mRNA_E-siliculosus-1a_M_contig96.17588.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17588.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17588.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: D8LQ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ88_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 9.200e-99
Identity = 154/163 (94.48%), Postives = 156/163 (95.71%), Query Frame = 1 
Query:  187 MTTSRGGCWSTLIEEESGCQTCIVQATSSSTTATDDPPAAQWNSSVFSTFFEMELDPCPESVSDIYGTPPGGVVSYQEVLSADCRDSDXXXXXXXXXXSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG 675
            MTTSRGGCWSTLIEE+SGCQTCIVQATSSSTTATDDPPA+QWNSSVFS FFEMELDPCPESVSD YGTPPGGVVSYQEVLSADCR SD   XXXXXX SVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG
Sbjct:    1 MTTSRGGCWSTLIEEQSGCQTCIVQATSSSTTATDDPPASQWNSSVFSKFFEMELDPCPESVSDFYGTPPGGVVSYQEVLSADCRHSDDDNXXXXXXDSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG 163
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: D8LHR0_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR0_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.780e-41
Identity = 106/282 (37.59%), Postives = 145/282 (51.42%), Query Frame = 1 
Query:  145 RGKGAFFSGCTSRSMTTSRGGCWST------LIEEESGCQTCIVQATSSSTTATDDPPAAQWNSSVFSTFFEMELDPCPESV--SDIYGTPPGGV--VSYQEVLSADCRDSDXXXXXXXXXXSVWLAFENS--CYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGA---SCLEITPYYPKAWNPFSCEVNKQYVCERPAAPG---SGSSSP 936
            RGKGAF SGC + S  +  GGCW+        IEE  GCQTC +Q  +             ++ +VF   F  ELDPCP+ +  + +Y    GG+  V+   + S  C +              WL FE++  CY KS     A N  DA + C E GA +++++SEAENDF+ HN+L+ GF GE YTG+ K S    W W    +      ++    + DW EG +   +    G    SC+EI PY PK WNPFSC+V K YVCE PA  G   +G++SP
Sbjct:    6 RGKGAFLSGCVTLSDESYLGGCWTQDDDFGERIEETDGCQTCTIQEDA-------------FSEAVFPIMFPAELDPCPDDLDYTALYEGTYGGLSLVTAASLSSTGCPEG-------------WLYFEDTGNCYFKSPNTAKAENQADAVSICEEEGAWVIAIDSEAENDFLLHNMLFTGFFGETYTGMTKESPSDEWEWPAESSDTA---YNCVGDYSDWLEGAEIGCAAVFDGGEDGSCMEIFPYEPKGWNPFSCDVGKHYVCEMPATAGGEETGTASP 258
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: A0A383WIY0_TETOB (C-type lectin domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WIY0_TETOB)

HSP 1 Score: 95.1 bits (235), Expect = 9.010e-17
Identity = 98/328 (29.88%), Postives = 140/328 (42.68%), Query Frame = 1 
Query:  112 CATLVPIEDRRRGKGAFFSGCTSRSMTTSRGGCWSTLIEEESGCQTCIVQATSSSTTATDDPPAAQWNSSVFSTFFEMELDPCPESVSDIY------GTPPGGVVSYQEVLSADCRDSDXXXXXXXXXXSVWL--AFENSCYSKSS-YLDAAVNWEDADARCGEV--GARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQK--TSD---DGTWSWRDSLAGFTP-----GDFDASVSFQDW---GEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCER-PAAPGSGSSSPQQSATTGPELSPSPVDDGVARGSQGTPA 1020
            C  L+  E+  RG G F+      S   S  G W  +    + C+TCI   TS +  A+DD PA                  CP  V   Y            VV     L+ +               + WL     + CY KSS     +  +++A  RC  +  GA ++++    E++FV  NLL++G  GE YTGL+K  +SD   D  W W  + +  T      G      S+ ++   G G+    SY   G  C+EI P  PK WNPF+C+V KQY+CER P  PG   ++P    T GP  +P+     V   + G PA
