mRNA_E-siliculosus-1a_M_contig95.17472.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17472.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17472.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17472.1 vs. uniprot
Match: D7G138_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G138_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 9.670e-32
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 2 
Query:    2 TCVEAVHAVSWLWAKDAPSTARPVKGTSTTRTTCGHWSLMVSLMKPGGGARRSKLAAIFRYSAKPSSIEF 211
            TCVEAVHAV WLWA DAPSTAR VKGTSTTRTTCGHWSLMVSLMK G G+RRSKLAAIFRYSAKPSSI+F
Sbjct:  217 TCVEAVHAVFWLWANDAPSTARHVKGTSTTRTTCGHWSLMVSLMKRGDGSRRSKLAAIFRYSAKPSSIKF 286
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G138_ECTSI9.670e-3290.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:57967..59542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size456
Model size888
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17472.1prot_E-siliculosus-1a_M_contig95.17472.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 57967..59110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.361413-CDS-E-siliculosus-1a_M_contig95:57966..581461622936508.361413-CDS-E-siliculosus-1a_M_contig95:57966..58146Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 57967..58146 +
1696251109.8329074-CDS-E-siliculosus-1a_M_contig95:57966..581461696251109.8329074-CDS-E-siliculosus-1a_M_contig95:57966..58146Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 57967..58146 +
1622936508.3888571-CDS-E-siliculosus-1a_M_contig95:58834..591101622936508.3888571-CDS-E-siliculosus-1a_M_contig95:58834..59110Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 58835..59110 +
1696251109.841497-CDS-E-siliculosus-1a_M_contig95:58834..591101696251109.841497-CDS-E-siliculosus-1a_M_contig95:58834..59110Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 58835..59110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.401755-UTR-E-siliculosus-1a_M_contig95:59110..595421622936508.401755-UTR-E-siliculosus-1a_M_contig95:59110..59542Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 59111..59542 +
1696251109.849468-UTR-E-siliculosus-1a_M_contig95:59110..595421696251109.849468-UTR-E-siliculosus-1a_M_contig95:59110..59542Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 59111..59542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17472.1

>prot_E-siliculosus-1a_M_contig95.17472.1 ID=prot_E-siliculosus-1a_M_contig95.17472.1|Name=mRNA_E-siliculosus-1a_M_contig95.17472.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=152bp
HVCGGSPCRVLVVGQRCSIHRPPCQGHQHDPDYLWTLVFDGVAHEAGGRS
PPFEIGGHFQVFREAFIDRIHRDQRSWCWGRRGGFRATSVVIDGADPWRR
TQASFDRVFGGGNISNSNGNTSEVEMTMLGYAWYALRFSGTCHVHVVCFI
L*
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mRNA from alignment at E-siliculosus-1a_M_contig95:57967..59542+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17472.1 ID=mRNA_E-siliculosus-1a_M_contig95.17472.1|Name=mRNA_E-siliculosus-1a_M_contig95.17472.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1576bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:57967..59542+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACGTGTGTGGAGGCAGTCCATGCCGTGTCTTGGTTGTGGGCCAAAGATG
CTCCATCCACCGCCCGCCCTGTCAAGGGCACCAGCACGACCCGGACTACC
TGTGGACATTGGTCTTTGATGGTGTCGCTCATGAAGCCGGGGGGCGGAGC
CCGCCGTTCGAAATTGGCGGCCATTTTCAGGTGTAGTGGGGCGCATGCGG
TGAAAGTTGGGGGAATCATGAAGGTCGGTCTCATCTCGACCGCCGTTCCA
GATTATTAGCCTCTACTGTTGGATGCGGCCACTGCTGTTGCGGCTGTTGC
TTGTAGTAGGGAGCGCTGCGCTGCCTCGTCGCTAAGCGTGAATTCACGTA
GTCCCGCTGGCCTGGTACCCTTCGGTCGGACATGCGTACCACTCCTCCGC
TCCTGTAAGATGGTAGGCGGGAGGGTCCCGTAGACACAGAAACTTCATTT
GCCAGAAGGGCGCGCGCTCTCATGTCAACAGTACACAATGCCGCCTGGCC
GGCGCCTTCCCAAACGCTTTGCCGTCTACTCGCCGGGCTACCCTTACGTT
GCACGTGCCATATATCAAGGCGACTCCTCCTGTGCGTTAGCTTGGTGATG
AGTTGATAGCAGGCCTATCGTATCGGTGCTTGCAGGAGTGGTGTCGATTC
GCACGCGCCATCCGGTTCTTTGAAAATCGAATCCGGTTGATTTTTTCCAG
TTCAAAACGCGCGCCACACCGCTTGAAGAGGAAGAAAATGTTTCATTGTC
CGGCTTTTCGGCCTGTTCGGAATCGGAACTCGTTCCCCACCACGTTGCCG
AGACGGTCTGTTAGCTCGCGCAGTCTACGTCAACTTTGCAGTCCGATCAA
TTTCGCGCACTTCTGCAGGTATTCCGCGAAGCCTTCATCGATCGAATTCA
TCGTGATCAACGGTCCTGGTGTTGGGGGCGGAGAGGGGGTTTTCGGGCCA
CTTCCGTTGTCATTGACGGAGCGGATCCATGGCGGCGCACGCAGGCCAGC
TTCGATAGAGTGTTCGGCGGTGGCAACATCAGCAACAGCAACGGCAACAC
ATCAGAGGTCGAAATGACTATGCTAGGTTACGCCTGGTACGCGTTGAGGT
TTTCGGGAACGTGCCATGTTCACGTTGTTTGTTTTATCCTATAGTTCAGG
GTGCAGACTAATGTTTCTGCGTGCTTTGAAGCATCTACCAGGTAGCTTTG
AGCGATATACGCTCCGCGCAAGCCCACCCGCTTATTGTCACTCGCAATTA
ATGGGTACGTGCGCTGCCTTTTCATGATAGGCTATCCGAAGCAGCTTGAG
GGGGATGCTTGTGTGAAAGAAACGCGCCGTTGTCTGGGCTGTATGCTGCT
GATAATGTTTGCTTCACGTTTTGAAGAACAGATATCGTAAACTGTTGCTG
CGAAGTCGGTTGGTTAAGAACATGCTTTGCGTGAAGAGAAAGCAAGCTCG
ATGGTACGTTGGTTTGCATATGCATACGCGATGACGCGATATAGGTTGGG
GGGTGGTACCGTGCAAAAGTCTTTGATGATTTCTTTAGTAAACATGCTTC
GCCTAACAACGGCGGCTTCATGCGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:57967..59542+

>mRNA_E-siliculosus-1a_M_contig95.17472.1 ID=mRNA_E-siliculosus-1a_M_contig95.17472.1|Name=mRNA_E-siliculosus-1a_M_contig95.17472.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:57967..59542+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACGTGTGTGGAGGCAGTCCATGCCGTGTCTTGGTTGTGGGCCAAAGATG
CTCCATCCACCGCCCGCCCTGTCAAGGGCACCAGCACGACCCGGACTACC
TGTGGACATTGGTCTTTGATGGTGTCGCTCATGAAGCCGGGGGGCGGAGC
CCGCCGTTCGAAATTGGCGGCCATTTTCAGCACGTGTGTGGAGGCAGTCC
ATGCCGTGTCTTGGTTGTGGGCCAAAGATGCTCCATCCACCGCCCGCCCT
GTCAAGGGCACCAGCACGACCCGGACTACCTGTGGACATTGGTCTTTGAT
GGTGTCGCTCATGAAGCCGGGGGGCGGAGCCCGCCGTTCGAAATTGGCGG
CCATTTTCAGGTATTCCGCGAAGCCTTCATCGATCGAATTCATCGTGATC
AACGGTCCTGGTGTTGGGGGCGGAGAGGGGGTTTTCGGGCCACTTCCGTT
GTCATTGACGGAGCGGATCCATGGCGGCGCACGCAGGCCAGCTTCGATAG
AGTGTTCGGCGGTGGCAACATCAGCAACAGCAACGGCAACACATCAGAGG
TCGAAATGACTATGCTAGGTTACGCCTGGTACGCGTTGAGGTTTTCGGGA
ACGTGCCATGTTCACGTTGTTTGTTTTATCCTATAGGTATTCCGCGAAGC
CTTCATCGATCGAATTCATCGTGATCAACGGTCCTGGTGTTGGGGGCGGA
GAGGGGGTTTTCGGGCCACTTCCGTTGTCATTGACGGAGCGGATCCATGG
CGGCGCACGCAGGCCAGCTTCGATAGAGTGTTCGGCGGTGGCAACATCAG
CAACAGCAACGGCAACACATCAGAGGTCGAAATGACTATGCTAGGTTACG
CCTGGTACGCGTTGAGGTTTTCGGGAACGTGCCATGTTCACGTTGTTTGT
TTTATCCTATAG
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