mRNA_E-siliculosus-1a_M_contig95.17485.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17485.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17485.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17485.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 1.350e-75
Identity = 143/180 (79.44%), Postives = 145/180 (80.56%), Query Frame = 1 
Query:  724 EALPQGSGGDPWASSKRQLPLPLQPLAGRCNFRGCGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADTGGGG------CSPPAWEGGGAGGSXXXXXXRVGGVRHGXGGGFGSGANSAAFRENRSRLEAAMASAAHSPAA 1245
            EA P  SGGDPWASSKRQLPLPLQPLAGRCNF GCG+ISVFRC RCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADST+VVPA               CS PAWEGG AGGS      RV GVRHGX      GANSAAFRENRSRLEAAMASAAHSPAA
Sbjct:  219 EATPHCSGGDPWASSKRQLPLPLQPLAGRCNFEGCGQISVFRCRRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTKVVPAXXXXXXXXXXXXXXXCSSPAWEGGSAGGSGAKGSGRVEGVRHGXXXXXXXGANSAAFRENRSRLEAAMASAAHSPAA 398
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17485.1 vs. uniprot
Match: D7G1S8_ECTSI (Egl nine homolog 1 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S8_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.290e-58
Identity = 102/119 (85.71%), Postives = 105/119 (88.24%), Query Frame = 1 
Query:  835 ISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADTG--GGGCSPPAWEGGGAGGSXXXXXXRVGGVRHGXGGGFGSGANSAAF 1185
            IS+FRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQ+QKAVGWADSTRVVPASAA     GGG SPPAWEGGGAG +      RVGGVRHG GGGFGSGANSAAF
Sbjct:   30 ISLFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQKQKAVGWADSTRVVPASAASAADRGGGFSPPAWEGGGAGDNGAKGSGRVGGVRHGGGGGFGSGANSAAF 148
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17485.1 vs. uniprot
Match: A0A0C2CTP1_9DELT (MYND-type domain-containing protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2CTP1_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 2.530e-5
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:  826 CGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVC 927
            CG+ ++ RC RC A FYC ++HQR DWA H+++C
Sbjct:   63 CGKSTIQRCARCAAVFYCGKEHQRRDWARHKKLC 96
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17485.1 vs. uniprot
Match: A0A6A6JJX3_9PLEO (MYND-type zinc finger protein samB n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JJX3_9PLEO)

HSP 1 Score: 56.6 bits (135), Expect = 4.160e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  826 CGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEG 936
            CG+ +  +CGRC+ A+YCNRD QRSDW  HR+ C EG
Sbjct:   12 CGKSASLQCGRCKNAWYCNRDCQRSDWKTHRKDCSEG 48
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE1.350e-7579.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1S8_ECTSI1.290e-5885.71Egl nine homolog 1 (Partial) (Fragment) n=1 Tax=Ec... [more]
A0A0C2CTP1_9DELT2.530e-552.94MYND-type domain-containing protein n=1 Tax=Enhygr... [more]
A0A6A6JJX3_9PLEO4.160e-559.46MYND-type zinc finger protein samB n=1 Tax=Westerd... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:188105..189919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size1368
Model size1368
Exons2
Ec32 orthologEc-07_004300.1
Ec32 ortholog descriptionZinc finger, MYND-type
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.5415874-CDS-E-siliculosus-1a_M_contig95:188104..1886381622936508.5415874-CDS-E-siliculosus-1a_M_contig95:188104..188638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 188105..188638 -
1696251109.8927488-CDS-E-siliculosus-1a_M_contig95:188104..1886381696251109.8927488-CDS-E-siliculosus-1a_M_contig95:188104..188638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 188105..188638 -
1622936508.5597334-CDS-E-siliculosus-1a_M_contig95:189085..1899191622936508.5597334-CDS-E-siliculosus-1a_M_contig95:189085..189919Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 189086..189919 -
1696251109.9032543-CDS-E-siliculosus-1a_M_contig95:189085..1899191696251109.9032543-CDS-E-siliculosus-1a_M_contig95:189085..189919Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 189086..189919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17485.1prot_E-siliculosus-1a_M_contig95.17485.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 188105..189919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17485.1

>prot_E-siliculosus-1a_M_contig95.17485.1 ID=prot_E-siliculosus-1a_M_contig95.17485.1|Name=mRNA_E-siliculosus-1a_M_contig95.17485.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=456bp
MPAVSDGPLTGAGGGGGGGGKERGSVSLRIRRRRLSFDGAVDRVPRWWEA
AGAEEERGGAIGAAVSGVTAAAAAQQRKRANTWCSSSGSTGSATAVSTSL
LVRAEEEEEEEEEEEMHCRADERNNTEEAAATFVTAAIEAAAAAAAAAAA
AAAAAAAAAAEGEEATSTTASGGGGGGAAAAGEGTTSIPMVASTAKESDS
GAAAAAVAVPTRTTTPATIVSGEAASSEAAAAAEEAVAASSEALPQGSGG
DPWASSKRQLPLPLQPLAGRCNFRGCGRISVFRCGRCRAAFYCNRDHQRS
DWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADTG
GGGCSPPAWEGGGAGGSGAKGSGRVGGVRHGGGGGFGSGANSAAFRENRS
RLEAAMASAAHSPAAAIDGGGGGGGFDPTHVRTSRGGASWTVPASNDNGG
GAGSAA
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mRNA from alignment at E-siliculosus-1a_M_contig95:188105..189919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17485.1 ID=mRNA_E-siliculosus-1a_M_contig95.17485.1|Name=mRNA_E-siliculosus-1a_M_contig95.17485.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:188105..189919- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGCCGTAAGCGACGGCCCCCTCACCGGCGCTGGCGGCGGCGGTGG
