mRNA_E-siliculosus-1a_M_contig94.17425.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17425.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17425.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:304900..307365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size2025
Model size2025
Exons2
Ec32 orthologEc-27_000740.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936498.2649794-CDS-E-siliculosus-1a_M_contig94:304899..3063181622936498.2649794-CDS-E-siliculosus-1a_M_contig94:304899..306318Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 304900..306318 +
1696251105.72389-CDS-E-siliculosus-1a_M_contig94:304899..3063181696251105.72389-CDS-E-siliculosus-1a_M_contig94:304899..306318Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 304900..306318 +
1622936498.2836454-CDS-E-siliculosus-1a_M_contig94:306759..3073651622936498.2836454-CDS-E-siliculosus-1a_M_contig94:306759..307365Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 306760..307365 +
1696251105.7327244-CDS-E-siliculosus-1a_M_contig94:306759..3073651696251105.7327244-CDS-E-siliculosus-1a_M_contig94:306759..307365Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 306760..307365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17425.1prot_E-siliculosus-1a_M_contig94.17425.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 304900..307365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17425.1

>prot_E-siliculosus-1a_M_contig94.17425.1 ID=prot_E-siliculosus-1a_M_contig94.17425.1|Name=mRNA_E-siliculosus-1a_M_contig94.17425.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=675bp
MTGGGSGYHDNMPRDVRVTARFPDAAITNKPHRGSSTSSSESTNKGSGAS
TETLSTHGNGSESDVLGARLVRNNLFPDTGTASLKRESRTAIQSTGGSLS
SPSRCGDDWSPRPAQDDQVVHSQLEKEKDEAVEFHDEDTAADGNSTKTDG
GGSRTAHSSHYGSKADHDVNGSDLSRSTRGTFDTVSDLSCSGIFAGLSAA
GDDQERAQDSSSGSPDLARLAASPSGDDQDSDDIEDSHITHLVQDRRRWQ
LRAFEAEYELASMRSFRAHLDSGGDDTRGAGSRPVESTEHQGSCSATTQA
SANSREQLFSGVPPIEVDHESNGQWQTQAVNESSSSASSCSTGRLSVEAT
RPVEDVLSAADEAQLLAAGSVESNHSAPSRTGCEATSDSNDLSQHVGSDD
DGGHGKFLGVVDNDDEEENIRAGSHRLLREEIVHLKENLRQAELRQAAAE
ATIASVTQRARAAEVSREVKEIQIRNLEIRLARRTNNDNNHQQACVRWRG
RQLSGGSENANVSTNLDFSRSRHEVFPMKEEEEEHLSSPCEPVQNNHGCP
PDMISTDELRRSCTSADRTIHEPSGPDLLSAKRESARRAMHIFRQSCVDI
GARATRAGDMVSAAAAAVSETAKDVAHSATAAVGGENILGQHKGEHKAAD
RCSGVGTDGGPVEAYWGSDYCTSM*
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mRNA from alignment at E-siliculosus-1a_M_contig94:304900..307365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17425.1 ID=mRNA_E-siliculosus-1a_M_contig94.17425.1|Name=mRNA_E-siliculosus-1a_M_contig94.17425.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2466bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:304900..307365+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACCGGCGGTGGTAGTGGATACCATGATAATATGCCAAGGGACGTGCG
AGTGACCGCAAGATTCCCCGATGCAGCGATAACGAACAAACCACATCGGG
GCAGCAGCACCTCAAGCAGCGAGAGTACCAACAAGGGTAGTGGTGCTTCG
ACAGAGACCTTGTCGACCCATGGCAATGGCTCCGAGAGCGATGTTTTGGG
GGCGCGCTTGGTCCGCAATAACCTCTTCCCTGATACTGGCACTGCAAGCC
TGAAACGTGAGAGTCGCACGGCCATACAAAGTACTGGAGGAAGCCTATCG
TCGCCGTCGCGGTGCGGTGACGATTGGTCCCCAAGACCTGCCCAAGACGA
CCAAGTAGTGCACTCGCAGCTTGAAAAAGAAAAGGATGAGGCCGTCGAAT
TTCACGATGAAGACACCGCCGCGGATGGTAACTCGACGAAAACCGACGGC
GGCGGAAGCCGTACAGCGCACAGTTCCCACTATGGTTCGAAGGCTGATCA
CGACGTGAATGGCAGTGATTTGTCTCGAAGCACACGGGGGACCTTTGATA
CGGTTTCTGATCTCTCTTGCTCTGGGATTTTCGCCGGACTTAGCGCTGCG
GGTGACGACCAAGAGAGAGCCCAGGACTCCTCCAGCGGGTCGCCTGACCT
TGCTCGTTTGGCGGCTTCTCCTAGTGGTGATGATCAAGACAGTGACGACA
TTGAGGACAGCCACATCACTCATCTTGTCCAAGATAGACGTCGGTGGCAG
CTTCGAGCTTTCGAAGCCGAGTACGAGCTGGCCTCGATGCGATCCTTCCG
TGCTCATTTGGATAGCGGCGGCGACGACACCAGGGGAGCAGGATCGCGAC
CAGTAGAATCAACAGAACACCAAGGCTCTTGCTCCGCCACCACGCAAGCA
TCTGCAAACTCCAGGGAACAGCTTTTTTCGGGAGTGCCACCGATTGAGGT
CGATCATGAGTCTAACGGCCAATGGCAAACACAGGCAGTGAACGAATCGT
CTTCCTCAGCCTCTTCATGCTCCACAGGCAGGCTAAGCGTGGAGGCAACT
CGGCCAGTGGAGGACGTCTTGAGTGCCGCCGACGAAGCCCAGCTCTTAGC
GGCAGGGTCGGTCGAAAGCAACCACTCCGCACCGAGCAGAACCGGGTGCG
AAGCAACCAGTGATTCAAACGACTTATCTCAGCATGTCGGTAGCGATGAT
GATGGAGGCCATGGCAAATTCTTGGGCGTTGTCGACAACGATGATGAAGA
AGAAAATATCAGGGCGGGGAGTCACCGTCTACTACGGGAGGAAATCGTCC
ACTTGAAGGAGAATCTTCGACAAGCGGAACTTCGGCAGGCGGCCGCAGAG
GCTACCATTGCGAGTGTCACGCAGCGAGCGCGGGCGGCCGAGGTGTCTCG
TGAGGTCAAAGAAATCCAGGTCAGAAACTGTAAGAGGTTCAATAGGGGTC
GTGGTGATAATGTGCCTTTGACGTGAATGTGGGGCAAGCAGGACTGCAAT
ACGTTTCAAAGGTGCCAAACCTGTTCGTGTCTGCGAGCACTTCCTTTCCT
CGCGTTTGCGAACGTACCCACAACGTCGATGTCTTACCGAAGTTGTTGAT
ATGTAACGGTCCCCATTCCTCTGCTGGTTCGACCACGGGCTAGGTGAGGG
TTGGTTTATGTTTTTTGTACTCGTGCGATGCAAATCTGGTAGACTATATC
CAACTACACTCTATCGTGTAGTTCATTGACCGATCTATTATGCATCGATC
CAGTCTTATATTTTTACGTCATTGTCTCCAATTCAAGCAATGAACCCCTT
GTACAATCGGCGCCACCACTCTGTGTCCGAAAATATGCCGTGCTACATGC
TGCCAAACAGATCCGAAACCTCGAGATCAGGCTCGCCAGGCGCACGAATA
ACGACAACAACCACCAACAGGCATGCGTGCGATGGAGGGGGAGGCAACTC
TCGGGTGGCAGCGAGAACGCGAATGTTAGCACGAACCTCGATTTCTCCCG
GTCACGACACGAGGTATTTCCGATGAAAGAAGAGGAGGAGGAACACCTAT
CGTCGCCATGTGAGCCAGTTCAAAACAACCACGGGTGTCCCCCTGATATG
ATATCGACTGATGAGCTTCGTCGCAGCTGCACCTCCGCCGACCGCACCAT
TCATGAACCTTCTGGACCCGACCTGCTGTCCGCAAAAAGGGAAAGTGCTC
GGCGGGCAATGCACATTTTCCGCCAGAGCTGTGTTGATATCGGGGCACGA
GCAACGAGGGCAGGTGATATGGTATCGGCAGCAGCGGCAGCTGTAAGCGA
GACCGCCAAGGACGTCGCGCACTCCGCTACGGCGGCAGTGGGAGGAGAAA
ATATTCTTGGACAGCACAAGGGGGAACACAAGGCAGCGGATAGATGCTCT
GGGGTCGGAACCGATGGAGGTCCTGTCGAGGCTTACTGGGGTAGCGACTA
TTGCACATCGATGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:304900..307365+

>mRNA_E-siliculosus-1a_M_contig94.17425.1 ID=mRNA_E-siliculosus-1a_M_contig94.17425.1|Name=mRNA_E-siliculosus-1a_M_contig94.17425.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4050bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:304900..307365+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACCGGCGGTGGTAGTGGATACCATGATAATATGCCAAGGGACGTGCG
AGTGACCGCAAGATTCCCCGATGCAGCGATAACGAACAAACCACATCGGG
GCAGCAGCACCTCAAGCAGCGAGAGTACCAACAAGGGTAGTGGTGCTTCG
ACAGAGACCTTGTCGACCCATGGCAATGGCTCCGAGAGCGATGTTTTGGG
GGCGCGCTTGGTCCGCAATAACCTCTTCCCTGATACTGGCACTGCAAGCC
TGAAACGTGAGAGTCGCACGGCCATACAAAGTACTGGAGGAAGCCTATCG
TCGCCGTCGCGGTGCGGTGACGATTGGTCCCCAAGACCTGCCCAAGACGA
CCAAGTAGTGCACTCGCAGCTTGAAAAAGAAAAGGATGAGGCCGTCGAAT
TTCACGATGAAGACACCGCCGCGGATGGTAACTCGACGAAAACCGACGGC
GGCGGAAGCCGTACAGCGCACAGTTCCCACTATGGTTCGAAGGCTGATCA
CGACGTGAATGGCAGTGATTTGTCTCGAAGCACACGGGGGACCTTTGATA
CGGTTTCTGATCTCTCTTGCTCTGGGATTTTCGCCGGACTTAGCGCTGCG
GGTGACGACCAAGAGAGAGCCCAGGACTCCTCCAGCGGGTCGCCTGACCT
TGCTCGTTTGGCGGCTTCTCCTAGTGGTGATGATCAAGACAGTGACGACA
TTGAGGACAGCCACATCACTCATCTTGTCCAAGATAGACGTCGGTGGCAG
CTTCGAGCTTTCGAAGCCGAGTACGAGCTGGCCTCGATGCGATCCTTCCG
TGCTCATTTGGATAGCGGCGGCGACGACACCAGGGGAGCAGGATCGCGAC
CAGTAGAATCAACAGAACACCAAGGCTCTTGCTCCGCCACCACGCAAGCA
TCTGCAAACTCCAGGGAACAGCTTTTTTCGGGAGTGCCACCGATTGAGGT
CGATCATGAGTCTAACGGCCAATGGCAAACACAGGCAGTGAACGAATCGT
CTTCCTCAGCCTCTTCATGCTCCACAGGCAGGCTAAGCGTGGAGGCAACT
CGGCCAGTGGAGGACGTCTTGAGTGCCGCCGACGAAGCCCAGCTCTTAGC
GGCAGGGTCGGTCGAAAGCAACCACTCCGCACCGAGCAGAACCGGGTGCG
AAGCAACCAGTGATTCAAACGACTTATCTCAGCATGTCGGTAGCGATGAT
GATGGAGGCCATGGCAAATTCTTGGGCGTTGTCGACAACGATGATGAAGA
AGAAAATATCAGGGCGGGGAGTCACCGTCTACTACGGGAGGAAATCGTCC
ACTTGAAGGAGAATCTTCGACAAGCGGAACTTCGGCAGGCGGCCGCAGAG
GCTACCATTGCGAGTGTCACGCAGCGAGCGCGGGCGGCCGAGGTGTCTCG
TGAGGTCAAAGAAATCCAGATGACCGGCGGTGGTAGTGGATACCATGATA
ATATGCCAAGGGACGTGCGAGTGACCGCAAGATTCCCCGATGCAGCGATA
ACGAACAAACCACATCGGGGCAGCAGCACCTCAAGCAGCGAGAGTACCAA
CAAGGGTAGTGGTGCTTCGACAGAGACCTTGTCGACCCATGGCAATGGCT
CCGAGAGCGATGTTTTGGGGGCGCGCTTGGTCCGCAATAACCTCTTCCCT
GATACTGGCACTGCAAGCCTGAAACGTGAGAGTCGCACGGCCATACAAAG
TACTGGAGGAAGCCTATCGTCGCCGTCGCGGTGCGGTGACGATTGGTCCC
CAAGACCTGCCCAAGACGACCAAGTAGTGCACTCGCAGCTTGAAAAAGAA
AAGGATGAGGCCGTCGAATTTCACGATGAAGACACCGCCGCGGATGGTAA
CTCGACGAAAACCGACGGCGGCGGAAGCCGTACAGCGCACAGTTCCCACT
ATGGTTCGAAGGCTGATCACGACGTGAATGGCAGTGATTTGTCTCGAAGC
ACACGGGGGACCTTTGATACGGTTTCTGATCTCTCTTGCTCTGGGATTTT
CGCCGGACTTAGCGCTGCGGGTGACGACCAAGAGAGAGCCCAGGACTCCT
CCAGCGGGTCGCCTGACCTTGCTCGTTTGGCGGCTTCTCCTAGTGGTGAT
GATCAAGACAGTGACGACATTGAGGACAGCCACATCACTCATCTTGTCCA
AGATAGACGTCGGTGGCAGCTTCGAGCTTTCGAAGCCGAGTACGAGCTGG
CCTCGATGCGATCCTTCCGTGCTCATTTGGATAGCGGCGGCGACGACACC
AGGGGAGCAGGATCGCGACCAGTAGAATCAACAGAACACCAAGGCTCTTG
CTCCGCCACCACGCAAGCATCTGCAAACTCCAGGGAACAGCTTTTTTCGG
GAGTGCCACCGATTGAGGTCGATCATGAGTCTAACGGCCAATGGCAAACA
CAGGCAGTGAACGAATCGTCTTCCTCAGCCTCTTCATGCTCCACAGGCAG
GCTAAGCGTGGAGGCAACTCGGCCAGTGGAGGACGTCTTGAGTGCCGCCG
ACGAAGCCCAGCTCTTAGCGGCAGGGTCGGTCGAAAGCAACCACTCCGCA
CCGAGCAGAACCGGGTGCGAAGCAACCAGTGATTCAAACGACTTATCTCA
GCATGTCGGTAGCGATGATGATGGAGGCCATGGCAAATTCTTGGGCGTTG
TCGACAACGATGATGAAGAAGAAAATATCAGGGCGGGGAGTCACCGTCTA
CTACGGGAGGAAATCGTCCACTTGAAGGAGAATCTTCGACAAGCGGAACT
TCGGCAGGCGGCCGCAGAGGCTACCATTGCGAGTGTCACGCAGCGAGCGC
GGGCGGCCGAGGTGTCTCGTGAGGTCAAAGAAATCCAGATCCGAAACCTC
GAGATCAGGCTCGCCAGGCGCACGAATAACGACAACAACCACCAACAGGC
ATGCGTGCGATGGAGGGGGAGGCAACTCTCGGGTGGCAGCGAGAACGCGA
ATGTTAGCACGAACCTCGATTTCTCCCGGTCACGACACGAGGTATTTCCG
ATGAAAGAAGAGGAGGAGGAACACCTATCGTCGCCATGTGAGCCAGTTCA
AAACAACCACGGGTGTCCCCCTGATATGATATCGACTGATGAGCTTCGTC
GCAGCTGCACCTCCGCCGACCGCACCATTCATGAACCTTCTGGACCCGAC
CTGCTGTCCGCAAAAAGGGAAAGTGCTCGGCGGGCAATGCACATTTTCCG
CCAGAGCTGTGTTGATATCGGGGCACGAGCAACGAGGGCAGGTGATATGG
TATCGGCAGCAGCGGCAGCTGTAAGCGAGACCGCCAAGGACGTCGCGCAC
TCCGCTACGGCGGCAGTGGGAGGAGAAAATATTCTTGGACAGCACAAGGG
GGAACACAAGGCAGCGGATAGATGCTCTGGGGTCGGAACCGATGGAGGTC
CTGTCGAGGCTTACTGGGGTAGCGACTATTGCACATCGATGTGAATCCGA
AACCTCGAGATCAGGCTCGCCAGGCGCACGAATAACGACAACAACCACCA
ACAGGCATGCGTGCGATGGAGGGGGAGGCAACTCTCGGGTGGCAGCGAGA
ACGCGAATGTTAGCACGAACCTCGATTTCTCCCGGTCACGACACGAGGTA
TTTCCGATGAAAGAAGAGGAGGAGGAACACCTATCGTCGCCATGTGAGCC
AGTTCAAAACAACCACGGGTGTCCCCCTGATATGATATCGACTGATGAGC
TTCGTCGCAGCTGCACCTCCGCCGACCGCACCATTCATGAACCTTCTGGA
CCCGACCTGCTGTCCGCAAAAAGGGAAAGTGCTCGGCGGGCAATGCACAT
TTTCCGCCAGAGCTGTGTTGATATCGGGGCACGAGCAACGAGGGCAGGTG
ATATGGTATCGGCAGCAGCGGCAGCTGTAAGCGAGACCGCCAAGGACGTC
GCGCACTCCGCTACGGCGGCAGTGGGAGGAGAAAATATTCTTGGACAGCA
CAAGGGGGAACACAAGGCAGCGGATAGATGCTCTGGGGTCGGAACCGATG
GAGGTCCTGTCGAGGCTTACTGGGGTAGCGACTATTGCACATCGATGTGA
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