mRNA_E-siliculosus-1a_M_contig94.17419.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17419.1 vs. uniprot
Match: D7FIQ7_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ7_ECTSI) HSP 1 Score: 1512 bits (3915), Expect = 0.000e+0 Identity = 895/971 (92.17%), Postives = 907/971 (93.41%), Query Frame = 1
Query: 43 MASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDDXXXXXXXXXXVLRGGRSSAGDGGDIFLGSLSPPALPQVTGTSAAGELVVDDGKAIADAFPADWLNDFEGLGLGVQGKTGSSAAPATAS-QPIHSSPQGQHPHQXXXXXXXXXXHQQHRDATIQNNETGEVLGEEPEILDNVDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNGRAAAASTDADELPLDWQGTLDMVGMAEAETDTKGTSALAAAPVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGGEGDGQAGQXXXDSGEHAAAAGQEHGQRRVLPAPLRTVEVYLRPDVTWDSVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIRDVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRAYGLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGGGNSFPPQNKGVDVDDENAFXXXXXXXXXXXXXXXXXXXXXXXX--SVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLVAVEGHREALIAALRDGAGGSAASSTSAGREFAARFRPMAKEAVLCQCKAVHAKRVGKLYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDLVTLVDRGGEEHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQLXXXXXXXXXXXXXXXXXXPTSAAAVDMAPPAASPHSRPGYPRPEESEVAERDTGASVGGGVVEGGAGRAMGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGSMMAMGIQAFLEESQKRS 2946
MASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDD VLRGGRSS G GGDIFLGSLSPPAL QVTGTSAAGEL+ DDGKAIADAFPADWLNDFEG+GLGVQGKT SSAA ATA+ QPIHSSPQGQ XXXXXXXXXX QHRDATIQNNETGEVLGEEP+ILDNVDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNG AAAASTDADELPLDWQGTLDMVGMAEAETDTKGTSALA APVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGG GDGQAGQ X+SGEHAAAAGQE GQR VLPAPLRTVEVYLRPDVTW+SVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIR+VLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRA GLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGG +SFPPQ KGVDVDDEN F XXXXXXXXXX SVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRL+AVEGHREALIAALRDGAGGSAASST AGREFAARFRPMAKEAVLCQCKAVHAKRVG+LYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDL+TLVDRGG+EHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQL XXXXXXXXXXXXXXXXX DMAPPAASPHSRPGYPRPEESE AERDTGASVGGGVVEGGAG AM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGSMMAMGIQAFLEESQKRS
Sbjct: 1 MASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDDTASGGSTTTSVLRGGRSSVGKGGDIFLGSLSPPALQQVTGTSAAGELLADDGKAIADAFPADWLNDFEGIGLGVQGKTDSSAASATATAQPIHSSPQGQXXXXXXXXXXXXXXXXQHRDATIQNNETGEVLGEEPQILDNVDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNGSAAAASTDADELPLDWQGTLDMVGMAEAETDTKGTSALAVAPVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGGGGDGQAGQGAXESGEHAAAAGQERGQRHVLPAPLRTVEVYLRPDVTWESVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIRNVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRACGLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGG-DSFPPQ-KGVDVDDENVFASGGXXXXXXXXXXDEGRGAKVGSGSSVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTPAGREFAARFRPMAKEAVLCQCKAVHAKRVGQLYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDLLTLVDRGGQEHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQLRXXXXXXXXXXXXXXXXXXXXXXXXDMAPPAASPHSRPGYPRPEESEFAERDTGASVGGGVVEGGAGGAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGSMMAMGIQAFLEESQKRS 969
BLAST of mRNA_E-siliculosus-1a_M_contig94.17419.1 vs. uniprot
Match: A0A7S2F8A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8A2_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.070e-5 Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1
Query: 1951 LIRATWEDVKEWCDEEAEARVRRKDAQVRDRLVAVEGHREALIAALRDGAGGSAASSTSAGREFAARFRPMAKEAVLCQCKAVHAK-----RVGKLYLTCNHVCFHS--SVLGFTSQRVLPLLTVATISHA 2322
++RA W + C+EEA AR+ RK V RL A+EG+R A+++ L + + + R F RFR +A EA+L C AV + R G++Y+T H+ F +L +Q +P T+ I A
Sbjct: 69 VVRALWRLLGSKCEEEARARMARKQKVVTQRLQAIEGYRSAVVSKLANRSQQNRTELIGVERAFRGRFR-VADEALLVDCAAVVTEADGKQRKGRVYVTMGHLWFDDPGGLLTSPTQTPIPFYTIHEIGKA 198 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17419.1 >prot_E-siliculosus-1a_M_contig94.17419.1 ID=prot_E-siliculosus-1a_M_contig94.17419.1|Name=mRNA_E-siliculosus-1a_M_contig94.17419.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=983bp HGHLFSRGVQGFAVMASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDDback to top mRNA from alignment at E-siliculosus-1a_M_contig94:244190..249918- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17419.1 ID=mRNA_E-siliculosus-1a_M_contig94.17419.1|Name=mRNA_E-siliculosus-1a_M_contig94.17419.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5729bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:244190..249918- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:244190..249918- >mRNA_E-siliculosus-1a_M_contig94.17419.1 ID=mRNA_E-siliculosus-1a_M_contig94.17419.1|Name=mRNA_E-siliculosus-1a_M_contig94.17419.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5898bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:244190..249918- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |