mRNA_E-siliculosus-1a_M_contig95.17473.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17473.1 vs. uniprot
Match: D7G139_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G139_ECTSI) HSP 1 Score: 523 bits (1346), Expect = 1.230e-177 Identity = 374/392 (95.41%), Postives = 374/392 (95.41%), Query Frame = 1
Query: 1 MNGRGPMPCRFGVDCHRKDCWYAHPAGRSIDAGGXXXXXXXXXXYGAMPNGSNGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNECRYGFQCKREDCHFSHPFGRAIDGDGXXXXXXXXXXXXXRRPALNRGTSNNSVGSVTRGMSELSFGSYPPANATDDEQDLRDTWFPKARDCTCCKGFVYGCTADICDSMGQCTCSIEEADLDGSSDVASNISRTDSPHLGMVSNGSPMGPGEGWTQPPQPPTEXXXXXXXXXXXXXXXXXXX-RPSAGRGAGGGPECRYGTGCKRANCSFGHPRGRKMDSDGVTFGDFGGXXXXXXXXXXXXXXXXXXXXXRGAGARSTAQQDLMDTWYPDCRECSCCKGF 1173
MNGRGPMPCRFGVDCHRKDCWYAHPAGRSIDAGGXXXXXXXXXXYGAMPNGSNGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NECRYGFQCKREDCHFSHPFGRAIDGDGXXXXXXXXX RRPALNRGTSNNS SVTRGMSELSFGSYPPANATDDEQDLRDTWFPKARDCTCCKGFVYGCTADICDSMGQCTCSIEEADLDGSSDVASNISRTDSPHLGM SNGSPMGPGEGWTQPPQPPT XXXXXXXXXXXXXXXXXXX RPSAGRGAGGGPECRYGTGCKRANCSFGHPRGRKMDSDGVTFGDFGGXXXXXXXXXXXXXXXX RGAGARSTAQQDLMDTWYPDCRECSCCK
Sbjct: 1 MNGRGPMPCRFGVDCHRKDCWYAHPAGRSIDAGGXXXXXXXXXXYGAMPNGSNGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NECRYGFQCKREDCHFSHPFGRAIDGDGXXXXXXXXX----RRPALNRGTSNNSAVSVTRGMSELSFGSYPPANATDDEQDLRDTWFPKARDCTCCKGFVYGCTADICDSMGQCTCSIEEADLDGSSDVASNISRTDSPHLGMASNGSPMGPGEGWTQPPQPPTXXXXXXXXXXXXXXXXXXXXXRPSAGRGAGGGPECRYGTGCKRANCSFGHPRGRKMDSDGVTFGDFGGXXXXXXXXXXXXXXXX-----RGAGARSTAQQDLMDTWYPDCRECSCCKSL 381
BLAST of mRNA_E-siliculosus-1a_M_contig95.17473.1 vs. uniprot
Match: A0A836CHD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD1_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.920e-23 Identity = 78/240 (32.50%), Postives = 103/240 (42.92%), Query Frame = 1
Query: 10 RGPMPCRFGVDCHRKDCWYAHPAGRSID--AGGXXXXXXXXXXYGA--------MPNGSNGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNECRYGFQCKREDCHFSHPFGRAIDGDGXXXXXXXXXXXXXRRPALNRGTSNNSVGSVTRGMSELSFGSYPPANATDDEQDLRDTWFPKARDCTCCKGFVYGCTADICDSMGQCTCSIEEADLD 699
+G CRF C R+DC++AHP GR ID +GG G M NG+ G CR+ + C+R DC+F+HP GRAID G XXXXXXXXXXX A + +Q+L DTWFP++RDCTCC+GFVYGC DIC ++G+CTC++EE+D++
Sbjct: 2 QGRQVCRFDTACSRQDCYFAHPNGRMIDGSSGGNGMVMVMPMHAGGGGMGAPGGMANGTGGGGSQ---------------------------------------------------KPCRFAWDCRRPDCYFAHPTGRAIDAAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXMAAAEQDQELADTWFPRSRDCTCCRGFVYGCAGDICAALGKCTCAVEESDME 186
BLAST of mRNA_E-siliculosus-1a_M_contig95.17473.1 vs. uniprot
Match: A0A7S0MWD6_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MWD6_9CHLO) HSP 1 Score: 97.4 bits (241), Expect = 9.810e-18 Identity = 64/223 (28.70%), Postives = 80/223 (35.87%), Query Frame = 1
Query: 10 RGPMPCRFGVDCHRKDCWYAHPAGRSIDAGGXXXXXXXXXXYGAMPNGSNGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNECRYGFQCKREDCHFSHPFGRAIDGDGXXXXXXXXXXXXXRRPALNRGTSNNSVGSVTRGMSELSFGSYPPANATDDEQDLRDTWFPKARDCTCCKGFVYGCTADICDSMGQCTCS 678
RGP PCRFG C R DC+++HP GR+I G AMP G CR+G C R+DC+F+HP GR IDG R A + + MS L Q ++TW+ AR+CTCCKGFVYGCT C + +CTCS
Sbjct: 19 RGPTPCRFGYSCRRPDCYFSHPEGRAIGVAGAPGAPVIPP---AMPGG---------------------------------FVPRGPPVPAYHPPAPAPGGGAGNKRACRFGQGCTRQDCYFAHPEGRTIDGSAKPGGGGG-------RSAPQYRPMQPHYQPIQQAMSAL--------------QIKKETWYANARNCTCCKGFVYGCTTPACAAQEECTCS 184 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17473.1 >prot_E-siliculosus-1a_M_contig95.17473.1 ID=prot_E-siliculosus-1a_M_contig95.17473.1|Name=mRNA_E-siliculosus-1a_M_contig95.17473.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=461bp MNGRGPMPCRFGVDCHRKDCWYAHPAGRSIDAGGGGGAGAGSSSYGAMPNback to top mRNA from alignment at E-siliculosus-1a_M_contig95:60280..68309- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17473.1 ID=mRNA_E-siliculosus-1a_M_contig95.17473.1|Name=mRNA_E-siliculosus-1a_M_contig95.17473.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8030bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:60280..68309- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:60280..68309- >mRNA_E-siliculosus-1a_M_contig95.17473.1 ID=mRNA_E-siliculosus-1a_M_contig95.17473.1|Name=mRNA_E-siliculosus-1a_M_contig95.17473.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2766bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:60280..68309- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |