mRNA_E-siliculosus-1a_M_contig94.17439.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17439.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17439.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17439.1 vs. uniprot
Match: D8LN07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN07_ECTSI)

HSP 1 Score: 790 bits (2040), Expect = 1.160e-286
Identity = 423/463 (91.36%), Postives = 429/463 (92.66%), Query Frame = 1 
Query:    4 EDKQLSVRFSGSVDSGPRISSSDDDGESEWEAFDAAFRGQTASMKEPAATATPARVTLARRPFKENQRAANNGRARTHRSDSAASSSAEDLRVLPPTRAGLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHHQVAGSATSHLHENDFNNKYRTHHHQTGAVLQPARL-------DSALATPNSSSPSVLNDTSRAFAWSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGFLLLAASLTLAVPFATSFTVYGEVVVDRALDEDEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELPGGGYGLRTTGPGGYAEGFRPANYDDGXXXXXXXXXSNKPPSILYVGAIAAQSMDADRMGVGILHPPEELGLRLRQAAAHGKRAVVSAYRRLANSATATYHRRLPTLSSTVVTRLGNTPSG 1371
            EDKQLSVRFSGSVDSGPR SSSDDDGESEWEAFDAAFRG+TASM +PAATATP RVTLARRPFKENQRAA+ GRARTHR+DSAASSSAEDLRVL PTRAGLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHH VAGSATSHLHENDFNNKYRTHHHQTGAVLQPAR        D+  ATPNSSSPS LNDTSRAF WSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREG LLLAASLTLAVPFATSFTVYGEVVVDRALDE+EASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSEL GGGYGLRTTGPGGYAEGFRPANYDDG         SNKPPSILYVGAIAAQSMDADRMGVGILHPPEELGLRLRQAAA GKRAVVSAYRRLA SATATYHRRLPTLSST VTRLGN  SG
Sbjct:    2 EDKQLSVRFSGSVDSGPRSSSSDDDGESEWEAFDAAFRGKTASMTDPAATATPGRVTLARRPFKENQRAAS-GRARTHRTDSAASSSAEDLRVLAPTRAGLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHHHVAGSATSHLHENDFNNKYRTHHHQTGAVLQPARRLPLYHHNDATQATPNSSSPSALNDTSRAFVWSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLAVPFATSFTVYGEVVVDRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELTGGGYGLRTTGPGGYAEGFRPANYDDGDGGGR----SNKPPSILYVGAIAAQSMDADRMGVGILHPPEELGLRLRQAAAQGKRAVVSAYRRLAYSATATYHRRLPTLSSTAVTRLGNMSSG 459
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17439.1 vs. uniprot
Match: A0A6H5KPM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPM1_9PHAE)

HSP 1 Score: 708 bits (1828), Expect = 1.710e-254
Identity = 387/455 (85.05%), Postives = 407/455 (89.45%), Query Frame = 1 
Query:    4 EDKQLSVRFSGSVDSGPRISSS-DDDGESEWEAFDAAFRGQTASMKEPAATATPARVTLARRPFKENQRAANNGRARTHRSDSAASSSAEDLRVLPPTRAGLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHHQVAGSATSHLHENDFNNKYRTHHHQTGAVLQPARL-------DSALATPNSSSPSVLNDTSRAFAWSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGFLLLAASLTLAVPFATSFTVYGEVVVDRALDEDEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELPGGGYGLRTTGPGGYAEGFRPANYDDGXXXXXXXXXSNKPPSILYVGAIAAQSMDADRMGVGILHPPEELGLRLRQAAAHGKRAVVSAYRRLANSATATYHRRLPTLSSTVV 1344
            EDKQLSVRFSGSVDSGPRISSS DDDGESEWEAFDAAFRG+TASM EPA+T TPARVTLARRPFKENQRAA+ GRARTHR++SAASSSAED+R+L PTRAG HG +SS A QLAPGYDG++DH+GTSQRP+RHHQV GS TSHLHENDFNNK+RT+H QTGAVLQ AR        D A AT +SSSPSVLNDTSRAFAWSVLLHGCLCEAPLAVLEGLARGPLYLVA+AWVALVASVGASGHAHHHRAGLRKHAAALAREG LLLAASLTLAVPFATSFTVYGEVV  RALDE+EASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSEL GGG+ LRT+ PG  AEGFRP NYDDG         SNKPPSI YVGAIAAQSMDADRMGVG+LHPPEEL LRLRQAAAHGKRAVVSAYRRLANSA ATYHRRLPT SS  V
Sbjct:    2 EDKQLSVRFSGSVDSGPRISSSSDDDGESEWEAFDAAFRGKTASMTEPASTPTPARVTLARRPFKENQRAAS-GRARTHRTNSAASSSAEDMRLLAPTRAGFHGRSSSSAEQLAPGYDGESDHIGTSQRPHRHHQVVGSTTSHLHENDFNNKHRTNH-QTGAVLQSARRLPLYNHNDYAQATSSSSSPSVLNDTSRAFAWSVLLHGCLCEAPLAVLEGLARGPLYLVASAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLAVPFATSFTVYGEVVAGRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELTGGGHSLRTSSPGVCAEGFRPTNYDDGGSGGGGR--SNKPPSIRYVGAIAAQSMDADRMGVGMLHPPEELKLRLRQAAAHGKRAVVSAYRRLANSAAATYHRRLPTFSSNAV 452
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17439.1 vs. uniprot
Match: A0A7S2RB02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB02_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.630e-5
Identity = 42/124 (33.87%), Postives = 59/124 (47.58%), Query Frame = 1 
Query:  607 EAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLR-------KHAAALAREGFLLLAASLTLAVPFATSFTVYGEVVVDRALDEDEASWDVRPVPTVLGAVDPLRFCVFAFGQAGE 957
            EAPLAV E + R  +YL AA+++ +V+ +     A               +H+ ALARE            +P   SF VY      R    +   W + P+PTVLG+VDP RF  F+ GQ G+
Sbjct:  185 EAPLAVAEAVCRAIVYLFAASFILVVSGMYYLAEAXXXXXEDEPLWLLSFRHSQALAREALXXXXXXXXXXIP-CCSFFVY------RDFRPEADDWQLSPLPTVLGSVDPRRFVAFSLGQGGD 301
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN07_ECTSI1.160e-28691.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPM1_9PHAE1.710e-25485.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RB02_9STRA5.630e-533.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:469820..471193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1374
Model size1374
Exons1
Ec32 orthologEc-27_000920.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936502.1355872-CDS-E-siliculosus-1a_M_contig94:469819..4711931622936502.1355872-CDS-E-siliculosus-1a_M_contig94:469819..471193Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 469820..471193 -
1696251107.4750056-CDS-E-siliculosus-1a_M_contig94:469819..4711931696251107.4750056-CDS-E-siliculosus-1a_M_contig94:469819..471193Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 469820..471193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17439.1prot_E-siliculosus-1a_M_contig94.17439.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 469820..471193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17439.1

>prot_E-siliculosus-1a_M_contig94.17439.1 ID=prot_E-siliculosus-1a_M_contig94.17439.1|Name=mRNA_E-siliculosus-1a_M_contig94.17439.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=458bp
QEDKQLSVRFSGSVDSGPRISSSDDDGESEWEAFDAAFRGQTASMKEPAA
TATPARVTLARRPFKENQRAANNGRARTHRSDSAASSSAEDLRVLPPTRA
GLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHHQVAGSATSHLHENDFN
NKYRTHHHQTGAVLQPARLDSALATPNSSSPSVLNDTSRAFAWSVLLHGC
LCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAA
LAREGFLLLAASLTLAVPFATSFTVYGEVVVDRALDEDEASWDVRPVPTV
LGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELPGGGYGLRTTGPGG
YAEGFRPANYDDGGGGGGGGGRSNKPPSILYVGAIAAQSMDADRMGVGIL
HPPEELGLRLRQAAAHGKRAVVSAYRRLANSATATYHRRLPTLSSTVVTR
LGNTPSG*
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mRNA from alignment at E-siliculosus-1a_M_contig94:469820..471193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17439.1 ID=mRNA_E-siliculosus-1a_M_contig94.17439.1|Name=mRNA_E-siliculosus-1a_M_contig94.17439.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:469820..471193- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAGGAAGACAAACAACTCAGCGTCCGGTTTAGCGGTTCCGTCGACAGCGG
CCCACGCATCAGCAGTAGCGATGACGATGGCGAGAGCGAATGGGAGGCGT
TTGATGCCGCTTTCCGAGGCCAAACGGCGTCAATGAAAGAACCTGCGGCA
ACGGCAACGCCAGCACGAGTGACCTTGGCGCGTCGGCCTTTCAAGGAAAA
TCAGAGAGCAGCCAACAACGGAAGAGCGAGGACACACCGTAGCGATAGTG
CTGCAAGTAGCTCTGCAGAAGACCTGCGCGTTTTGCCCCCAACGAGGGCA
GGCCTTCACGGAAGTAACTCTTCGCCAGCAGGGCAGCTTGCACCTGGCTA
TGACGGCGATAACGATCATGTTGGTACCAGTCAGAGACCTTATCGCCACC
ACCAGGTGGCCGGAAGTGCAACCAGCCATTTGCACGAGAACGACTTCAAC
AACAAGTATCGCACCCACCACCACCAAACCGGGGCCGTTCTACAACCCGC
ACGGCTCGATTCGGCGCTAGCAACCCCGAACAGCAGCTCCCCTTCCGTTC
TTAATGATACGTCGCGTGCTTTTGCGTGGTCCGTGCTCTTGCACGGCTGT
CTATGCGAAGCCCCGCTCGCCGTGCTCGAGGGCCTCGCCCGAGGCCCGCT
GTACCTCGTCGCCGCGGCGTGGGTCGCGCTCGTCGCCTCCGTCGGCGCAT
CCGGGCACGCCCACCACCACCGCGCCGGGCTCCGGAAGCACGCCGCCGCG
CTGGCGCGAGAGGGGTTCCTCCTCCTCGCGGCATCACTCACCCTGGCCGT
GCCCTTCGCGACAAGCTTCACGGTCTACGGCGAGGTGGTGGTGGACAGGG
CTTTGGACGAGGACGAGGCGTCGTGGGACGTCCGGCCGGTCCCGACGGTG
CTCGGCGCGGTCGACCCCCTACGGTTCTGCGTGTTCGCCTTCGGGCAGGC
AGGGGAGCTCGCGGCCAACGGCCGGCCGGAGCCCTTGCAACAACCGTTTT
CTGAGCTTCCCGGTGGTGGTTACGGCCTACGCACTACCGGTCCGGGTGGT
TACGCGGAGGGTTTTAGACCGGCCAACTACGACGACGGCGGCGGCGGGGG
CGGCGGCGGCGGCAGGTCGAACAAGCCGCCTTCCATTCTTTACGTTGGAG
CCATCGCGGCGCAATCGATGGACGCCGATCGGATGGGAGTGGGGATACTA
CATCCCCCCGAGGAGCTCGGGCTAAGGCTCCGCCAGGCGGCCGCCCACGG
GAAACGGGCCGTCGTGTCGGCCTACCGGCGTCTCGCGAACAGCGCGACAG
CGACCTATCATCGGCGACTTCCGACGTTAAGCAGCACCGTTGTGACAAGG
CTGGGAAATACGCCGTCGGGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:469820..471193-

>mRNA_E-siliculosus-1a_M_contig94.17439.1 ID=mRNA_E-siliculosus-1a_M_contig94.17439.1|Name=mRNA_E-siliculosus-1a_M_contig94.17439.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2748bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:469820..471193- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAGGAAGACAAACAACTCAGCGTCCGGTTTAGCGGTTCCGTCGACAGCGG
CCCACGCATCAGCAGTAGCGATGACGATGGCGAGAGCGAATGGGAGGCGT
TTGATGCCGCTTTCCGAGGCCAAACGGCGTCAATGAAAGAACCTGCGGCA
ACGGCAACGCCAGCACGAGTGACCTTGGCGCGTCGGCCTTTCAAGGAAAA
TCAGAGAGCAGCCAACAACGGAAGAGCGAGGACACACCGTAGCGATAGTG
CTGCAAGTAGCTCTGCAGAAGACCTGCGCGTTTTGCCCCCAACGAGGGCA
GGCCTTCACGGAAGTAACTCTTCGCCAGCAGGGCAGCTTGCACCTGGCTA
TGACGGCGATAACGATCATGTTGGTACCAGTCAGAGACCTTATCGCCACC
ACCAGGTGGCCGGAAGTGCAACCAGCCATTTGCACGAGAACGACTTCAAC
AACAAGTATCGCACCCACCACCACCAAACCGGGGCCGTTCTACAACCCGC
ACGGCTCGATTCGGCGCTAGCAACCCCGAACAGCAGCTCCCCTTCCGTTC
TTAATGATACGTCGCGTGCTTTTGCGTGGTCCGTGCTCTTGCACGGCTGT
CTATGCGAAGCCCCGCTCGCCGTGCTCGAGGGCCTCGCCCGAGGCCCGCT
GTACCTCGTCGCCGCGGCGTGGGTCGCGCTCGTCGCCTCCGTCGGCGCAT
CCGGGCACGCCCACCACCACCGCGCCGGGCTCCGGAAGCACGCCGCCGCG
CTGGCGCGAGAGGGGTTCCTCCTCCTCGCGGCATCACTCACCCTGGCCGT
GCCCTTCGCGACAAGCTTCACGGTCTACGGCGAGGTGGTGGTGGACAGGG
CTTTGGACGAGGACGAGGCGTCGTGGGACGTCCGGCCGGTCCCGACGGTG
CTCGGCGCGGTCGACCCCCTACGGTTCTGCGTGTTCGCCTTCGGGCAGGC
AGGGGAGCTCGCGGCCAACGGCCGGCCGGAGCCCTTGCAACAACCGTTTT
CTGAGCTTCCCGGTGGTGGTTACGGCCTACGCACTACCGGTCCGGGTGGT
TACGCGGAGGGTTTTAGACCGGCCAACTACGACGACGGCGGCGGCGGGGG
CGGCGGCGGCGGCAGGTCGAACAAGCCGCCTTCCATTCTTTACGTTGGAG
CCATCGCGGCGCAATCGATGGACGCCGATCGGATGGGAGTGGGGATACTA
CATCCCCCCGAGGAGCTCGGGCTAAGGCTCCGCCAGGCGGCCGCCCACGG
GAAACGGGCCGTCGTGTCGGCCTACCGGCGTCTCGCGAACAGCGCGACAG
CGACCTATCATCGGCGACTTCCGACGTTAAGCAGCACCGTTGTGACAAGG
CTGGGAAATACGCCGTCGGGGTAACAGGAAGACAAACAACTCAGCGTCCG
GTTTAGCGGTTCCGTCGACAGCGGCCCACGCATCAGCAGTAGCGATGACG
ATGGCGAGAGCGAATGGGAGGCGTTTGATGCCGCTTTCCGAGGCCAAACG
GCGTCAATGAAAGAACCTGCGGCAACGGCAACGCCAGCACGAGTGACCTT
GGCGCGTCGGCCTTTCAAGGAAAATCAGAGAGCAGCCAACAACGGAAGAG
CGAGGACACACCGTAGCGATAGTGCTGCAAGTAGCTCTGCAGAAGACCTG
CGCGTTTTGCCCCCAACGAGGGCAGGCCTTCACGGAAGTAACTCTTCGCC
AGCAGGGCAGCTTGCACCTGGCTATGACGGCGATAACGATCATGTTGGTA
CCAGTCAGAGACCTTATCGCCACCACCAGGTGGCCGGAAGTGCAACCAGC
CATTTGCACGAGAACGACTTCAACAACAAGTATCGCACCCACCACCACCA
AACCGGGGCCGTTCTACAACCCGCACGGCTCGATTCGGCGCTAGCAACCC
CGAACAGCAGCTCCCCTTCCGTTCTTAATGATACGTCGCGTGCTTTTGCG
TGGTCCGTGCTCTTGCACGGCTGTCTATGCGAAGCCCCGCTCGCCGTGCT
CGAGGGCCTCGCCCGAGGCCCGCTGTACCTCGTCGCCGCGGCGTGGGTCG
CGCTCGTCGCCTCCGTCGGCGCATCCGGGCACGCCCACCACCACCGCGCC
GGGCTCCGGAAGCACGCCGCCGCGCTGGCGCGAGAGGGGTTCCTCCTCCT
CGCGGCATCACTCACCCTGGCCGTGCCCTTCGCGACAAGCTTCACGGTCT
ACGGCGAGGTGGTGGTGGACAGGGCTTTGGACGAGGACGAGGCGTCGTGG
GACGTCCGGCCGGTCCCGACGGTGCTCGGCGCGGTCGACCCCCTACGGTT
CTGCGTGTTCGCCTTCGGGCAGGCAGGGGAGCTCGCGGCCAACGGCCGGC
CGGAGCCCTTGCAACAACCGTTTTCTGAGCTTCCCGGTGGTGGTTACGGC
CTACGCACTACCGGTCCGGGTGGTTACGCGGAGGGTTTTAGACCGGCCAA
CTACGACGACGGCGGCGGCGGGGGCGGCGGCGGCGGCAGGTCGAACAAGC
CGCCTTCCATTCTTTACGTTGGAGCCATCGCGGCGCAATCGATGGACGCC
GATCGGATGGGAGTGGGGATACTACATCCCCCCGAGGAGCTCGGGCTAAG
GCTCCGCCAGGCGGCCGCCCACGGGAAACGGGCCGTCGTGTCGGCCTACC
GGCGTCTCGCGAACAGCGCGACAGCGACCTATCATCGGCGACTTCCGACG
TTAAGCAGCACCGTTGTGACAAGGCTGGGAAATACGCCGTCGGGGTAA
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