Sbjct:   26 CPALMAEEEVIRGFGTFYD-----STCASAAGDWGGV----NCCRTCIWHNTSVAQFASDDLPA------------------CPPCVRQYYEAAFRLANASLNVVPLTAYLNPE---------KCPFGANGWLYNPANDRCYYKSSGRRGISSGFDNAVMRCNTLHAGASMININDAQEDEFVRLNLLYVGTFGETYTGLKKLGSSDPAFDNQWYWLQNASQLTAPLASVGSRLLPTSYNNFNYPGRGI----SYSEAGPLCMEILPQKPKFWNPFACDVIKQYLCERAPVQPGENYTTPALPCT-GPPAAPAGTARTVLLVNAGGPA 312
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: A0A7J7Q9X4_9CHLO (C-type lectin domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q9X4_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 2.510e-11
Identity = 72/200 (36.00%), Postives = 95/200 (47.50%), Query Frame = 1 
Query:  481 SVWL--AFENSCYSKSSY---LDAAVNWEDADARCGEV--GARLVSLESEAENDFVTHNLLWIGFLGEAYT----------GLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPAA-PGS--GSSSPQQSATTGPELSPSPVDDGVARGSQGTPA 1020
            S WL     N CY KSSY   + A +   DA  RC  +  GA ++++    E +FV  NLL+ GF GE YT          GLQ       W+  +S+A     D+    +F + G G D    Y  +   C+EI P  PK +NPFSC V KQY+CER  A PG   G     Q   TGP  +P+     V+  + G PA
Sbjct:  100 SGWLYNPANNRCYYKSSYDRGISAGIT--DAINRCFTLHAGASILNIADAQEEEFVRLNLLYAGFFGETYTSCICPSATARGLQLPQ--AAWARPESVAT----DYH---NFNEPGRGFD----YYESEVVCMEILPNKPKYYNPFSCAVLKQYICERSVAQPGETFGPGPTPQLPCTGPPAAPAGALRTVSLVNAGGPA 284
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: K1QVJ2_CRAGI (Low affinity immunoglobulin epsilon Fc receptor n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QVJ2_CRAGI)

HSP 1 Score: 68.2 bits (165), Expect = 6.040e-10
Identity = 46/166 (27.71%), Postives = 71/166 (42.77%), Query Frame = 1 
Query:  409 SYQEVLSADCRDSDXXXXXXXXXXSVWLAFENSCYSKSSYLDAAVN-WEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCER 903
            S   V S  CRD              WL   NSCY+   ++DA  + W +A   C  VGA+LV +E+E+EN+F+  +L  IG     + GL     +G + W+ +           +V + DW  G      +      C E+   +   WN   C V   ++CE+
Sbjct:   13 SVYAVNSQGCRDG-------------WLHHGNSCYA---FIDAEPDGWIEAMFYCSSVGAKLVEIETESENNFLKRHLQTIGATKNYWIGLSDAIKEGRFVWQTTQD---------NVDYTDWAPGEPNDDHHTE---DCAELFQPFSFHWNDAPCSVKSNFICEK 150
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: A0A485P1I4_LYNPA (C-type lectin domain family 4 n=1 Tax=Lynx pardinus TaxID=191816 RepID=A0A485P1I4_LYNPA)

HSP 1 Score: 62.4 bits (150), Expect = 5.400e-8
Identity = 42/143 (29.37%), Postives = 68/143 (47.55%), Query Frame = 1 
Query:  487 WLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYT---GLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERP 906
            W +F++SCY     L+    W  ++  C ++GA LV++ SEAE +F+      + FL   ++   GL     +G WSW D     TP  FD  + F  W EG    ++Y+      + +      AWN F C   ++ +C+ P
Sbjct:   17 WRSFQDSCYLP---LNDNKTWAKSERNCTDMGAHLVTITSEAEQNFI------VQFLDRRFSYFLGLTDEDHEGQWSWVDK----TP--FDPHIVF--WHEGEP--NNYKQNENCVILVNVQDKWAWNDFPCNFERRRICKLP 140
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: A0A6J8DY73_MYTCO (C-type lectin domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DY73_MYTCO)

HSP 1 Score: 63.9 bits (154), Expect = 7.660e-8
Identity = 40/142 (28.17%), Postives = 61/142 (42.96%), Query Frame = 1 
Query:  487 WLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFD-ASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPA 909
            W++F N CY    ++   V W+ A   C   G RLV +++  E+ ++T  L       E + G+     +G W W          DFD +S+SF  W  G       E+ G  C +        WN   C +   YVCE+P+
Sbjct:  107 WISFSNHCYL---FVYEKVTWKHAKVECQNKGGRLVKIDNNDEDSWLTSVL-----KDEVWMGMSDIQIEGYWIW----------DFDMSSLSFNQWHPGEPNGGGRENCGLYCKQRCKQSSFVWNDAVCSLVYGYVCEKPS 230
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: A0A7J7PFC2_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PFC2_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 8.030e-8
Identity = 70/215 (32.56%), Postives = 91/215 (42.33%), Query Frame = 1 
Query:  481 SVWL--AFENSCYSKSSY---LDAAVNWEDADARCGEV--GARLVSLESEAENDFVTHNLLWIGFLGEAYT----------GLQKTSDDGTWSWRDSLAGFTPGDFDASVS---------------FQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPAA-PGS--GSSSPQQSATTGPELSPSPVDDGVARGSQGTPA 1020
            S WL     + CY KSSY   + A +   DA  RC  +  GA ++++    E +FV  NLL+ GF GE YT           LQ        + +  +    P     SVS               F + G G D    Y      C+EI P  PK +NPFSC V KQY+CER  A PG   G     Q   TGP  +P+     V+  + G PA
Sbjct:  108 SGWLYNPANDRCYYKSSYDRGISAGIT--DAINRCFTLHAGASILNIADAQEEEFVRLNLLYAGFFGETYTFNALPSCVARPLQYMLRMPLQAHQVLVEAGMPSSMSHSVSGAVLHSAKQATDYHNFNEPGRGFD----YYELEVVCMEILPNKPKYYNPFSCAVLKQYICERSVAQPGETFGPGPTPQLPCTGPPAAPAGALRTVSLVNAGGPA 316
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: UPI00046B7F83 (C-type lectin domain family 4 member E isoform X1 n=2 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00046B7F83)

HSP 1 Score: 62.8 bits (151), Expect = 1.750e-7
Identity = 48/169 (28.40%), Postives = 76/169 (44.97%), Query Frame = 1 
Query:  403 VVSYQEVLSADCRDSDXXXXXXXXXXSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPA 909
            V  Y+E +  +C ++           S W+ F++SCY  S+     + W ++   C  +GA LV + SE E +F+ H         E Y GL     DG W W D     TP  F  S+SF  W EG + ++       + +  +    + WN  +C +N  ++CE PA
Sbjct:   57 VQPYEEFVEFNCYNNVSGSVKNCCPLS-WIHFQSSCYFFSTN---TLTWSESVKNCSSMGAHLVVINSEEEQEFLFHAK---PKNREFYIGLTDQVIDGQWKWVDG----TP--FTESLSF--WAEG-EPNNLVTVEDCATIRDSKNPRQNWNDMACFLNMFWICEMPA 209
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Match: A0A6P4WWQ3_PANPR (C-type lectin domain family 4 member D n=14 Tax=Felidae TaxID=9681 RepID=A0A6P4WWQ3_PANPR)

HSP 1 Score: 60.8 bits (146), Expect = 6.500e-7
Identity = 43/140 (30.71%), Postives = 67/140 (47.86%), Query Frame = 1 
Query:  487 WLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERP 906
            W +F++SCY     L+    W  ++  C ++GA LV++ SEAE +F+   LL   F    + GL     +G WSW D     TP  FD  + F  W EG    ++Y+      + +      AWN F C   ++ +C+ P
Sbjct:   84 WRSFQDSCYLP---LNDNKTWAKSERNCTDMGAHLVTITSEAEQNFIIQ-LLDRRF--SYFLGLTDEDHEGQWSWVDK----TP--FDPHIVF--WHEGEP--NNYKQNENCVILVNVQDKWAWNDFPCNFERRRICKLP 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ88_ECTSI9.200e-9994.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHR0_ECTSI1.780e-4137.59C-type lectin domain-containing protein n=1 Tax=Ec... [more]
A0A383WIY0_TETOB9.010e-1729.88C-type lectin domain-containing protein n=2 Tax=Te... [more]
A0A7J7Q9X4_9CHLO2.510e-1136.00C-type lectin domain-containing protein n=1 Tax=Sc... [more]
K1QVJ2_CRAGI6.040e-1027.71Low affinity immunoglobulin epsilon Fc receptor n=... [more]
A0A485P1I4_LYNPA5.400e-829.37C-type lectin domain family 4 n=1 Tax=Lynx pardinu... [more]
A0A6J8DY73_MYTCO7.660e-828.17C-type lectin domain-containing protein n=1 Tax=My... [more]
A0A7J7PFC2_9CHLO8.030e-832.56Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
UPI00046B7F831.750e-728.40C-type lectin domain family 4 member E isoform X1 ... [more]
A0A6P4WWQ3_PANPR6.500e-730.71C-type lectin domain family 4 member D n=14 Tax=Fe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:352601..357726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1617
Model size1617
Exons8
Ec32 orthologEc-26_005740.1
Ec32 ortholog descriptionC-type lectin fold
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko04090,ko04091,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelAves
COG Functional cat.T
EggNOG OGs38GR9@33154,3BBE1@33208,3CTZ0@33213,4803E@7711,48X4Q@7742,4GKFD@8782,KOG4297@1,KOG4297@2759
EggNOG free text desc.Macrophage mannose receptor 1-like
GOsGO:0002237,GO:0002376,GO:0003674,GO:0004888,GO:0005488,GO:0005537,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005886,GO:0005887,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009986,GO:0009987,GO:0010008,GO:0010033,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0023052,GO:0030246,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0032496,GO:0033993,GO:0034097,GO:0034341,GO:0036094,GO:0038023,GO:0038024,GO:0042221,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045087,GO:0048029,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0051716,GO:0060089,GO:0065007,GO:0070670,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071346,GO:0071353,GO:0071396,GO:0071944,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:1901700,GO:1901701
KEGG Pathwayko04145,ko05152,map04145,map05152
KEGG koko:K06560
Preferred nameMRC1
Seed eggNOG ortholog59894.ENSFALP00000007767
Seed ortholog evalue2.1e-09
Seed ortholog score70.9
Taxonomic scopeMetazoa
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17588.1prot_E-siliculosus-1a_M_contig96.17588.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 352601..357726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936534.6760578-CDS-E-siliculosus-1a_M_contig96:352600..3528111622936534.6760578-CDS-E-siliculosus-1a_M_contig96:352600..352811Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 352601..352811 -
1696251120.802269-CDS-E-siliculosus-1a_M_contig96:352600..3528111696251120.802269-CDS-E-siliculosus-1a_M_contig96:352600..352811Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 352601..352811 -
1622936534.6936755-CDS-E-siliculosus-1a_M_contig96:353598..3537811622936534.6936755-CDS-E-siliculosus-1a_M_contig96:353598..353781Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 353599..353781 -
1696251120.8170993-CDS-E-siliculosus-1a_M_contig96:353598..3537811696251120.8170993-CDS-E-siliculosus-1a_M_contig96:353598..353781Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 353599..353781 -
1622936534.7104213-CDS-E-siliculosus-1a_M_contig96:354336..3546831622936534.7104213-CDS-E-siliculosus-1a_M_contig96:354336..354683Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 354337..354683 -
1696251120.8279552-CDS-E-siliculosus-1a_M_contig96:354336..3546831696251120.8279552-CDS-E-siliculosus-1a_M_contig96:354336..354683Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 354337..354683 -
1622936534.7268822-CDS-E-siliculosus-1a_M_contig96:355390..3555931622936534.7268822-CDS-E-siliculosus-1a_M_contig96:355390..355593Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 355391..355593 -
1696251120.842348-CDS-E-siliculosus-1a_M_contig96:355390..3555931696251120.842348-CDS-E-siliculosus-1a_M_contig96:355390..355593Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 355391..355593 -
1622936534.7457504-CDS-E-siliculosus-1a_M_contig96:356132..3562391622936534.7457504-CDS-E-siliculosus-1a_M_contig96:356132..356239Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 356133..356239 -
1696251120.8536747-CDS-E-siliculosus-1a_M_contig96:356132..3562391696251120.8536747-CDS-E-siliculosus-1a_M_contig96:356132..356239Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 356133..356239 -
1622936534.7670183-CDS-E-siliculosus-1a_M_contig96:356439..3567441622936534.7670183-CDS-E-siliculosus-1a_M_contig96:356439..356744Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 356440..356744 -
1696251120.8645797-CDS-E-siliculosus-1a_M_contig96:356439..3567441696251120.8645797-CDS-E-siliculosus-1a_M_contig96:356439..356744Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 356440..356744 -
1622936534.7841785-CDS-E-siliculosus-1a_M_contig96:357273..3574581622936534.7841785-CDS-E-siliculosus-1a_M_contig96:357273..357458Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 357274..357458 -
1696251120.874132-CDS-E-siliculosus-1a_M_contig96:357273..3574581696251120.874132-CDS-E-siliculosus-1a_M_contig96:357273..357458Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 357274..357458 -
1622936534.8015592-CDS-E-siliculosus-1a_M_contig96:357650..3577261622936534.8015592-CDS-E-siliculosus-1a_M_contig96:357650..357726Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 357651..357726 -
1696251120.8837774-CDS-E-siliculosus-1a_M_contig96:357650..3577261696251120.8837774-CDS-E-siliculosus-1a_M_contig96:357650..357726Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 357651..357726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17588.1

>prot_E-siliculosus-1a_M_contig96.17588.1 ID=prot_E-siliculosus-1a_M_contig96.17588.1|Name=mRNA_E-siliculosus-1a_M_contig96.17588.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=539bp
MYQSRKVKRGVVASNTVVLAVVLGSVTGILAASTTEECATLVPIEDRRRG
KGAFFSGCTSRSMTTSRGGCWSTLIEEESGCQTCIVQATSSSTTATDDPP
AAQWNSSVFSTFFEMELDPCPESVSDIYGTPPGGVVSYQEVLSADCRDSD
DDNDDNDDSDSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSL
ESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFD
ASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCE
RPAAPGSGSSSPQQSATTGPELSPSPVDDGVARGSQGTPAPTASATASFV
GSASSEEFSSNFRTESPTGSPTGSPTSAPTAMYSLADGTMVARDDASCAE
RLGEHEQLSLATYDMSVFNDAAGCEETLLTEEPHWCNSFEIGQECRSCWL
SCDGARLYLAEFSWLRDDKIIFCPGVGLSDFGDDCGNDDNNGHNDDNSRP
RHRNLRETFQKFDSLSQETAPAIRSLLSSQFRVFLRRP*
