mRNA_E-siliculosus-1a_M_contig95.17467.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17467.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17467.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:12923..13954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size558
Model size1032
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17467.1prot_E-siliculosus-1a_M_contig95.17467.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 13334..13891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.7356272-UTR-E-siliculosus-1a_M_contig95:12922..133331622936508.7356272-UTR-E-siliculosus-1a_M_contig95:12922..13333Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 12923..13333 +
1696251109.9852972-UTR-E-siliculosus-1a_M_contig95:12922..133331696251109.9852972-UTR-E-siliculosus-1a_M_contig95:12922..13333Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 12923..13333 +
1622936508.7681513-UTR-E-siliculosus-1a_M_contig95:13891..139541622936508.7681513-UTR-E-siliculosus-1a_M_contig95:13891..13954Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 13892..13954 +
1696251110.0057147-UTR-E-siliculosus-1a_M_contig95:13891..139541696251110.0057147-UTR-E-siliculosus-1a_M_contig95:13891..13954Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 13892..13954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.7500339-CDS-E-siliculosus-1a_M_contig95:13333..138911622936508.7500339-CDS-E-siliculosus-1a_M_contig95:13333..13891Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 13334..13891 +
1696251109.9963062-CDS-E-siliculosus-1a_M_contig95:13333..138911696251109.9963062-CDS-E-siliculosus-1a_M_contig95:13333..13891Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 13334..13891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17467.1

>prot_E-siliculosus-1a_M_contig95.17467.1 ID=prot_E-siliculosus-1a_M_contig95.17467.1|Name=mRNA_E-siliculosus-1a_M_contig95.17467.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=186bp
MMSYRGCCVEFVRVLSFSSDFSENGLGVFAASVWPLKCWKLLSGDCNRLF
VKTIAIAKRLPQRGDANDAHQNSVARCNALSVEVDFRKMEQCGVWRVSGE
DWDGGIEDRGREKERQMPGPQKVEKKEKGKKSRKAQKKETQGGKKNRKRG
GEECSENDMKENYRGLRGGLTRRSTSSDEQRYPKE*
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mRNA from alignment at E-siliculosus-1a_M_contig95:12923..13954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17467.1 ID=mRNA_E-siliculosus-1a_M_contig95.17467.1|Name=mRNA_E-siliculosus-1a_M_contig95.17467.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:12923..13954+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTTTTTGCTGGTTCGAAGTTCCCGGCGTGACGGCATCAGGGTAGAGGCGG
ACTTGGTTCAAGCGGTGGAAATAGAAGGCCATAGATTAGACTAGAGGATG
CCTGTATTTGTTTTTGGGCTAATCCGACGGTCCCGGCGTGACGGCATCAG
GGTAGAGGCGGAGGGAAGAACGAGAGAGGCGAGAGCCCGAAAAGAAAAGA
AAAAGGAGAAAAGAAGGAAAAGAAACAAAAAGGGAAAAAGAAGAAAAAGA
CAAAAATATATGTACGTGATACTTGTTTCTATTTTTCATTTTAGTTGGTC
TCGCGTGTCGAGCGGGAGCGGTGGGCTCTGTGGATCGATCCCTCTTTCAA
TCACCTTTGTCCGGCGAGATGCTTGCTGCGAAGTCGGACTTGTTGGTGGC
GTTTGTCTGAGATGATGTCTTATCGCGGCTGCTGTGTTGAATTTGTCCGC
GTCCTTTCCTTCTCTTCCGATTTTTCGGAAAATGGACTTGGAGTTTTTGC
TGCGTCAGTTTGGCCATTGAAATGTTGGAAGTTGCTCAGCGGAGATTGTA
ACCGCCTATTCGTGAAGACAATAGCAATCGCGAAAAGACTGCCGCAACGA
GGTGACGCGAATGACGCGCACCAAAATAGTGTTGCTCGATGCAATGCCCT
CAGCGTTGAAGTGGATTTTCGGAAGATGGAACAATGTGGTGTATGGAGGG
TTTCAGGGGAGGATTGGGACGGAGGGATTGAGGATCGGGGCAGAGAGAAA
GAGAGGCAGATGCCAGGACCCCAAAAAGTGGAAAAGAAAGAAAAAGGGAA
AAAAAGTCGAAAAGCACAGAAAAAGGAAACACAAGGGGGAAAGAAGAACA
GAAAAAGGGGCGGAGAAGAATGTAGCGAAAATGACATGAAGGAAAACTAC
CGAGGGTTGCGTGGCGGGTTGACGAGACGAAGCACTAGCAGCGACGAGCA
GCGATACCCTAAGGAGTGAAATGAATGTCGAGACGGGTTGGGATTGTGAT
CTGCATGTCGAGTCTTGAGAGTTTCGGGGAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:12923..13954+

>mRNA_E-siliculosus-1a_M_contig95.17467.1 ID=mRNA_E-siliculosus-1a_M_contig95.17467.1|Name=mRNA_E-siliculosus-1a_M_contig95.17467.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1116bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:12923..13954+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATGTCTTATCGCGGCTGCTGTGTTGAATTTGTCCGCGTCCTTTCCTT
CTCTTCCGATTTTTCGGAAAATGGACTTGGAGTTTTTGCTGCGTCAGTTT
GGCCATTGAAATGTTGGAAGTTGCTCAGCGGAGATTGTAACCGCCTATTC
GTGAAGACAATAGCAATCGCGAAAAGACTGCCGCAACGAGGTGACGCGAA
TGACGCGCACCAAAATAGTGTTGCTCGATGCAATGCCCTCAGCGTTGAAG
TGGATTTTCGGAAGATGGAACAATGTGGTGTATGGAGGGTTTCAGGGGAG
GATTGGGACGGAGGGATTGAGGATCGGGGCAGAGAGAAAGAGAGGCAGAT
GCCAGGACCCCAAAAAGTGGAAAAGAAAGAAAAAGGGAAAAAAAGTCGAA
AAGCACAGAAAAAGGAAACACAAGGGGGAAAGAAGAACAGAAAAAGGGGC
GGAGAAGAATGTAGCGAAAATGACATGAAGGAAAACTACCGAGGGTTGCG
TGGCGGGTTGACGAGACGAAGCACTAGCAGCGACGAGCAGCGATACCCTA
AGGAGTGAATGATGTCTTATCGCGGCTGCTGTGTTGAATTTGTCCGCGTC
CTTTCCTTCTCTTCCGATTTTTCGGAAAATGGACTTGGAGTTTTTGCTGC
GTCAGTTTGGCCATTGAAATGTTGGAAGTTGCTCAGCGGAGATTGTAACC
GCCTATTCGTGAAGACAATAGCAATCGCGAAAAGACTGCCGCAACGAGGT
GACGCGAATGACGCGCACCAAAATAGTGTTGCTCGATGCAATGCCCTCAG
CGTTGAAGTGGATTTTCGGAAGATGGAACAATGTGGTGTATGGAGGGTTT
CAGGGGAGGATTGGGACGGAGGGATTGAGGATCGGGGCAGAGAGAAAGAG
AGGCAGATGCCAGGACCCCAAAAAGTGGAAAAGAAAGAAAAAGGGAAAAA
AAGTCGAAAAGCACAGAAAAAGGAAACACAAGGGGGAAAGAAGAACAGAA
AAAGGGGCGGAGAAGAATGTAGCGAAAATGACATGAAGGAAAACTACCGA
GGGTTGCGTGGCGGGTTGACGAGACGAAGCACTAGCAGCGACGAGCAGCG
ATACCCTAAGGAGTGA
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