CGGCGGCGGTAAGGAGAGGGGGAGCGTCAGTCTCCGTATCCGTCGTCGGA
GACTTAGTTTCGACGGCGCTGTGGATCGCGTCCCACGGTGGTGGGAGGCC
GCCGGGGCGGAGGAGGAGCGAGGCGGCGCAATCGGAGCCGCCGTTTCCGG
TGTTACTGCTGCTGCTGCTGCTCAGCAGCGTAAGCGGGCGAACACGTGGT
GCTCGTCGTCAGGCTCGACCGGGAGCGCGACAGCAGTATCGACGTCTTTG
CTGGTGCGGGCGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAATGCA
TTGCAGAGCTGACGAAAGGAATAACACGGAAGAAGCGGCAGCGACCTTTG
TGACGGCGGCGATAGAAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGGAGAAGAAGCAACGTC
AACGACCGCATCAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAG
GAACGACGTCCATCCCTATGGTCGCCAGCACTGCCAAGGAAAGCGACTCG
GGGGCAGCAGCAGCAGCAGTTGCGGTACCCACAAGGACGACGACACCCGC
GACCATCGTCTCCGGAGAGGCGGCAAGCAGCGAAGCAGCAGCAGCGGCAG
AAGAAGCCGTCGCGGCAAGCAGCGAGGCCCTCCCCCAAGGGAGCGGCGGC
GACCCGTGGGCGAGCAGCAAGAGGCAGCTGCCACTTCCTCTCCAGCCTCT
CGCCGGAAGGTGCAACTTCAGGGGCTGTGGCCGGGTATGTATGTAGAACA
TACCGGCGGGTGCTGCTGTGTTTATGGGATATGTCAGCGAGAGTCGATGT
GACGCTCGCCGCCGCTGTTTCGGCCTATCGGCGTCCGGGCGTATACCGTA
CGACATCCGTTGGCAGCAGCGTGATTTTTTGTCTTTTTTTCAGTCTTCGC
CCTTGAAATTTCTGGACCAAAGTGTTCAATGTACGATATGGAAACCCCCG
CGGGACCTGCGCGCACCCGATGTACGCGCGAGATAGCCTCAGCGTTTCCG
TCGTTTTTCGTACGGCGCCCCAGCTTCGATACTGCGATATGGACGCTCCG
CAGCTGCGGTGAGAGACAAACCCGTAGGCTGCCCGTCCCCTTCACCGAGG
AGGGGGGCAACGTGGTTGGTGGTGCCAGTATGCTTACCCCCCTTCCTCAC
AATACCTCTTGCGTTTACTCCCTCCGTCCAGATATCGGTGTTCCGGTGCG
GGCGGTGCCGAGCGGCGTTCTACTGCAACCGAGACCACCAGCGGAGCGAC
TGGGCGTGGCACCGGCGGGTCTGTGACGAGGGAAAGGGCGAGCCCCCCCC
CCCGCTCGCGCGGCTGGTCCTCCCGGCGCAGAGGCAGAAGGCTGTTGGCT
GGGCCGACTCCACCCGGGTGGTACCGGCGTCGGCGGCGGACACGGGGGGG
GGGGGTTGCTCCCCTCCCGCCTGGGAAGGAGGCGGCGCCGGCGGCAGCGG
TGCGAAAGGCAGTGGTCGTGTCGGAGGCGTTAGGCACGGGGGCGGCGGTG
GTTTTGGTTCGGGCGCGAACAGCGCGGCGTTTCGGGAGAACCGGTCCCGC
TTGGAGGCCGCGATGGCGTCGGCGGCTCACTCACCAGCAGCGGCGATCGA
CGGCGGCGGCGGCGGCGGCGGTTTCGACCCCACCCACGTGCGTACGTCTC
GCGGGGGGGCCTCGTGGACTGTGCCCGCGTCCAACGACAACGGCGGCGGG
GCCGGAAGCGCGGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:188105..189919-

>mRNA_E-siliculosus-1a_M_contig95.17485.1 ID=mRNA_E-siliculosus-1a_M_contig95.17485.1|Name=mRNA_E-siliculosus-1a_M_contig95.17485.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2736bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:188105..189919- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGCCGTAAGCGACGGCCCCCTCACCGGCGCTGGCGGCGGCGGTGG
CGGCGGCGGTAAGGAGAGGGGGAGCGTCAGTCTCCGTATCCGTCGTCGGA
GACTTAGTTTCGACGGCGCTGTGGATCGCGTCCCACGGTGGTGGGAGGCC
GCCGGGGCGGAGGAGGAGCGAGGCGGCGCAATCGGAGCCGCCGTTTCCGG
TGTTACTGCTGCTGCTGCTGCTCAGCAGCGTAAGCGGGCGAACACGTGGT