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mRNA from alignment at E-siliculosus-1a_M_contig96:352601..357726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17588.1 ID=mRNA_E-siliculosus-1a_M_contig96.17588.1|Name=mRNA_E-siliculosus-1a_M_contig96.17588.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5126bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:352601..357726- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTACCAAAGCCGGAAAGTGAAGCGTGGTGTAGTGGCAAGCAACACAGT
GGTGCTCGCGGTTGTTCTGGGCTCAGGTACGGTCGCACGGCGTCCCGGAA
ATGTATGTATCGGTCGGTTGCAGCTGCTGGCAACCAACACAGATCGGTGA
GGCATGCGATCCATGAAGATCGCGAGAAAAAATAAAGATCCGAATGGCCT
CCGCCGTCATCTGATATGACGGACCAACTGCCTTTGCATTTTGTTCGCGA
AAAACACAACAAACGCAGTCACAGGTATCCTGGCCGCGTCGACCACTGAA
GAATGTGCGACGCTGGTGCCGATTGAAGACCGAAGGAGGGGGAAAGGGGC
GTTTTTCAGCGGCTGTACAAGCCGGTCGATGACTACTAGCCGCGGCGGGT
GCTGGTCTACGCTCATCGAAGAGGAGAGTGGGTGCCAAACGTGCATTGTG
CAGGTCCGCATCTCGTCCTTAGATCATGTGTTGCTGTGCACTCGTTGTCT
CTCTGTGGTCGGTGGTTTTTAGATAGTCTGTGGATACATTCCATTCACCG
TGTACCGGTGCGTGAACTACTGCTGTAACAACTGGTGCTGCTGATGTTGT
AAAATATGTTTGTGTTCTAGTTTGCAGTCCCATCACTTCTTTCTACGGCA
GGGTTTTCCCCGCTTTCCGAATCCGGTGATGACGTGTGTGCTCACGTTGT
TTCGTACCACAGATGATAGGAATAGGTCCTAGGGGTGGCAAATCTGACCA
ACACAATACGGAAGTGCGACTCCCGCAGAGATCCTCCCAAAGCCTCCTCC
CAAAGCCAACATGCTCGATATCGCCACCCTCCCTGTTGCGTAGTAATCAA
GCGTCCATATGGTCCAGGAGATGAGTTCTTCTACCCCCTCGAGTATATCC
TCCTCCTCCCCTGGCGCTCCAAAGTAGTTGTGTATCATCATGCTGAATGT
TGTCGTCCCGAACGGGTGAACCAACACCACAGGCCACCAGCAGCAGCACA
ACCGCAACCGATGACCCGCCGGCGGCACAGTGGAATTCCTCGGTGTTCAG
CACGTTCTTCGAGATGGAGCTAGACCCTTGCCCCGAATCCGTCTCTGATA
TATACGGGACTCCGCCAGGGGGCGTCGTGTCCTACCAGGAGGTGCTATCG
GCCGACTGCCGTGACAGCGACGACGACAATGACGACAATGACGACAGCGA
CAGCGTGTGGCTCGCGTTCGAGAACAGCTGCTACTCCAAGAGCTCATACT
TGGACGCGGCAGTCAACTGGGAGGATGCGGACGCTAGGTGAGTAGACAGA
GGTTTCTCAGAGGACAGATGATGGGCTTTCCTGGCAAGACCACCCGATCG
CCTTAGCTGTTTTTTTTGGGGGGCCCCAGTCAGGCAAAAATTGGTATCCA
CGAGAATTTCTGTGGCTGTTAGTCGCTTTTTCGTTCACGTCGGTTTCTCT
GGATGAACGGGGGTGACGACGTTGGGTCCAATTACAGGTGTGGGGAGGTG
GGTGCGAGGCTCGTGAGCCTTGAAAGCGAGGCCGAGAATGACTTCGTCAC
TCACAATCTGCTGTGGATTGGTTTCCTTGGCGAGGCGTACACAGGTGAGC
TTTTCCTTCTTCCGGGCGGTGCTCCAGGCAAGACTTCGTGCCCCCCTAGG
AGTCTCGCACCTCATACAAATGCTGCCTGCCTACAGTGCACCAGAATGGC
GTTGAGTGATGTGATACGCAATCGAGAGCATTACTACCCAGCTTTTGTCC
TCCCTCCTCCGCCCTGATCTGCACACGCCACAAAGAACATGGGGGTGCTG
GCGTCGAACCCATCCACCCGCTCTCACAACTTTCGTTCGCCGCCCCCTAT
AGAAACCCAAAGGTGTAGGTATAATGTTGCACCGCTGATTGTGCAAGGAA
TGTTGTCTCGGTAAACCCCGAGCCTAACACTCACGGAAACGTGCCAGCTG
GTGTGCCTTATACCGCGACCGTGGAAGGGGGGCCTACTGCAACCATGTTC
GACAGAAGGCTGGACATGGTTGACCTCTACCAACGTACGTGGAATTCATG
ATTTTATGATGGTCATCTCTTGGCGTTGCGTTTCCCAAAATGAGACGCAC
GTGTTTTCTTGCATCATCAACACATGCCTTTAGGACTGCAAAAGACATCC
GATGACGGCACGTGGAGCTGGCGGGACTCCCTGGCCGGCTTTACGCCCGG
AGACTTCGACGCGTCCGTGAGTTTTCAGGACTGGGGGGAAGGACTAGACG
CCTCCTCTTCCTACGAGAGCACGGGAGCCTCTTGCCTGGAGATAACCCCT
TACTACCCCAAAGCGTGGAACCCTTTCTCGTGCGAGGTGTGTAGACACAC
AGCGCCGTCGTTGTGCTGTCGTTGTTGTCGTCGTTGTCGTCGTGGTCGTG
GTCGTGGTCGTTGTCGTTTTTGTTGTGTTTTTGTTGTTGTTGTTGCAACA
TCCAGGTTGTGGCCCCGAGGGTTTCTGAGCTTGGGGGGCGTCGTGGAGAC
GTTTTAGGTCAGTGTCTTCATTTGTTATTGACTATATCGTTACATGTTTG
TGCCGGCCAATGGACATGAACTTGAGCGCCTGTTGTCCGGCCGTAGAGTT
AAGTCTTGCCGTGCTATGAGCTGCCTACCCGCGGCCGTACCCACTGTCCT
