mRNA_E-siliculosus-1a_M_contig96.17562.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17562.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17562.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17562.1 vs. uniprot
Match: D8LQA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA9_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.460e-84
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 1 
Query:    1 MLNPMLPDEVAVKQVPKQRFSGVKELFAFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGIFREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLARSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 426
            MLNPMLPDEVAVKQVPKQRFSGVKELF FRHFQGIVLARRLHFVGQVWNVVWSTLVLFGI REGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLA+SQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV
Sbjct:    1 MLNPMLPDEVAVKQVPKQRFSGVKELFVFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGILREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 142
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17562.1 vs. uniprot
Match: A0A6H5L548_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L548_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 7.710e-76
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:    1 MLNPMLPDEVAVKQVPKQRFSGVKELFAFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGIFREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLARSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 426
            MLNPMLPDEVAVKQVP+Q F GVKELFAFRHFQGIVLARRLH+V QVWNVVWSTLVL  +FREG  L IIVAII+YPIFVFYMACFLRLMSEL VSVLLLPSLLA+SQGNGGRGAVAEPVGVGDADLAAYGVSGVD AGTIV
Sbjct:    1 MLNPMLPDEVAVKQVPRQHFYGVKELFAFRHFQGIVLARRLHYVAQVWNVVWSTLVLSTVFREGNPLAIIVAIIIYPIFVFYMACFLRLMSELTVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDGAGTIV 142
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQA9_ECTSI1.460e-8497.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L548_9PHAE7.710e-7689.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:132126..136513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size429
Model size1390
Exons2
Ec32 orthologEc-26_005480.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17562.1prot_E-siliculosus-1a_M_contig96.17562.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 132126..135552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.1656363-CDS-E-siliculosus-1a_M_contig96:132125..1322181622936529.1656363-CDS-E-siliculosus-1a_M_contig96:132125..132218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 132126..132218 +
1696251118.3338854-CDS-E-siliculosus-1a_M_contig96:132125..1322181696251118.3338854-CDS-E-siliculosus-1a_M_contig96:132125..132218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 132126..132218 +
1622936529.1935375-CDS-E-siliculosus-1a_M_contig96:135216..1355521622936529.1935375-CDS-E-siliculosus-1a_M_contig96:135216..135552Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 135217..135552 +
1696251118.3449407-CDS-E-siliculosus-1a_M_contig96:135216..1355521696251118.3449407-CDS-E-siliculosus-1a_M_contig96:135216..135552Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 135217..135552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936529.2117908-UTR-E-siliculosus-1a_M_contig96:135552..1365131622936529.2117908-UTR-E-siliculosus-1a_M_contig96:135552..136513Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 135553..136513 +
1696251118.3581223-UTR-E-siliculosus-1a_M_contig96:135552..1365131696251118.3581223-UTR-E-siliculosus-1a_M_contig96:135552..136513Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 135553..136513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17562.1

>prot_E-siliculosus-1a_M_contig96.17562.1 ID=prot_E-siliculosus-1a_M_contig96.17562.1|Name=mRNA_E-siliculosus-1a_M_contig96.17562.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=143bp
MLNPMLPDEVAVKQVPKQRFSGVKELFAFRHFQGIVLARRLHFVGQVWNV
VWSTLVLFGIFREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLL
PSLLARSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV*
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mRNA from alignment at E-siliculosus-1a_M_contig96:132126..136513+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17562.1 ID=mRNA_E-siliculosus-1a_M_contig96.17562.1|Name=mRNA_E-siliculosus-1a_M_contig96.17562.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4388bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:132126..136513+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTGAACCCCATGCTACCCGATGAAGTGGCTGTGAAGCAGGTCCCGAA
GCAGCGCTTCTCTGGCGTGAAGGAGCTGTTTGCCTTTCGACACGTGAGTC
AACGGAGCTGGTCGCCCCGTAGCTGCCGTCCTCCCTGCGTAACTGCTGTG
CTGTTCTGCAGAGGCCCAAAACTGTACCGCAGTACTAGCACGTTGTTCAT
AACTAAATATCGCGTATATATACGGCAATAGTGATGTAAAGAGAAGCGGT
CTACTATTCGGCCGTGTGGCATGTGGGTTTAACTCGAAATCTCCCCCGAC
AACCGGGCAAATGTATCATTTTGCAACACAGAACAGTTAGTTAGCTCCTT
CTTTACAGCAGCCGAACATCCGCAAATTCTCAGATACCGCAAGAGGCGGA
GAGAGGGCACCCCCCTTGACCGACGTTCAAAAGTCCATTACTCCACAACC
AAGCTTCGCCAATACCAACAATGGTGGTGTTGGAAACATCTCGTCGAGGG
CTTTCCGTAGTCGTATTTGGGCTCTTTCCACACCCGTTTGGTTGTGGAGC
AACCGAGCTTTGAAGGTCGATCAAGGGGAGGTGCCAGCTCTCCCCCCTCT
TGCGGTGCTCTTATGTCACCCATCCGCCCACCCACCCGCACTCGGCAACA
AGCCCTGGTGGGCTATACCTAAGGCAGCGGACAAATATGTGGGCGAGTTG
GTCGGCGGTTGGCAGACGGTGTGTTCGTGTTGCCAAACTGCGCTCTTCTT
GTCCGTGTCCCGCGAAAGGAGTTTATTACCTAACGCGGCGTGCACAGGAA
GGAGAAAATGGCATAGCTCGGAGGCAGTCGAAACCGCTGTTCGTTCTTGC
AAGACAAAAGAAAATTTACGCTATCCCATATACACAACGGGGAGAGTCAA
CCGCAAGAGAATGACAACACGGTGAAACGTCTTGTTTTAACAAGCTCAAG
GTTATTTTTGCAACAGCTCTCGCTGTAGTAGTGATGCCCCTTTTTCTAGC
AAATACGAAGACAGTGTTCCCGAAAGGAAAACCGTTATCATTGATATCTG
ACAACGTTAATGAAAATTCTTCACGATGTGACAGATGTACTCGACTGAGA
CGTGGTTGAAGGTATGCAGCCGAGTTCGCTATTTCAAAAGTATTATTGTA
AAACTACTTGGGCCGCTGCTAACTACTAGCGATTGGTTCGAGTCGATTTT
CTTCGCGGACACACGACGAGTGATGTGGTGGCGATCCAAATTCTAGCCGC
CGACACGGATGTCATTTTTTATCGCGTAACGAAATATTCGATAACTCGGT
CTCGTTGTGTCTATAATCACCAAATGTTTCGCATGAAGCTGGTCACCCAG
AGAGCTGAACTGGCTCAGCCGCAGTACGTTGAGACGGGATCCGGAGGAAA
CCTTCTCTTCTTTGGTATATTTGATATCGCTTTTTTGTACAGGCTGCAAC
GCTGGTAGTAACCGCATCTTTCCCTTTCCACCCCACGTCCCTGCCCCACC
GTCCATACGACCATGCACAAGAAGTGCGGTGATGTTGGATGGGGAAATTT
CGAAGTACGTGGATATACTCCAAGGAGTCGCACAGGGCTGTACGATGTCA
CCCACTCTTTTTAAGATTTACATCAACGATTTGATCAGGGCGGTTGAAGC
AGTAGGACAGGGAGTCCAAGTAGGGGGAAAGAGTGTGTCCGGACTGATGT
TTGCAGATGATTTCGTGGGGGTATCCGACACACCAGAAGGGTTGCAGGAA
CAAATAGATGCGGCGGTAGGATACACCCGAAAATGGAGACTGTCGGCGAA
CGTAGGAAAATGCGCTGTAGTGGTCTGTAACGAAGACAAGAAAAATCCCG
TAGAATTCAAATGGAAATGGGGGGAGGAAGAACTACCGGTAGTAGACAAG
TATACGTACCTGGGAGTAGAGATTTCGAAGGAGTGCTCATGGGACGCACA
CATAGCAAAGTTGATTGGGAAGGGTAAAGCTCAGATAGGCAAGATGGACG
AGATCCTTACGGACCCACACCTAGACACTAGGATTAAGAGGTGTATTCTC
TTGAATGTGATTGTACCTAAGCTAGAGTATGCAGGAGAGGTATGGGAAGG
TAACGTAAAGGCCGTCAAGCAGCTGGAAACGGTGCAGATGGCAGCGGCCA
AGAAAATACTAGGATGTTCGAGTACAACGAGCAACACTGTATTGAGAGCA
GAACTGGGAATGTACTCTCTTAAAACAAAGAGAGACATGCAGAAGTTGAA
TTGGCAGTACAAGGTAAGTAGAATGTCGGACGATAGACTACCAGCCATGG
TTGACAAGGCAGCTTGGGGAAAAGCGACCCCAGGGAAGAAGGGAATCAGA
TGGGACAAGGTGGTAGAGAAGGTTTGGAAGGAGATAGGAGACGAGGAGGA
GACGTTGGACACGGAAGGGTTCGGGGGGTTCAAGACGACAGTCAAGGAGA
TGCTAGAAAGTAGGGAGGAGGCAACCCTTCGGAAGAAGGTACGAAGCGAA
GACCACTTGGAGATATACGGGAAGTTGAAAGAAGGGATAGGGATGAAGAC
GTACTTGGACGGCCCCATGGACTACGCGAAAAAGCTGAAATTGCAATTTC
GAGTAGGCGATCTGGACTTGCCAGAACGAAGGAAGAGGTATACCAGCCGT
AGGAGAGAGGAAGAGGAGGATAGACACACATGTCCATGTGGCAAATCGGA
GGAGAGTAGACCCCACATCGTTGGGGAGTGTGAGTTGTACAGGAAGGAAA
GAGAGGGTCTCGAGGAGGACATGAGAGAGAGAGGGTGTGACATGGACAAG
TTTGGTAAACTAGACAATAGCGAAAAAACGATCGCGATCATTGGGGATAG
ATGGTGGGCACAAGAGGCCGTAGAGGACGGGGACAAGATGTGCAAGAAAT
TTTTATGTAGTTTGTGGCAGAAACGTAAAGAGCTCCCAAATGTTGGTGGT
GTCTCTAGTAGGGGTAGGAACGGTGCTCCGTCTCGAAAGGGACGCGTGGT
CAATGGTCAAATGACTACGGCAAGCAACAAATGAGTACGCCCCCGCGCGC
GCTACTCTTTTAATGCTGTTCTTGTTATTATTTTTTCGCAGTTCCAAGGC
ATTGTTCTGGCGCGTAGATTGCACTTCGTCGGTCAGGTGTGGAACGTGGT
GTGGTCGACGCTGGTGCTTTTCGGGATCTTCAGGGAGGGAACCGCGCTCG
GCATCATAGTCGCGATCATCGTTTACCCCATCTTCGTCTTCTACATGGCC
TGCTTCCTCCGGCTCATGTCCGAGCTGGCCGTGTCCGTGCTGCTCTTGCC
GAGTCTCCTTGCTAGGAGCCAAGGAAACGGAGGGAGAGGGGCGGTGGCAG
AGCCTGTCGGCGTAGGCGATGCTGACTTGGCGGCGTACGGTGTTTCTGGT
GTTGACGACGCTGGCACGATAGTATGACACCGGGAAAGACATGTAGGAAG
GCCCCGTAACCGTGTCGGAGTTTGTATGAATAGGGGCCCCGTGGCATCAT
CCTTTTTCTCGGCGATGGTTGTTGCGTCCAGGCGACGCCATGCTCGCCTG
CTACAGGCAGTGGTGGTGACACGATGCAGCTTTGTGCCTCCACAGCAGTA
GGTAGCGAAATGCGTTCGGTGGGTGGGGCTGCTTCTCGTGAAGTGTTGGC
TCTAGGGTACCCAATCTGTGTTTACTTCGCAAGTCTATCGGTCAAAGCCG
GCATTTCGCCGATGATGCTGAATATAAGCTTCGGCCATTCATCTGTTCCT
GGTGGGACTGGCACTGCTGGCGGTACGTATGTTCACAGATCACAGCAGCA
TCGGCCTTCTTGCGCCCTCGTGCTCGCGGGAGGGGGAAACCGTGTCGCAG
TATTCTACGCAGGTTTTTCTGAGTAAATGTACCTTCCGGACAGAGTATAG
AATCGGGGTTAGGGCTTGGGTTTGCGTGCCCCCTGCCTGTTCTTTTTTCG
TAGTAAACAAACTTTTTTTGCGTATGCAGTCCAGCCGCCGTGTTGCTTGT
TATGGCTGCGTTTCTCTGGTCTTGGTGATGCCAGCTAGTAGCTTCCTTCT
CTTGTTGATGGATACTACGGCGGTTTGTTCTGTTTGTTCTGCCAAGTTTT
GGGTGAACTTGCACTTTATGACCCTAGAAGTAGTCTTCTTGCTCTGGCGA
AAGAGCAGGGAAGAAGCGGTACTGGACAGAGTTCGGAACGAATTCTCCAA
AACATTTGTGGCACGCAGTTCGCTGATTGGTAAAAAAAAACTGTGAAGAC
GGCAAACACGAATGAGTATCTACGATACGATGAAAAGTTTTCCTGAGGTG
GTGCCGCTCGTGCTGGCGTAGACCCTCGCAACACCGCGTTACGCTTACTT
GCGTTCAAGACGATCTACAGAAGGTTTCATGATATGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:132126..136513+

>mRNA_E-siliculosus-1a_M_contig96.17562.1 ID=mRNA_E-siliculosus-1a_M_contig96.17562.1|Name=mRNA_E-siliculosus-1a_M_contig96.17562.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=858bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:132126..136513+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTGAACCCCATGCTACCCGATGAAGTGGCTGTGAAGCAGGTCCCGAA
GCAGCGCTTCTCTGGCGTGAAGGAGCTGTTTGCCTTTCGACACATGTTGA
ACCCCATGCTACCCGATGAAGTGGCTGTGAAGCAGGTCCCGAAGCAGCGC
TTCTCTGGCGTGAAGGAGCTGTTTGCCTTTCGACACTTCCAAGGCATTGT
TCTGGCGCGTAGATTGCACTTCGTCGGTCAGGTGTGGAACGTGGTGTGGT
CGACGCTGGTGCTTTTCGGGATCTTCAGGGAGGGAACCGCGCTCGGCATC
ATAGTCGCGATCATCGTTTACCCCATCTTCGTCTTCTACATGGCCTGCTT
CCTCCGGCTCATGTCCGAGCTGGCCGTGTCCGTGCTGCTCTTGCCGAGTC
TCCTTGCTAGGAGCCAAGGAAACGGAGGGAGAGGGGCGGTGGCAGAGCCT
GTCGGCGTAGGCGATGCTGACTTGGCGGCGTACGGTGTTTCTGGTGTTGA
CGACGCTGGCACGATAGTATGATTCCAAGGCATTGTTCTGGCGCGTAGAT
TGCACTTCGTCGGTCAGGTGTGGAACGTGGTGTGGTCGACGCTGGTGCTT
TTCGGGATCTTCAGGGAGGGAACCGCGCTCGGCATCATAGTCGCGATCAT
CGTTTACCCCATCTTCGTCTTCTACATGGCCTGCTTCCTCCGGCTCATGT
CCGAGCTGGCCGTGTCCGTGCTGCTCTTGCCGAGTCTCCTTGCTAGGAGC
CAAGGAAACGGAGGGAGAGGGGCGGTGGCAGAGCCTGTCGGCGTAGGCGA
TGCTGACTTGGCGGCGTACGGTGTTTCTGGTGTTGACGACGCTGGCACGA
TAGTATGA
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