mRNA_E-siliculosus-1a_M_contig94.17427.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17427.1 vs. uniprot
Match: D8LL17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL17_ECTSI) HSP 1 Score: 1894 bits (4906), Expect = 0.000e+0 Identity = 1041/1106 (94.12%), Postives = 1056/1106 (95.48%), Query Frame = 3
Query: 150 MTAAATELFPHDVPVLRTSLVRHGLVDLSTSPRARKTPAGPASSEDLAAGDRGEEQWTKAAAAGGNSGFQALIGVNSVVVGHVRAAEELRASLLSPPSPRDLQKIRAPGTPTRQAEQPKSEEERLRRRSVSLRTDSPSAQAAASSRRQRVGSAASIAATLAMAAVRRGDRPYYVGAAGGASRGSPEQTPQPTEGVSMANLVDIAVSLFGSGDGAGGRGGRHSIDGNGSSKSSRVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWRQSLPRKDCALVSELMWRTAQLRKAGLVSSAERHSIAGLVLQRMAWEEGTSRAPAPLLATTPPVDSSLESAASALLDSLVLEAKGLRKAIDVRCLHARTTVETVEVPSVWGPTSSEVASSDAKAAPPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGELSELRQELLVMWPPIADLPFPAKRSSASXXXXXXXXXXXXXXXXX-VVRLEAFLDGALALLGMYVSIDPRCSGALHIVQDFLGRPEDLFSADLALSPALRDQKRAELLLYRLLNQADSPASRMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRCSPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASLQLNACCDNGDASTDAADSSCNGRSGSSGALSVDSRRASLKLYSREDGKGEAGEEDGEEGSVRAEGATAPTHGTLCPEEGEFGLRERDSNGLRLGRRPDRQTRAVSDSFTGDGGRATNDVASDSDGPSSSPALSLADEDQRLNVVQELVEDELCWQAQCVQDGDIATEEVDREALRPNFNSSRSWSALSTSHDISPTPAKSSTSSWDSIGSLDEGAAPGESXXXXXXXXXXXXXXXEVAPPATQPSDQAMGADDFLPLFALVLVHSAPLDLLLPQTMLTHLMDLDGSLSEAGYLVATLEAAVSFITQVHASSLSADGNQDSSP 3464
MTAAATELFPHDVPVLRTSLVRHGLVDLSTSPRARK PAGPASS+DLAAGDRGEEQWTKAAAAGGNSGFQAL+GVNSVVVGHVRAAEELRASL SPPSPRDLQKIRAPGTPTR+ EQPKS EERLR+RSVSLRTDSPSAQAAASSRRQR GSAASIAATLAMAAVRRGDRPYYVGAAGGASRGSPEQTPQPTEGVSMANL+DIAVSLFGSGDGAGGRGGRHSIDG+GSSKSS VVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWRQSLPRKDCALVSELMWRTAQLRKAG SAERHSIAGLVLQRMAWEEGTSRA APLLATTPPVDSSLESAASALLDSLVLEAKGLRKAIDVRCLH RT VETVEVPSVWGPTSSEVASSDAKAAPPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYG+LS LRQELL MWPPIADLPFPAKRSS S VVRLEAFLDGAL+LLGMYVSIDPRCSGALHIVQDFLGRPEDLF+ADLALSPALRDQKRAELLLYRLLNQADSPA+RMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALR SPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASLQLNACCDNGDASTDA DSSCNGRSGSSGALSVDSRRASLKLYSREDGKGEAGEEDGEEGSVRAEGATAPTHGTLCPEEGEFG+RERDSNGLRLG RPDRQTRAVSDSFTGDGGRATNDVASDSDGPSS+PALSLADE+QRLNVVQELVED+LCWQAQCVQD DIATEEVDREALRPNFNSSRSWSALSTSHDISPT AKSSTSSWDSIG L+EGAAPG XXXXXXXXXXXXXXX SDQAMGADDFLPLFALVLVHSAPLDLLLPQTMLTHLMDLDGSLSEAGYLVATLEAAVSFITQVHASSLSADGNQDSSP
Sbjct: 1 MTAAATELFPHDVPVLRTSLVRHGLVDLSTSPRARKAPAGPASSQDLAAGDRGEEQWTKAAAAGGNSGFQALVGVNSVVVGHVRAAEELRASLRSPPSPRDLQKIRAPGTPTRRGEQPKSAEERLRKRSVSLRTDSPSAQAAASSRRQRAGSAASIAATLAMAAVRRGDRPYYVGAAGGASRGSPEQTPQPTEGVSMANLLDIAVSLFGSGDGAGGRGGRHSIDGDGSSKSSGVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWRQSLPRKDCALVSELMWRTAQLRKAG---SAERHSIAGLVLQRMAWEEGTSRALAPLLATTPPVDSSLESAASALLDSLVLEAKGLRKAIDVRCLHTRTIVETVEVPSVWGPTSSEVASSDAKAAPPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGDLSALRQELLAMWPPIADLPFPAKRSSVSRAAAAETAETEETVVEERVVRLEAFLDGALSLLGMYVSIDPRCSGALHIVQDFLGRPEDLFNADLALSPALRDQKRAELLLYRLLNQADSPAARMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASLQLNACCDNGDASTDATDSSCNGRSGSSGALSVDSRRASLKLYSREDGKGEAGEEDGEEGSVRAEGATAPTHGTLCPEEGEFGIRERDSNGLRLGGRPDRQTRAVSDSFTGDGGRATNDVASDSDGPSSAPALSLADEEQRLNVVQELVEDDLCWQAQCVQDEDIATEEVDREALRPNFNSSRSWSALSTSHDISPTAAKSSTSSWDSIGGLNEGAAPGXXXXXXXXXXXXXXXXXXXXXXXXXXSDQAMGADDFLPLFALVLVHSAPLDLLLPQTMLTHLMDLDGSLSEAGYLVATLEAAVSFITQVHASSLSADGNQDSSP 1103