GCTTTCACTGATAGTGATATTACCTTCGTATTTAGTGTCGACTCGCCAAA
CGTACGAGGAATGCTCATGCTTGGTATTGAGGAACACGGCTGTTTCGCTT
CAATTGGTTTAGACTTCACATTTCGAGCGGCCCTTTTAGGTTCAATCACT
TCAAGGACAGAAATACCTCATGGGTTGGGATGTAGGCCGGGACCGAATAA
AAAAAGCTCGCACCAAGCGCAACCCAAACGTCCGAAGACCTCCCCAAAAC
CTGCATCGAGACAAAGCTACGCTAACCAGCCCTCGACGCACATGAGGAGC
AGCGCTGGACCAAACTTCAGGTTCGGCTAGAGATTTCTTGCCGGTCTCCC
CTTACTCCGCGTCCGTCATGCCTGTGTCCCCTTTCACCCCAAGGTGAACA
AGCAATACGTGTGCGAGAGGCCAGCAGCGCCGGGATCGGGTTCCTCCAGC
CCCCAACAATCGGCTACGACAGGCCCGGAGCTATCCCCTTCACCGGTGGA
CGATGGTGTAGCACGTGGTTCTCAGGGTACACCCGCACCTACCGCCTCCG
CCACAGCCTCGTTCGTCGGATCAGCTTCTTCCGAGGAATTTTCTTCGAAC
TTTCGCACGGAATCGCCCACCGGGTCACCAACGGGGTCTCCGACATCTGC
CCCAACAGCAATGTACAGCCTGGCGGATGGTACCATGGTCGCCAGGGATG
ACGCCAGCTGCGCAGAGAGGCTGGGCGAACATGAACAGTTGTGAGTACAG
CGTGGCGGGGGGCATTGTTTGTGCAGCAACTCCACGGTGGCACGGCCGAC
GCCTAGCGCTGTTTTGATCTTGGAATCGTTGTCTGCATTAGCTCAAAGAT
CTCTCCTTTAGCTCAAAAGTCTTTCTTTTCCTATCTTGAGCATCTCTCTG
ATTCGGGGGTGCAGAAGCTAACCGCTTTGAACAATCTCTACCGTCATCGT
GATGACGCCCGTTTTCTTCGTCAAGTTTTGGAGTTGACGGTACCTGTGAT
GTGCAGAACGACAAAGGAGGGGTTCGAACGAGATGCTTCTGTGGGCTCAG
TAGGGCGGGGGGGGGGGTGTTGTGGTGCGTGGTATTCCAGTTTGCCTCAA
CTTCAAGTCCATGGAGTTTCATGGTGTGGGCACGTCGTCTACGTCCCTGG
GGTTGTCGACAAAGGGAAGATACAAACACACCTCTAACACGTGGGAATCT
TGCGGGGGGGCCCTCATTGTATCACACACCCTTGCGCCGATTCTCGTGAA
AATCCCCGACAAACTGGTGGTGCTACTTCCACGTTCGATTCGTAGGTCAT
TGGCCACATACGACATGAGCGTCTTCAATGATGCCGCCGGTTGTGAGGAA
ACCCTCCTCACGGAAGAGCCGCACTGGTGCAACTCCTTCGAGATCGGGCA
GGAGTGCCGCTCCTGCTGGTTGTCCTGCGACGGGGCTCGCCTGTACTTAG
CGGAATTTTCCTGGTTGCGGGACGACAAGTGAGAGAAATTATTCACTCAC
TCCGCGAGTCGATCTTCACAGCTTGTCTCTGGTCGTACCTCGACAACGTG
TCCGGTAGGAAAGGGTACGTGTTTGATTTAGCTCTCATGAGAACATATTT
TCATCCTCGTTTCCCTTTACGGCGTGGTATCGTCCCTACTGTTGTTTGTT
CTTGTGATTGTTTGGAGCTCATCAAATCCGACTAGAGGAAAAACTGGTTT
TGGTCGCCGTCGGTGGCCTTGTGCGCGATCAAGCGCTGACGAGATGGAAA
AACAGCTTATGTCTTGCTTTTCTACACGCGCGAGAACGTAGACGATGTTG
GGACTTGTTTTTGTTTTGTCTTCACCTCGGGAAGAAGGAGCCGCGGGCCG
AAAGGAAGCACGTTCAGCCCGCACACACCCCCTACAAAATGGCTACCGTC
ACGGCGAACAAGTTCTTATGCCCCCTTGTACGTTCCGCACACCCTTCCGC
GTCCGCCCCCACACACGACCTATGCGGTGTCTGTCATCATGTATTGTCTT
TGAACTTTAGGAACGAGCCGTGTAGCACGCCGTAGTAGTATCTCCTCATT
GTATATTGCAATTGTACATCTACACACGGAACCTCGTGGATCATCAGCTA
GCCGCTGCCGCTCGAACTGTCGTAAGAAATATACCAATATGCACGCCCAG
AGGAAAAACGATATACGTGCTCCATACACATGACCCATGAAAGCTCAACA
CCTGAAGGGAACTTTGATCTGCGTTCCTGTTTGGTGTCGCCATCGCTCTA
TCGAACCTCGCGCAGGATTATATTCTGCCCCGGCGTCGGCTTGTCAGACT
TCGGAGACGACTGTGGCAACGACGACAACAACGGCCACAACGATGATAAC
AGTCGTCCCCGCCACCGAAACCTAAGGGAGACATTTCAGAAATTTGATTC
CCTTTCCCAGGAAACGGCCCCGGCGATTAGAAGTCTATTATCGTCACAGT
TCCGCGTCTTCCTCCGGCGCCCGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:352601..357726-

>mRNA_E-siliculosus-1a_M_contig96.17588.1 ID=mRNA_E-siliculosus-1a_M_contig96.17588.1|Name=mRNA_E-siliculosus-1a_M_contig96.17588.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3234bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:352601..357726- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTACCAAAGCCGGAAAGTGAAGCGTGGTGTAGTGGCAAGCAACACAGT
GGTGCTCGCGGTTGTTCTGGGCTCAGATGTACCAAAGCCGGAAAGTGAAG
CGTGGTGTAGTGGCAAGCAACACAGTGGTGCTCGCGGTTGTTCTGGGCTC
AGTCACAGGTATCCTGGCCGCGTCGACCACTGAAGAATGTGCGACGCTGG
TGCCGATTGAAGACCGAAGGAGGGGGAAAGGGGCGTTTTTCAGCGGCTGT
ACAAGCCGGTCGATGACTACTAGCCGCGGCGGGTGCTGGTCTACGCTCAT
CGAAGAGGAGAGTGGGTGCCAAACGTGCATTGTGCAGTCACAGGTATCCT
GGCCGCGTCGACCACTGAAGAATGTGCGACGCTGGTGCCGATTGAAGACC
GAAGGAGGGGGAAAGGGGCGTTTTTCAGCGGCTGTACAAGCCGGTCGATG
ACTACTAGCCGCGGCGGGTGCTGGTCTACGCTCATCGAAGAGGAGAGTGG
GTGCCAAACGTGCATTGTGCAGGCCACCAGCAGCAGCACAACCGCAACCG
ATGACCCGCCGGCGGCACAGTGGAATTCCTCGGTGTTCAGCACGTTCTTC
GAGATGGAGCTAGACCCTTGCCCCGAATCCGTCTCTGATATATACGGGAC
TCCGCCAGGGGGCGTCGTGTCCTACCAGGAGGTGCTATCGGCCGACTGCC
GTGACAGCGACGACGACAATGACGACAATGACGACAGCGACAGCGTGTGG
CTCGCGTTCGAGAACAGCTGCTACTCCAAGAGCTCATACTTGGACGCGGC
AGTCAACTGGGAGGATGCGGACGCTAGGCCACCAGCAGCAGCACAACCGC
AACCGATGACCCGCCGGCGGCACAGTGGAATTCCTCGGTGTTCAGCACGT
TCTTCGAGATGGAGCTAGACCCTTGCCCCGAATCCGTCTCTGATATATAC
GGGACTCCGCCAGGGGGCGTCGTGTCCTACCAGGAGGTGCTATCGGCCGA
CTGCCGTGACAGCGACGACGACAATGACGACAATGACGACAGCGACAGCG
TGTGGCTCGCGTTCGAGAACAGCTGCTACTCCAAGAGCTCATACTTGGAC
GCGGCAGTCAACTGGGAGGATGCGGACGCTAGGTGTGGGGAGGTGGGTGC
GAGGCTCGTGAGCCTTGAAAGCGAGGCCGAGAATGACTTCGTCACTCACA
ATCTGCTGTGGATTGGTTTCCTTGGCGAGGCGTACACAGGTGTGGGGAGG
TGGGTGCGAGGCTCGTGAGCCTTGAAAGCGAGGCCGAGAATGACTTCGTC
ACTCACAATCTGCTGTGGATTGGTTTCCTTGGCGAGGCGTACACAGGACT
GCAAAAGACATCCGATGACGGCACGTGGAGCTGGCGGGACTCCCTGGCCG
GCTTTACGCCCGGAGACTTCGACGCGTCCGTGAGTTTTCAGGACTGGGGG
GAAGGACTAGACGCCTCCTCTTCCTACGAGAGCACGGGAGCCTCTTGCCT
GGAGATAACCCCTTACTACCCCAAAGCGTGGAACCCTTTCTCGTGCGAGG
ACTGCAAAAGACATCCGATGACGGCACGTGGAGCTGGCGGGACTCCCTGG
CCGGCTTTACGCCCGGAGACTTCGACGCGTCCGTGAGTTTTCAGGACTGG
GGGGAAGGACTAGACGCCTCCTCTTCCTACGAGAGCACGGGAGCCTCTTG
CCTGGAGATAACCCCTTACTACCCCAAAGCGTGGAACCCTTTCTCGTGCG
AGGTGAACAAGCAATACGTGTGCGAGAGGCCAGCAGCGCCGGGATCGGGT
TCCTCCAGCCCCCAACAATCGGCTACGACAGGCCCGGAGCTATCCCCTTC
ACCGGTGGACGATGGTGTAGCACGTGGTTCTCAGGGTACACCCGCACCTA
CCGCCTCCGCCACAGCCTCGTTCGTCGGATCAGCTTCTTCCGAGGAATTT
TCTTCGAACTTTCGCACGGAATCGCCCACCGGGTCACCAACGGGGTCTCC
GACATCTGCCCCAACAGCAATGTACAGCCTGGCGGATGGTACCATGGTCG
CCAGGGATGACGCCAGCTGCGCAGAGAGGCTGGGCGAACATGAACAGTTG
TGAACAAGCAATACGTGTGCGAGAGGCCAGCAGCGCCGGGATCGGGTTCC
TCCAGCCCCCAACAATCGGCTACGACAGGCCCGGAGCTATCCCCTTCACC
GGTGGACGATGGTGTAGCACGTGGTTCTCAGGGTACACCCGCACCTACCG
CCTCCGCCACAGCCTCGTTCGTCGGATCAGCTTCTTCCGAGGAATTTTCT
TCGAACTTTCGCACGGAATCGCCCACCGGGTCACCAACGGGGTCTCCGAC
ATCTGCCCCAACAGCAATGTACAGCCTGGCGGATGGTACCATGGTCGCCA
GGGATGACGCCAGCTGCGCAGAGAGGCTGGGCGAACATGAACAGTTGTCA
TTGGCCACATACGACATGAGCGTCTTCAATGATGCCGCCGGTTGTGAGGA
AACCCTCCTCACGGAAGAGCCGCACTGGTGCAACTCCTTCGAGATCGGGC
AGGAGTGCCGCTCCTGCTGGTTGTCCTGCGACGGGGCTCGCCTGTACTTA
GCGGAATTTTCCTGGTTGCGGGACGACAAGTCATTGGCCACATACGACAT
GAGCGTCTTCAATGATGCCGCCGGTTGTGAGGAAACCCTCCTCACGGAAG
AGCCGCACTGGTGCAACTCCTTCGAGATCGGGCAGGAGTGCCGCTCCTGC
TGGTTGTCCTGCGACGGGGCTCGCCTGTACTTAGCGGAATTTTCCTGGTT
GCGGGACGACAAGATTATATTCTGCCCCGGCGTCGGCTTGTCAGACTTCG
GAGACGACTGTGGCAACGACGACAACAACGGCCACAACGATGATAACAGT
CGTCCCCGCCACCGAAACCTAAGGGAGACATTTCAGAAATTTGATTCCCT
TTCCCAGGAAACGGCCCCGGCGATTAGAAGTCTATTATCGTCACAGTTCC
GCGTCTTCCTCCGGCGCCCGTGAGATTATATTCTGCCCCGGCGTCGGCTT
GTCAGACTTCGGAGACGACTGTGGCAACGACGACAACAACGGCCACAACG
ATGATAACAGTCGTCCCCGCCACCGAAACCTAAGGGAGACATTTCAGAAA
TTTGATTCCCTTTCCCAGGAAACGGCCCCGGCGATTAGAAGTCTATTATC
GTCACAGTTCCGCGTCTTCCTCCGGCGCCCGTGA
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