCTCTCGA
CAAAAGGTTACCCTTGTTTCCGGCGAAGGCGACGCATCAGCAGCTCCTGG
GGCTGGTCCATCGGCCGACCCACCCGGACAAGCCAGCCCCGGCGGTGCCG
AGGGAAAGGAAATGGCTCGGCGACAACGTCGGCTGGGAAGGAAATCGAGG
GATGGCCACTCCGCCAGCCGGTCGCAATGCCAAAGACGGGGAGGTTCATC
CGTGGCCGTCGTCGCAGTATCCTCTTGTTCTTCCGACCGGTTGAGAAATC
GAGGGATGGCCACTCCGCCAGCCGGTCGCAATGCCAAAGACGGGGAGGTT
CATCCGTGGCCGTCGTCGCAGTATCCTCTTGTTCTTCCGACCGGTTGA
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