mRNA_E-siliculosus-1a_M_contig96.17580.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17580.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17580.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: D8LQ95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ95_ECTSI)

HSP 1 Score: 586 bits (1510), Expect = 1.660e-209
Identity = 292/299 (97.66%), Postives = 295/299 (98.66%), Query Frame = 1
Query:    1 MVLGGRLSVATLLLSLSATASGFLVPSFCRGCTVRAWSSAAAADRPPSADAARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTSAADLSPPSSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG 897
            MVLGGRLSVATLLLSL ATASGFL+PSFCRGCT RAW SAAAADRPPSADAARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTSAADLSPPS+RTWPLGV+LYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGG TPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG
Sbjct:    1 MVLGGRLSVATLLLSLPATASGFLIPSFCRGCTARAWCSAAAADRPPSADAARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTSAADLSPPSARTWPLGVILYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGPTPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG 299          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A6V1TMQ8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TMQ8_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 6.520e-13
Identity = 55/212 (25.94%), Postives = 98/212 (46.23%), Query Frame = 1
Query:  250 EEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTSAADLSPPSSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885
            +++ W  LD DE  + +  A     ++    E    Y+  A  +   ++  W  GV+LY LG+++EA  +L  +IR +E  FE+ AT+ERIW  A+  RG      D +  + +L    + E   + +    +F  G   ED + +  +     DY+    + + +LG+  +A     +A+ YI +A   +    DD   H  ++H   R W
Sbjct:   47 DDDVWDQLDDDERQLRRNVATAKELIRMKQAEDALLYFDKAVQIKE-NAFLWQRGVLLYLLGKFDEAHDQLSRNIRHYENVFEQPATEERIWMLASEKRGDLLVVPDQQPFSISLEEEELKESRVVLKKA-ELFLAGEIGED-EVMETIERTKSDYWAC--YGQYYLGVGMEARNQMDKAQKYIRSALEVSPLKEDDAGLHMMQLHGHIRGW 253          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A6P0ZH85_9CYAN (Uncharacterized protein n=2 Tax=unclassified Sphaerospermopsis TaxID=2646443 RepID=A0A6P0ZH85_9CYAN)

HSP 1 Score: 72.4 bits (176), Expect = 4.070e-11
Identity = 53/194 (27.32%), Postives = 90/194 (46.39%), Query Frame = 1
Query:  313 GLACLKAGMLEKGCEYYTSAADLSPP-SSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQ--AAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885
            G+   + G +E+  + + +A  L    +   W  G+  YY  R+ E A + + D+    +  EE      +W+    A + G  EA   +  V         ++P  + R+VY++F G  T +DV  V K+          +F+S ++LGLY++A GN   A+ YI+ A  N Y   D +WY    +H + R W
Sbjct:   32 GMVYFQLGKIEESIQDFDTAETLDAQITPYLWQRGLSYYYAERFTEGAKQFEIDLTVNPQDVEET-----VWRYLCIARLSGVEEANNSLLTVK--------NDPRKIMRSVYDLFAGNCTNDDVLNVGKLAG-----LKGNFYSHLYLGLYYEAEGNFELAKEYIVKAADN-YKIDDYMWYLAV-VHKQVRGW 205          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: UPI001683F6F1 (hypothetical protein n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI001683F6F1)

HSP 1 Score: 72.0 bits (175), Expect = 5.540e-11
Identity = 53/192 (27.60%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  313 GLACLKAGMLEKGCEYYTSAADL-SPPSSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885
            G+   +   +E+  + + +A  L S  +   W  G+  YY  R+ E A + + D+    +  EE      +W+   ++  AR +G  V +   +L P+  ++P  + R+VY++F G  T +DV  V K+G         +F++ ++LGLY ++ GN   A+ YI+ A  N Y   D +WY    +H + R W
Sbjct:   32 GMVYFQLAKIEESIQDFDTAEKLDSRLTPYLWQRGLSYYYAARFAEGAKQFEIDLTVNAQDVEET-----VWR---YLCTARLSG--VTEARNSLLPVK-NDPRKIMRSVYDLFAGNCTTDDVLNVGKLGG-----LKGNFYNHLYLGLYFESEGNLELAQEYIVKAADN-YKIDDYMWYLAV-VHKQVRGW 205          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A8J4BUZ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BUZ0_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.080e-10
Identity = 59/198 (29.80%), Postives = 89/198 (44.95%), Query Frame = 1
Query:  310 AGLACLKAGMLEKGCEYYTSAADLSPPSSR-TWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPIS-EPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVD-FFSEVFLGLYHDAHGNELEAETYILAACGNTYPN-PDDLWYHTPRIHAKARNWTI 891
            +G+   +   +E   E +    +L+P      W  G+ LYYLGRY E A +   D+           T+E IW    ++  A+  G D     A +  L +  +P  + R  Y  FR G  P      AK+ A   D  G D F+  +++GL+H+AHGN  EA+  I+AA    Y     D      R+H + RNW +
Sbjct:  111 SGMNKFRLNQVEASVEDFDRVIELAPQMRPYMWQRGLSLYYLGRYAEGAEQFRVDVAVNPND-----TEESIWT---FLCEAQMVGPDQ----ARMQFLEVGRDPRPVMRAAYECFRTGELP------AKIMAQVSDNGGHDTFYGLLYVGLWHEAHGNATEAKKAIVAAVQTPYARLSGDYMASLARVHCQRRNWEL 290          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A7S3FUV3_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FUV3_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-10
Identity = 57/198 (28.79%), Postives = 93/198 (46.97%), Query Frame = 1
Query:  310 AGLACLKAGMLEKGCEYYTSAADLSPPSS-RTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPIS-EPNALRRTVYNMF--RGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYP-NPDDLWYHTPRIHAKARNWT 888
            +G+     G +E     +  A DL P    R W  G+ LYY G YE+AA +   D+           T+E +W   A++  AR  G+      A    L +  +P  L RTVY++F  +G + P ++ +VA+      D    +F+S +++ L+H++ GNE  A+ Y+L A    Y     D      R+H + R W+
Sbjct:   29 SGMRKFLDGDVEGSVSDFDRAIDLDPSQKPRLWQRGLSLYYAGEYEKAAEQFRVDVSLNPND-----TEEALW---AYLSEARLVGS----AKAKEQFLKVGKDPRPLLRTVYDVFGRQGLSDPSEILEVAESAKSAHD----EFYSLLYVALWHESEGNEGVAKKYMLQAIDTRYALQSGDYMAGLARVHCQVRKWS 210          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A1Z4SDC6_9NOSO (Uncharacterized protein n=2 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A1Z4SDC6_9NOSO)

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-10
Identity = 51/164 (31.10%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  403 WPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIR--GAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKV-GAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885
            W  G+  YY  R+ E A + + D+    +  EE      +W+     R  G +EA   +  V         ++P  + +TVYN++ G  TP+DV  V K+ G  G      +F+S ++LGLY++A  N   A+ YI+ A  N Y   D +WY   ++H K R W
Sbjct:   63 WQRGLSYYYAERFAEGAQQFEIDLTVNAQDVEET-----VWRYLCMARLVGVKEARNSLLTVK--------NDPRRIMQTVYNLYAGNCTPDDVLTVGKLEGDRG------NFYSHLYLGLYYEAENNLDLAQEYIVKAADN-YKIDDYMWY-LAQVHKKLRAW 205          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A6M0EVX6_9CYAN (Uncharacterized protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M0EVX6_9CYAN)

HSP 1 Score: 70.5 bits (171), Expect = 1.900e-10
Identity = 52/194 (26.80%), Postives = 88/194 (45.36%), Query Frame = 1
Query:  313 GLACLKAGMLEKGCEYYTSAADLSPPS-SRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQ--AAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885
            G+A  K   +++    +  A  L+P      W  G+  YY  R+EE A +   D+    +  EE      +W+    A ++G  EA   +  V         ++P ++ R+VY +F G  T EDV  V +      +     F+S +++GL+++A  + + A  YI+ A  N Y   D +W H  R+H   R W
Sbjct:   32 GMANFKLAKIDESIRDFDHAEKLNPKVLPYLWQRGLSYYYAERFEEGARQFQLDLSVNPQDVEET-----VWRYLCIARLKGVAEARNSLLAVK--------NDPRSVMRSVYGLFAGNCTREDVLAVGEK-----ESIRGKFYSNLYIGLHYEAQADSIHAREYIVRAA-NDYQLDDYMW-HLARVHQALRGW 205          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A252EBR8_9NOSO (Uncharacterized protein n=3 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A252EBR8_9NOSO)

HSP 1 Score: 68.9 bits (167), Expect = 6.480e-10
Identity = 54/193 (27.98%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  313 GLACLKAGMLEKGCEYYTSAADLSPP-SSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKV-GAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885
            G+   +   +++  + + +A  L P      W  G+  YY  R+ E A +   D+    +  EE      +W+   ++  AR +G  VE    +L  +  ++P  + R+VY+++ G  TP+DV  V K  G  G      +F+S ++LGLY++A  N   A+ YI+ A  N Y   D +WY   ++H   R W
Sbjct:   32 GMVNFQLAKIDESIQDFDTAEQLDPRLKPYLWQRGLSYYYAERFAEGAQQFKIDLTVNAQDVEET-----VWR---YLCIARLSG--VESARNSLLTVK-NDPRRIMRSVYDLYAGNCTPDDVLNVGKSEGVKG------NFYSHLYLGLYYEAENNLELAQEYIVKAADN-YKIDDYMWY-LAQVHKNLRKW 205          
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A8J4EVV0_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EVV0_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.720e-9
Identity = 52/196 (26.53%), Postives = 81/196 (41.33%), Query Frame = 1
Query:  310 AGLACLKAGMLEKGCEYYTSAADLSPPSSR-TWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQ--AAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPN-PDDLWYHTPRIHAKARNW 885
            +G+   +   +E   E +     L+P      W  G+ LYYLGRY E A +   D+           T+E IW     A + G  +A     +V          +P  + R  Y  FR G  P+ +        G   ++G+     +++GL+H+AHG+  EA+  I AA    Y     D      R+H + RNW
Sbjct:  120 SGMDKFRRNQVEASVEDFDRVVQLAPQMRPYMWQRGLSLYYLGRYAEGAEQFRVDVAVNPND-----TEESIWTFLCEAQMVGPEQARMQFLEVG--------RDPRPVMRAAYECFRTGELPDKIMAQVSDNGGHDTFYGL-----LYVGLWHEAHGDTTEAKKAITAAVQTPYARLSGDYMASLARVHCQRRNW 297          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ95_ECTSI1.660e-20997.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1TMQ8_HETAK6.520e-1325.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6P0ZH85_9CYAN4.070e-1127.32Uncharacterized protein n=2 Tax=unclassified Sphae... [more]
UPI001683F6F15.540e-1127.60hypothetical protein n=1 Tax=Anabaena sphaerica Ta... [more]
A0A8J4BUZ0_9CHLO1.080e-1029.80Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A7S3FUV3_9CHLO1.100e-1028.79Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A1Z4SDC6_9NOSO1.400e-1031.10Uncharacterized protein n=2 Tax=unclassified Nosto... [more]
A0A6M0EVX6_9CYAN1.900e-1026.80Uncharacterized protein n=4 Tax=Cyanobacteria TaxI... [more]
A0A252EBR8_9NOSO6.480e-1027.98Uncharacterized protein n=3 Tax=unclassified Nosto... [more]
A0A8J4EVV0_9CHLO1.720e-926.53Uncharacterized protein n=1 Tax=Volvox africanus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:254024..257367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size900
Model size1203
Exons6
Ec32 orthologEc-26_005640.1
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelfabids
EggNOG OGs28IPX@1,2QR10@2759,37K9U@33090,3G9QV@35493,4JI4E@91835
Seed eggNOG ortholog4006.Lus10015207
Seed ortholog evalue2.5e-12
Seed ortholog score79.7
Taxonomic scopeViridiplantae
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936532.6767552-UTR-E-siliculosus-1a_M_contig96:254023..2543261622936532.6767552-UTR-E-siliculosus-1a_M_contig96:254023..254326Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 254024..254326 -
1696251120.0599744-UTR-E-siliculosus-1a_M_contig96:254023..2543261696251120.0599744-UTR-E-siliculosus-1a_M_contig96:254023..254326Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 254024..254326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936532.6946254-CDS-E-siliculosus-1a_M_contig96:254326..2544461622936532.6946254-CDS-E-siliculosus-1a_M_contig96:254326..254446Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 254327..254446 -
1696251120.0739412-CDS-E-siliculosus-1a_M_contig96:254326..2544461696251120.0739412-CDS-E-siliculosus-1a_M_contig96:254326..254446Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 254327..254446 -
1622936532.7133029-CDS-E-siliculosus-1a_M_contig96:254662..2547971622936532.7133029-CDS-E-siliculosus-1a_M_contig96:254662..254797Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 254663..254797 -
1696251120.0880406-CDS-E-siliculosus-1a_M_contig96:254662..2547971696251120.0880406-CDS-E-siliculosus-1a_M_contig96:254662..254797Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 254663..254797 -
1622936532.7256272-CDS-E-siliculosus-1a_M_contig96:255144..2552611622936532.7256272-CDS-E-siliculosus-1a_M_contig96:255144..255261Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 255145..255261 -
1696251120.0990825-CDS-E-siliculosus-1a_M_contig96:255144..2552611696251120.0990825-CDS-E-siliculosus-1a_M_contig96:255144..255261Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 255145..255261 -
1622936532.737763-CDS-E-siliculosus-1a_M_contig96:255460..2556051622936532.737763-CDS-E-siliculosus-1a_M_contig96:255460..255605Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 255461..255605 -
1696251120.1099026-CDS-E-siliculosus-1a_M_contig96:255460..2556051696251120.1099026-CDS-E-siliculosus-1a_M_contig96:255460..255605Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 255461..255605 -
1622936532.75926-CDS-E-siliculosus-1a_M_contig96:256097..2563561622936532.75926-CDS-E-siliculosus-1a_M_contig96:256097..256356Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 256098..256356 -
1696251120.1207683-CDS-E-siliculosus-1a_M_contig96:256097..2563561696251120.1207683-CDS-E-siliculosus-1a_M_contig96:256097..256356Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 256098..256356 -
1622936532.7738771-CDS-E-siliculosus-1a_M_contig96:257243..2573671622936532.7738771-CDS-E-siliculosus-1a_M_contig96:257243..257367Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 257244..257367 -
1696251120.1312127-CDS-E-siliculosus-1a_M_contig96:257243..2573671696251120.1312127-CDS-E-siliculosus-1a_M_contig96:257243..257367Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 257244..257367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17580.1prot_E-siliculosus-1a_M_contig96.17580.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 254327..257367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17580.1

>prot_E-siliculosus-1a_M_contig96.17580.1 ID=prot_E-siliculosus-1a_M_contig96.17580.1|Name=mRNA_E-siliculosus-1a_M_contig96.17580.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=300bp
MVLGGRLSVATLLLSLSATASGFLVPSFCRGCTVRAWSSAAAADRPPSAD
AARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEK
KCAAGLACLKAGMLEKGCEYYTSAADLSPPSSRTWPLGVVLYYLGRYEEA
AVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPP
LPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFL
GLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG*
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mRNA from alignment at E-siliculosus-1a_M_contig96:254024..257367-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17580.1 ID=mRNA_E-siliculosus-1a_M_contig96.17580.1|Name=mRNA_E-siliculosus-1a_M_contig96.17580.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3344bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:254024..257367- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCTTGGGTGGGAGGCTGTCCGTAGCAACCTTGTTGTTGTCGCTCTC GGCGACAGCATCAGGGTTCCTAGTTCCGTCGTTCTGCCGCGGATGCACGG TGCGAGCTTGGTCCTCAGCAGCAGGTAGACACCATTGCACTACTGCTGCA GTACTTGTAGTCTACCGCCCTTACCGTGACTGAGATGCACCCATGAAGAT ACCACACCTCCTCTATAACTAACGCAACGCTGAGTGGTGGTAGTTTTTAC GGCACAAAATGGGTCCGAAACTCAAAACAATACCGGATGAAGTACATAGC ATATGCATGGATGAAGTAAACAGCCGCATCATGCGCAAACAGCCGATGGG TTACAGATGCCACCGTCTGCCGCCCATGGTGCCCGAGGTGAGCGTTAGTG TTGGTATGCAGAAGCGAGCGAGCATGGTTATGATTGGGGCATCGTGGGGG TTGTGCTTGATGTTGGAATCTGCGTTGATACACGTGCCTGTGTTGGCGAC AGCTGAAGGAACATTAGATATGTAGATATTTCCCCAAGCAAGCCCAAGCG CAAATAGATGTGTGACTACTGTTGGAATCTGCATACACGTGCCTGTGTTG GCGACAGCTGAAGGAACATTAGATAGATATTTCCCCAAGCAAGCCCAAGC GCAAATAGATGTGTGACTACTACCGCTTACAGCAGTACCAGCCCTGATCA GCGTGGTGCATTTTTGGTGTTCCAAAGATGCCCCATGCAGTGGTGTGCTT AACTCTGCAACAGGTGATTTGTTTTTTTCAAAACCGTTCGAACCTGTTCA CGCAGGCGAGAACGATCGAGCACTAAACGCTCTTGAAATAACCTGCAAGT CTGTACCTCCCATGCGGGCTGTCACCATTCGAGTAACACAGGCGGCGTCG CTCGTCCGCACACGCGTAACCACAAGCTGTACGTACTGACGCCCCCAGAC ATAGATGACCTACATGCCTCCATGAGCTGTCCTTATGTGCATTAAACCGA CTGCTGTGCAGCAGCGGATCGACCTCCCTCTGCGGATGCGGCGCGACGAA GGAGTCGACTGCCCTTGAAAAAGGAGGACCTCCCGGACGAGACGCTTCGG CAGATGGCGGACGCTGGGAGAGCGCTCAAGGAGCTCGAGGAAGAGTACTG GAAGTCCCTCGACCCCGACGAGATCGCTATCGAGAAAAAGTGCGCGGCGG GTCTCGCGTGCCTGAAGGCTGGGATGCTCGAGAAGGGCTGCGAGTACTAC ACGTCCGCAGCCGATTTAAGGTTTGCGTGTCGACAACGGCCCCGTAAGGG CAGGGGGAATCATTGTGGTGTGAGAGGTGAAATCTTTCAGCTTGGCATGT TCTTGCCCGCTGGGTATGCAATCATGTAGATCTCTATCAACAGTACGCAC ACACGAGTGTTCTGCTTCCACCGACTCTAACGTGGCTTCCCGTGTGTTCA GGCCCGTGGTTTGTTGAAGGTGGACGATTCGTATGGCTGTGACGCCAACA ACGATGTTTTAGGAAAATTTCGGACGCGACGGGAGGCGCACTGTATGTGA CATACGGTACTAAAAGTAGTCGCAAAGCCTTTTGACACTATTGAAATGTT GACAATATTGAAATTTGTATGTGTAGCGACTTTTCGCCTCATGAGCCTCG ACTTCTCAACCCCCATTCTGTTGCTCCCCCTCCCTCCTTCACATTCATGC TCAAGGACGTACCACCGACGGAAATCCTGTCTGCTCCCTCCCCCCGCGTG TCCCCTTCACAGCCCACCGTCCTCGCGCACTTGGCCATTGGGAGTGGTCC TTTATTACCTCGGGCGATACGAAGAAGCAGCAGTAAGGCTGGACACAGAC ATCAGATCCTTCGAGAAGCAATTCGAGGAATGCGCAACGGACGAACGAAT CTGGCAGGTGATTTGGACATCCACCTACATACTTCTCGATCGCAAATGCT TGTCCGGACATTGAACTTCCCTTTTAATTCCCTAGGGTCCCACTACTCCA CTCTGAACATTTGCATAAACTGAATACAGACAGCGCCCTCACATTGCGTA AGATATTGAGAGTTCAAATTGTTGGAGCTGGTCGACTCGTTCTTTTTCCT TTGAAGGCGGCGGCATGGATCCGAGGAGCACGGGAGGCAGGGGCAGATGT GGAGCAGGTCGCGGCGGCCTTGCCCCCGCTCCCAATTTCGGAGCCGAACG CGCTCCGCAGGACCGTGTACAACGTGAGATTTTGTTTTTGGTGTAGTCGT TGCGTAACGTGTTTGGTTTCGTATGGCTATTTTCCTCGTCTTGTTGCCCA GTTTCTTTTTAACTGCGGTACCAGTACGTAGGAACCGTCAGTATCGCTTG GGCGCACACCGTATTTGATGTGCCTATTTTGCCGTCGCCCTTGAGACCAC GCTGCTTCCTTCTTGTTGGAAGTCTGTTGGTTCACGTACGTTGTTGTAAA ACATGCTGATGGGCATGATGGGGCATCGAAATGTTTACATGGGGAGCCGT TTCAGCTGCGCTTCTCCGTTCTTGGTATCGATTGTTGATGCTGCATATGC ATCTGCGCGCTTTTTTGCAGATGTTTCGCGGGGGAGCAACCCCTGAAGAC GTCCAACAGGTTGCCAAAGTGGGCGCTGGCGGAATCGACTACTTCGGCGT GGATTTTTTCTCCGAGGTGTTCTTGGGGCTTTATCACGATGCGCACGGGA ACGAGGTGAGATGACAGACGATACCCGTGGTGTTTTAATAGCTCTTTTGA TTCTGCATTTCATGTGCCGCCAATCAAAACGACCTCGTTGCCTGACAGGC GTAAAATAAAAAACCGTTGCCACGTCGACCTGGCGAACGCGAAACGCTCT AGAAGCCAACCCTCTTTCTCCTGCACCCGTTTGTTGCTCCCTCGCTCGTG CTCACCAATGGCATCATCTAGCTCGAAGCGGAGACGTACATCCTGGCGGC GTGCGGAAACACGTACCCTAACCCCGACGACCTGTGGTACCACACCCCCA GGATACATGCCAAGGCTCGAAATTGGACGATTCCAGGGTAGCAAGCACTA TAGGCGTAGAACATAGCTTTTAGTACAGTGTTTAGTCTGCATGGGGTGGT AGCTTTCCTGATCTAGAAAAGGTCGCCGAACTAGATGATTCTCTTTGTCT GCGGTTGAATGTGCACCAAGTTTGTTTGCCTGAGACCCGGAGTGACTGAC GCGGGAACAGAGAGATTTTGCCAGACAAAGCGCATCGTAATGTTGATATC ACCAAAGTATATCGGAAGTCTGAACCCAAGCCAAGTTCAGCATTACAGAA CAGGCACCAATGCAAATATGCCGCAGCAACTAAACAGATCGAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:254024..257367-

>mRNA_E-siliculosus-1a_M_contig96.17580.1 ID=mRNA_E-siliculosus-1a_M_contig96.17580.1|Name=mRNA_E-siliculosus-1a_M_contig96.17580.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1800bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:254024..257367- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCTTGGGTGGGAGGCTGTCCGTAGCAACCTTGTTGTTGTCGCTCTC
GGCGACAGCATCAGGGTTCCTAGTTCCGTCGTTCTGCCGCGGATGCACGG
TGCGAGCTTGGTCCTCAGCAGCAGATGGTCTTGGGTGGGAGGCTGTCCGT
AGCAACCTTGTTGTTGTCGCTCTCGGCGACAGCATCAGGGTTCCTAGTTC
CGTCGTTCTGCCGCGGATGCACGGTGCGAGCTTGGTCCTCAGCAGCAGCA
GCGGATCGACCTCCCTCTGCGGATGCGGCGCGACGAAGGAGTCGACTGCC
CTTGAAAAAGGAGGACCTCCCGGACGAGACGCTTCGGCAGATGGCGGACG
CTGGGAGAGCGCTCAAGGAGCTCGAGGAAGAGTACTGGAAGTCCCTCGAC
CCCGACGAGATCGCTATCGAGAAAAAGTGCGCGGCGGGTCTCGCGTGCCT
GAAGGCTGGGATGCTCGAGAAGGGCTGCGAGTACTACACGTCCGCAGCCG
ATTTAAGCAGCGGATCGACCTCCCTCTGCGGATGCGGCGCGACGAAGGAG
TCGACTGCCCTTGAAAAAGGAGGACCTCCCGGACGAGACGCTTCGGCAGA
TGGCGGACGCTGGGAGAGCGCTCAAGGAGCTCGAGGAAGAGTACTGGAAG
TCCCTCGACCCCGACGAGATCGCTATCGAGAAAAAGTGCGCGGCGGGTCT
CGCGTGCCTGAAGGCTGGGATGCTCGAGAAGGGCTGCGAGTACTACACGT
CCGCAGCCGATTTAAGCCCACCGTCCTCGCGCACTTGGCCATTGGGAGTG
GTCCTTTATTACCTCGGGCGATACGAAGAAGCAGCAGTAAGGCTGGACAC
AGACATCAGATCCTTCGAGAAGCAATTCGAGGAATGCGCAACGGACGAAC
GAATCTGGCAGCCCACCGTCCTCGCGCACTTGGCCATTGGGAGTGGTCCT
TTATTACCTCGGGCGATACGAAGAAGCAGCAGTAAGGCTGGACACAGACA
TCAGATCCTTCGAGAAGCAATTCGAGGAATGCGCAACGGACGAACGAATC
TGGCAGGCGGCGGCATGGATCCGAGGAGCACGGGAGGCAGGGGCAGATGT
GGAGCAGGTCGCGGCGGCCTTGCCCCCGCTCCCAATTTCGGAGCCGAACG
CGCTCCGCAGGACCGTGTACAACGCGGCGGCATGGATCCGAGGAGCACGG
GAGGCAGGGGCAGATGTGGAGCAGGTCGCGGCGGCCTTGCCCCCGCTCCC
AATTTCGGAGCCGAACGCGCTCCGCAGGACCGTGTACAACATGTTTCGCG
GGGGAGCAACCCCTGAAGACGTCCAACAGGTTGCCAAAGTGGGCGCTGGC
GGAATCGACTACTTCGGCGTGGATTTTTTCTCCGAGGTGTTCTTGGGGCT
TTATCACGATGCGCACGGGAACGAGATGTTTCGCGGGGGAGCAACCCCTG
AAGACGTCCAACAGGTTGCCAAAGTGGGCGCTGGCGGAATCGACTACTTC
GGCGTGGATTTTTTCTCCGAGGTGTTCTTGGGGCTTTATCACGATGCGCA
CGGGAACGAGCTCGAAGCGGAGACGTACATCCTGGCGGCGTGCGGAAACA
CGTACCCTAACCCCGACGACCTGTGGTACCACACCCCCAGGATACATGCC
AAGGCTCGAAATTGGACGATTCCAGGGTAGCTCGAAGCGGAGACGTACAT
CCTGGCGGCGTGCGGAAACACGTACCCTAACCCCGACGACCTGTGGTACC
ACACCCCCAGGATACATGCCAAGGCTCGAAATTGGACGATTCCAGGGTAG
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