BLAST of mRNA_E-siliculosus-1a_M_contig94.17427.1 vs. uniprot
Match: A0A7S3H9E4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9E4_9STRA) HSP 1 Score: 136 bits (343), Expect = 7.370e-29 Identity = 152/569 (26.71%), Postives = 247/569 (43.41%), Query Frame = 3
Query: 864 KKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRC---VRSKSWR------QSLPRKDCALVSELMWRTAQLRKAGLVSSAERHSIAGLVLQRMAWEEGTSRAPAPLLATTPPVDSSLESAASALLDSL-----VLEAKGLRKAIDVRCLHARTTVETVEVPSVWGPTSSEVASSDAKAAPPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGELSELRQELLVMWPPIADLPFPAKRSSASXXXXXXXXXXXXXXXXXVVRLEAFLDGALALLGMYVSIDPRCSGALHIVQDFLGRPEDLFSADLALSPALRDQKRAELLLYRLLNQADSPASR--MKHLLMRDFES--DTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETRE-----AIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRCSPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASLQ 2501
KK+ ++V V G + TLG+ VK+L + V +++ G E AGI +GDVI G+N+ P +G + L +K + R + + WR ++P E++ + L ++ + S ER + ++L M ++ RA T+ ++ S +A + + L +++AKGLR A+ VR +H ++ +TV +V+RVEDV +G QW+V Y + L +ELL M ++ FP KR S +V LE ++ L +L +Y ++D S AL +Q FLG L D PAL DQ+ EL+ Y+ LN S A + ++ + D + + A ++ A L ++ FV H Q+ T E + VRK +RRQVE +LYLPLRR +++ + + + ++ L+RAI L+ +PP F LE A+ VK + + LP DQ L +AA + LH Q
Sbjct: 120 KKQATGSIYSVVVDLGKTGTLGIGVKDLADNVLAVSMLKR-ENCCPGAGEDAGIRLGDVIYGVNFIPTREG----------SKTLISIIKKETGRGKTHIHIQGWRCHQLCSDAIPGYHFPRADEILVQAYSLVQSKVFSDWERWNFIEILLGHM-LDDLKLRASGDDGDTSGLLEPSQGAARAKQMQVLDLERNIMQAKGLRTALCVRIVHTKSHGDTVV-----------------------------------YVLRVEDVQSGLQWVVQRRYSDFFALNEELLDMTHFTKEVEFPRKRLSIRNTAKLVENR--------IVALEQYMRRMLHILTLYATMDSSASRALRHLQTFLGVDNYL---DCVHPPALDDQRFIELMAYQFLNDFGSEACQQCVRFITSVDLDGMVEIGTADGYVPVLNHARDALAEVEQFVQQLHMAQMIQTLQTRREDLNEDQLRSFVRKCIRRQVEAALYLPLRRTVFRIVFTFLAEKSKLLQRAITMLQGAPPKFFMLEPFVTRATSLPRTVK-AFRRVIQAYLPADQGQLLIQAATAVMELHKECQ 629
BLAST of mRNA_E-siliculosus-1a_M_contig94.17427.1 vs. uniprot
Match: A0A7S1U3A3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3A3_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 7.990e-6 Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 3
Query: 3219 ATQPSDQ---AMGADDFLPLFALVLVHSAPLDLLLPQTMLTHLMDLDGSLSEAGYLVATLEAAVSFITQV 3419
AT P D AM AD+FLPLFA VLVH+ P LLL Q ++ L+D D ++ E GY ATL+A V + Q+
Sbjct: 148 ATSPGDGGLGAMSADEFLPLFAYVLVHARPRRLLLAQLLVPALLDPDDAVGERGYHCATLQAGVQLVLQL 217 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17427.1 >prot_E-siliculosus-1a_M_contig94.17427.1 ID=prot_E-siliculosus-1a_M_contig94.17427.1|Name=mRNA_E-siliculosus-1a_M_contig94.17427.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1106bp MTAAATELFPHDVPVLRTSLVRHGLVDLSTSPRARKTPAGPASSEDLAAGback to top mRNA from alignment at E-siliculosus-1a_M_contig94:331348..341997+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17427.1 ID=mRNA_E-siliculosus-1a_M_contig94.17427.1|Name=mRNA_E-siliculosus-1a_M_contig94.17427.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=10650bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:331348..341997+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:331348..341997+ >mRNA_E-siliculosus-1a_M_contig94.17427.1 ID=mRNA_E-siliculosus-1a_M_contig94.17427.1|Name=mRNA_E-siliculosus-1a_M_contig94.17427.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=6636bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:331348..341997+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |