mRNA_E-siliculosus-1a_M_contig95.17483.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17483.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17483.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:185174..186688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size342
Model size548
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17483.1prot_E-siliculosus-1a_M_contig95.17483.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 185393..186688 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.4406998-UTR-E-siliculosus-1a_M_contig95:185173..1852981622936508.4406998-UTR-E-siliculosus-1a_M_contig95:185173..185298Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 185174..185298 -
1696251109.857552-UTR-E-siliculosus-1a_M_contig95:185173..1852981696251109.857552-UTR-E-siliculosus-1a_M_contig95:185173..185298Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 185174..185298 -
1622936508.4643493-UTR-E-siliculosus-1a_M_contig95:185313..1853921622936508.4643493-UTR-E-siliculosus-1a_M_contig95:185313..185392Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 185314..185392 -
1696251109.8658702-UTR-E-siliculosus-1a_M_contig95:185313..1853921696251109.8658702-UTR-E-siliculosus-1a_M_contig95:185313..185392Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 185314..185392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.4808714-CDS-E-siliculosus-1a_M_contig95:185392..1856061622936508.4808714-CDS-E-siliculosus-1a_M_contig95:185392..185606Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 185393..185606 -
1696251109.8741176-CDS-E-siliculosus-1a_M_contig95:185392..1856061696251109.8741176-CDS-E-siliculosus-1a_M_contig95:185392..185606Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 185393..185606 -
1622936508.4976285-CDS-E-siliculosus-1a_M_contig95:186560..1866881622936508.4976285-CDS-E-siliculosus-1a_M_contig95:186560..186688Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 186561..186688 -
1696251109.8823056-CDS-E-siliculosus-1a_M_contig95:186560..1866881696251109.8823056-CDS-E-siliculosus-1a_M_contig95:186560..186688Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 186561..186688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17483.1

>prot_E-siliculosus-1a_M_contig95.17483.1 ID=prot_E-siliculosus-1a_M_contig95.17483.1|Name=mRNA_E-siliculosus-1a_M_contig95.17483.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=114bp
GSRWWKEGGGGGGGGGGRCLEGGGETVAGDCSCVRGQRLFPRSGGIRPTR
PLPRNRARGLVPLAGGRGTRSRAAGDRRGAPLRVVDGGGGGGGGGRDRGR
RGRPREHRRQRRR*
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mRNA from alignment at E-siliculosus-1a_M_contig95:185174..186688-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17483.1 ID=mRNA_E-siliculosus-1a_M_contig95.17483.1|Name=mRNA_E-siliculosus-1a_M_contig95.17483.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:185174..186688- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGAAGCCGTTGGTGGAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG
GAGGTGTCTTGAAGGTGGTGGTGAGACCGTTGCCGGGGACTGCTCCTGCG
TCCGTGGACAGCGGCTCTTCCCGAGGAGGTGTGTGAGAGCGTGTGAGAGT
CGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGA
GAGAGATGTACAGCAGTAGAATCGTGAAGTCGAGGAGTGATTGCGCATCC
CCTTTAGGGTGTGTGTGCTCATAGCCGTGAATGCCGTAGTCACTAGACCA
TGGACGTCGCATCCCTACCGATATGGAGGAGGGGCGTACTCATGCTTTGC
ATGCCTTAGTTATTGGACCATTGACGACGCGTCTTGGAGAGGAGGGCGGA
GCATTGTTCCCACAGTAAAACCGATCACCGGTGCCCAATTCCTTCCTACT
TTGCCCAAGGTGGCTCTAACAATGTGTGTGTGGTGGAGTGAGTTTCGAAG
CTCGATTGCTGGTTCACACCCGAGATAGAGCGAAGACGCGTCGGGACCGA
TTCGTTCACGGCGGGACATACGTATGTGACGTGACGTAAGATATCACACC
CCCTTGACCGATTTTCGGAGCTCGATTACTCCACGACGAAGACGATGGAT
GCCACATCAGTCAAACGAATGGTGCGTTTTCGGAAAGCTCTCGATGAGAC
GGCTCCAATGCCGCTATTTCCGGCACCACTACCGCCACTGTTTCTTCTGT
GGAGTCATCGAGCTTTTAAATCGGCCAATGGTGTGTGATATCTTACGTCA
TGTCGCCTCGGCGGTAGTAGATCGTTCCCAAGACGGCTCGTTTTTTTCCC
GGCAAAGTGCCATCCTATTGAAATTTTGCGGAGCAATCGAGGGTGGGCCA
TGATGAAAATGTGTGTGTGTGTACGACTCTCGCACCGTATTTTTCGGTGC
TTGTGATTTTTGCGGGGCACCGCATCGACCGCTTCACCCACCGAACGTTC
GCGTTCGCCCGTGTCCACCACGGCCGTTCTCGCCCCCTGCCCCGCTGGCG
TGTGATTTGATTCTTCCACAAAACAAAAAAAGCGGCGGAATACGACCGAC
CAGACCTTTGCCAAGAAATCGAGCACGTGGTCTCGTTCCCCTGGCCGGAG
GCCGAGGCACTCGCTCGCGCGCGGCAGGAGACCGCCGAGGCGCTCCGCTC
CGCGTCGTCGACGGCGGCGGGGGCGGCGGCGGCGGCGGTAGGGATCGAGG
GCGGCGGGGGCGACCTCGGGAGCATCGGCGGCAGCGGCGGCGGTAGCGGC
GGCCAGGAAGAGGGACTCTCGGCTGCTGCTGCTGCTGCACCTCCGAGCGA
CAGCCACTTTCAGGCGCCCGCCGCCACCGCCGCCGCCGCCGCACCATTGT
CGCTGTCGTCGCAGTCCTACGGCGGTGGCGGTGCTCGAAGCCCGCCCTCC
TGGGGCGAGAAGGTGGCCGAAACCTAACACATGAGTAGGGAAAGCAGTCG
TTGTCTAGTGTTTGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:185174..186688-

>mRNA_E-siliculosus-1a_M_contig95.17483.1 ID=mRNA_E-siliculosus-1a_M_contig95.17483.1|Name=mRNA_E-siliculosus-1a_M_contig95.17483.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:185174..186688- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGAAGCCGTTGGTGGAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG
GAGGTGTCTTGAAGGTGGTGGTGAGACCGTTGCCGGGGACTGCTCCTGCG
TCCGTGGACAGCGGCTCTTCCCGAGGAGGGAAGCCGTTGGTGGAAAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGGAGGTGTCTTGAAGGTGGTGGT
GAGACCGTTGCCGGGGACTGCTCCTGCGTCCGTGGACAGCGGCTCTTCCC
GAGGAGCGGCGGAATACGACCGACCAGACCTTTGCCAAGAAATCGAGCAC
GTGGTCTCGTTCCCCTGGCCGGAGGCCGAGGCACTCGCTCGCGCGCGGCA
GGAGACCGCCGAGGCGCTCCGCTCCGCGTCGTCGACGGCGGCGGGGGCGG
CGGCGGCGGCGGTAGGGATCGAGGGCGGCGGGGGCGACCTCGGGAGCATC
GGCGGCAGCGGCGGCGGTAGCGGCGGAATACGACCGACCAGACCTTTGCC
AAGAAATCGAGCACGTGGTCTCGTTCCCCTGGCCGGAGGCCGAGGCACTC
GCTCGCGCGCGGCAGGAGACCGCCGAGGCGCTCCGCTCCGCGTCGTCGAC
GGCGGCGGGGGCGGCGGCGGCGGCGGTAGGGATCGAGGGCGGCGGGGGCG
ACCTCGGGAGCATCGGCGGCAGCGGCGGCGGTAG
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