GCTCGTCGTCAGGCTCGACCGGGAGCGCGACAGCAGTATCGACGTCTTTG
CTGGTGCGGGCGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAATGCA
TTGCAGAGCTGACGAAAGGAATAACACGGAAGAAGCGGCAGCGACCTTTG
TGACGGCGGCGATAGAAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGGAGAAGAAGCAACGTC
AACGACCGCATCAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAG
GAACGACGTCCATCCCTATGGTCGCCAGCACTGCCAAGGAAAGCGACTCG
GGGGCAGCAGCAGCAGCAGTTGCGGTACCCACAAGGACGACGACACCCGC
GACCATCGTCTCCGGAGAGGCGGCAAGCAGCGAAGCAGCAGCAGCGGCAG
AAGAAGCCGTCGCGGCAAGCAGCGAGGCCCTCCCCCAAGGGAGCGGCGGC
GACCCGTGGGCGAGCAGCAAGAGGCAGCTGCCACTTCCTCTCCAGCCTCT
CGCCGGAAGGTGCAACTTCAGGGGCTGTGGCCGGATGCCTGCCGTAAGCG
ACGGCCCCCTCACCGGCGCTGGCGGCGGCGGTGGCGGCGGCGGTAAGGAG
AGGGGGAGCGTCAGTCTCCGTATCCGTCGTCGGAGACTTAGTTTCGACGG
CGCTGTGGATCGCGTCCCACGGTGGTGGGAGGCCGCCGGGGCGGAGGAGG
AGCGAGGCGGCGCAATCGGAGCCGCCGTTTCCGGTGTTACTGCTGCTGCT
GCTGCTCAGCAGCGTAAGCGGGCGAACACGTGGTGCTCGTCGTCAGGCTC
GACCGGGAGCGCGACAGCAGTATCGACGTCTTTGCTGGTGCGGGCGGAAG
AGGAGGAGGAAGAAGAAGAAGAAGAAGAAATGCATTGCAGAGCTGACGAA
AGGAATAACACGGAAGAAGCGGCAGCGACCTTTGTGACGGCGGCGATAGA
AGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGAAGGAGAAGAAGCAACGTCAACGACCGCATCAGGA
GGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAACGACGTCCATCCC
TATGGTCGCCAGCACTGCCAAGGAAAGCGACTCGGGGGCAGCAGCAGCAG
CAGTTGCGGTACCCACAAGGACGACGACACCCGCGACCATCGTCTCCGGA
GAGGCGGCAAGCAGCGAAGCAGCAGCAGCGGCAGAAGAAGCCGTCGCGGC
AAGCAGCGAGGCCCTCCCCCAAGGGAGCGGCGGCGACCCGTGGGCGAGCA
GCAAGAGGCAGCTGCCACTTCCTCTCCAGCCTCTCGCCGGAAGGTGCAAC
TTCAGGGGCTGTGGCCGGATATCGGTGTTCCGGTGCGGGCGGTGCCGAGC
GGCGTTCTACTGCAACCGAGACCACCAGCGGAGCGACTGGGCGTGGCACC
GGCGGGTCTGTGACGAGGGAAAGGGCGAGCCCCCCCCCCCGCTCGCGCGG
CTGGTCCTCCCGGCGCAGAGGCAGAAGGCTGTTGGCTGGGCCGACTCCAC
CCGGGTGGTACCGGCGTCGGCGGCGGACACGGGGGGGGGGGGTTGCTCCC
CTCCCGCCTGGGAAGGAGGCGGCGCCGGCGGCAGCGGTGCGAAAGGCAGT
GGTCGTGTCGGAGGCGTTAGGCACGGGGGCGGCGGTGGTTTTGGTTCGGG
CGCGAACAGCGCGGCGTTTCGGGAGAACCGGTCCCGCTTGGAGGCCGCGA
TGGCGTCGGCGGCTCACTCACCAGCAGCGGCGATCGACGGCGGCGGCGGC
GGCGGCGGTTTCGACCCCACCCACGTGCGTACGTCTCGCGGGGGGGCCTC
GTGGACTGTGCCCGCGTCCAACGACAACGGCGGCGGGGCCGGAAGCGCGG
CGATATCGGTGTTCCGGTGCGGGCGGTGCCGAGCGGCGTTCTACTGCAAC
CGAGACCACCAGCGGAGCGACTGGGCGTGGCACCGGCGGGTCTGTGACGA
GGGAAAGGGCGAGCCCCCCCCCCCGCTCGCGCGGCTGGTCCTCCCGGCGC
AGAGGCAGAAGGCTGTTGGCTGGGCCGACTCCACCCGGGTGGTACCGGCG
TCGGCGGCGGACACGGGGGGGGGGGGTTGCTCCCCTCCCGCCTGGGAAGG
AGGCGGCGCCGGCGGCAGCGGTGCGAAAGGCAGTGGTCGTGTCGGAGGCG
TTAGGCACGGGGGCGGCGGTGGTTTTGGTTCGGGCGCGAACAGCGCGGCG
TTTCGGGAGAACCGGTCCCGCTTGGAGGCCGCGATGGCGTCGGCGGCTCA
CTCACCAGCAGCGGCGATCGACGGCGGCGGCGGCGGCGGCGGTTTCGACC
CCACCCACGTGCGTACGTCTCGCGGGGGGGCCTCGTGGACTGTGCCCGCG
TCCAACGACAACGGCGGCGGGGCCGGAAGCGCGGCG
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