mRNA_E-siliculosus-1a_M_contig94.17403.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17403.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17403.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17403.1 vs. uniprot
Match: D7FIP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP0_ECTSI)

HSP 1 Score: 655 bits (1690), Expect = 5.710e-234
Identity = 335/351 (95.44%), Postives = 338/351 (96.30%), Query Frame = 2 
Query:   44 MADTNSQTNEWSSWSDLETRGGGEADLASLPAAVRAIVEECRAKSTNPPHPEQPAGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDPAQVLPPTMIGLPPELQRDLQGSNDGFCQWASDDIPEDHLFKLGEKLTEAFSGEPGGSRRGEGLPPDVIAEVASLSRTDWSVCLERYVDFRRCDPAAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKAPTSPETGTENSSASGRNGGEQAATSAGNDQRNTAALLAICRLAASVAASVRGDADPVEFRDKVSGSELRKLGALGKEAEVALAEAFFYGEGAGAVF 1096
            MADT SQ NE SSWSD ETRGGGEADL+SLPAAVRAIVEECRAKS NPP PEQ AGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDPAQVLPPTMIGLPPELQRDLQGSNDGFCQWASDDIPEDHLFKLGEKLTEAFSGEPGGSRR EGLPPDVIAEVASLSRTDWSVCLERYVDFRRCDP AIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKAPTS ETGT++SSASGRNGGEQAATSAGN QRNTAALLAICRLAASVAASVRGDADPV FRDKVSGSELRKLGALGKEAEVALAEAFFYGEGAGA F
Sbjct:    1 MADTTSQENECSSWSDFETRGGGEADLSSLPAAVRAIVEECRAKSANPPPPEQQAGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASLDGEHDCGPDSGLVLPAVYSMDPAQVLPPTMIGLPPELQRDLQGSNDGFCQWASDDIPEDHLFKLGEKLTEAFSGEPGGSRRAEGLPPDVIAEVASLSRTDWSVCLERYVDFRRCDPTAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKAPTSSETGTKDSSASGRNGGEQAATSAGNGQRNTAALLAICRLAASVAASVRGDADPVAFRDKVSGSELRKLGALGKEAEVALAEAFFYGEGAGAAF 351
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIP0_ECTSI5.710e-23495.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:113356..115978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1056
Model size1582
Exons5
Ec32 orthologEc-27_000480.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936492.5324478-UTR-E-siliculosus-1a_M_contig94:113355..1138381622936492.5324478-UTR-E-siliculosus-1a_M_contig94:113355..113838Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 113356..113838 -
1696251102.8364604-UTR-E-siliculosus-1a_M_contig94:113355..1138381696251102.8364604-UTR-E-siliculosus-1a_M_contig94:113355..113838Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 113356..113838 -
1622936492.6552858-UTR-E-siliculosus-1a_M_contig94:115935..1159781622936492.6552858-UTR-E-siliculosus-1a_M_contig94:115935..115978Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 115936..115978 -
1696251102.9074223-UTR-E-siliculosus-1a_M_contig94:115935..1159781696251102.9074223-UTR-E-siliculosus-1a_M_contig94:115935..115978Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 115936..115978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936492.553145-CDS-E-siliculosus-1a_M_contig94:113838..1142561622936492.553145-CDS-E-siliculosus-1a_M_contig94:113838..114256Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 113839..114256 -
1696251102.8459392-CDS-E-siliculosus-1a_M_contig94:113838..1142561696251102.8459392-CDS-E-siliculosus-1a_M_contig94:113838..114256Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 113839..114256 -
1622936492.5826857-CDS-E-siliculosus-1a_M_contig94:114515..1146821622936492.5826857-CDS-E-siliculosus-1a_M_contig94:114515..114682Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 114516..114682 -
1696251102.856036-CDS-E-siliculosus-1a_M_contig94:114515..1146821696251102.856036-CDS-E-siliculosus-1a_M_contig94:114515..114682Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 114516..114682 -
1622936492.6003854-CDS-E-siliculosus-1a_M_contig94:114860..1149591622936492.6003854-CDS-E-siliculosus-1a_M_contig94:114860..114959Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 114861..114959 -
1696251102.866014-CDS-E-siliculosus-1a_M_contig94:114860..1149591696251102.866014-CDS-E-siliculosus-1a_M_contig94:114860..114959Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 114861..114959 -
1622936492.6232011-CDS-E-siliculosus-1a_M_contig94:115392..1155091622936492.6232011-CDS-E-siliculosus-1a_M_contig94:115392..115509Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 115393..115509 -
1696251102.8754652-CDS-E-siliculosus-1a_M_contig94:115392..1155091696251102.8754652-CDS-E-siliculosus-1a_M_contig94:115392..115509Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 115393..115509 -
1622936492.639571-CDS-E-siliculosus-1a_M_contig94:115680..1159351622936492.639571-CDS-E-siliculosus-1a_M_contig94:115680..115935Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 115681..115935 -
1696251102.894009-CDS-E-siliculosus-1a_M_contig94:115680..1159351696251102.894009-CDS-E-siliculosus-1a_M_contig94:115680..115935Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 115681..115935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17403.1prot_E-siliculosus-1a_M_contig94.17403.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 113839..115935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17403.1

>prot_E-siliculosus-1a_M_contig94.17403.1 ID=prot_E-siliculosus-1a_M_contig94.17403.1|Name=mRNA_E-siliculosus-1a_M_contig94.17403.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=352bp
MADTNSQTNEWSSWSDLETRGGGEADLASLPAAVRAIVEECRAKSTNPPH
PEQPAGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEASL
DGEHDCGPDSGLVLPAVYSMDPAQVLPPTMIGLPPELQRDLQGSNDGFCQ
WASDDIPEDHLFKLGEKLTEAFSGEPGGSRRGEGLPPDVIAEVASLSRTD
WSVCLERYVDFRRCDPAAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLS
AAAKAPTSPETGTENSSASGRNGGEQAATSAGNDQRNTAALLAICRLAAS
VAASVRGDADPVEFRDKVSGSELRKLGALGKEAEVALAEAFFYGEGAGAV
F*
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mRNA from alignment at E-siliculosus-1a_M_contig94:113356..115978-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17403.1 ID=mRNA_E-siliculosus-1a_M_contig94.17403.1|Name=mRNA_E-siliculosus-1a_M_contig94.17403.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2623bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:113356..115978- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACGCACCGGCAGTGCCAGAGCACGGGAGCACGAATACAAAGCATGGCAG
ACACCAACTCTCAGACAAATGAGTGGTCTTCATGGTCGGACCTTGAAACT
AGAGGTGGGGGTGAGGCAGATCTGGCATCGCTGCCGGCGGCTGTGAGGGC
GATCGTCGAGGAGTGCAGGGCGAAGTCAACAAACCCGCCGCACCCTGAAC
AGCCGGCTGGGGAGGTCCTGCCGTACCCGTGTCGCATGTACGAGGAAAGT
ATTCCTGGCGAGGAAGGCATGCTACAGCTACAGTGGATGAGACTCGATGT
GAGTACATATATTGATCATTTGCGATCATGTTCGGTGGACTGCAGATCAA
CACCGACGGCTGTACCGGGGATATTCAAATTCAAATTTAAATCCTTGACG
TTCTGTTGATCATCTGTGTGTGCATGCGACTCTGGTCCCATGGGTCCATC
TGCTGCGTTCCATACACAGATGTCAAACATGGACAGCGAACGCTGCTGGG
GAGAGGCGAGCTTGGACGGAGAGCACGATTGCGGCCCAGATTCCGGCTTG
GTACTGCCCGCGGTGTATAGCATGGATCCAGCTCAGGTGCGCCTCACCAT
GCAAGCTGAATGTCCACACCAGCCCCCCTCACCGCAGGTTTTGGTGTCCG
GGGAAGGAGGTTCATCGATGTCTATGCATAGTTCGTAAGCAGTGGGAACT
AGAACAACAGAAATACCTTGCATTTCAGAGTCCTCGAAGAAACAGTGTTA
ATAAATTCAGTTCATACGAATGTAGAAAGTGTATGGCTTGGGTGAAGTTG
TATTGTTGTAGACATGTCAATGTACATCAGTTGTGGTTGAGAAGTACTCT
ACTGATTCCAGCAAGATATCTTCAGACACTACGAATGTATTCATCCTGTA
GACGAACAGTGGTTGTGTCATCTGTTTCACCCTCAGGTATTTAAGTAACA
TGTTTGCATCCACACCACCCAGAACCTGCTCCCTCGCGTAATAACTGGTT
GTCGGTTACGCTGCTACAGGTCTTGCCCCCAACGATGATCGGACTCCCGC
CAGAGCTACAGCGTGACTTACAAGGCAGCAACGACGGGTTTTGCCAATGG
GCTTCCGATGACATCCCGGTTAGGACGACGTCCGTGCGGTTGCGTGGTTG
TGGTTGTGGGCGGATTTTTGGTTATCAATCGTTGTCGCGCATTCTGTGTC
CGTGATGCGCAGCAGTCAACCAGCGTGGGCATCCCGTCTCACGACGTTCA
TAAGTCATGCTCGTTGTCTCTCGACCTCTCGACGCACGCCCAACAGGAGG
ACCATCTCTTTAAGCTTGGGGAAAAACTCACGGAGGCGTTTTCCGGCGAA
CCGGGCGGTAGCAGGCGAGGGGAGGGCTTGCCCCCAGACGTCATTGCGGA
AGTGGCATCGTTGTCCCGCACTGATTGGTCCGTCTGCCTCGAGCGCTACG
TTGACTTCCGAAGGTGGGCGAGCGAAGTGCACACGCCAGTAGAGCGTCTC
ACCCCCCTAAACACCTTGTGTTGACATGGCTCGTAGTGACCTGCCGCTTC
TGATGTGAGCGCGACCCCCAGGTCGTTGCCACGACTGCTTCACCTCGTAC
GATAGGGCACCACACACCACGTCTTGCTTCAAACGAAAAGATGGAACATG
CGATGACCTGAAAACCCTCGCGTTGCCTCTTTGTCATCCCATCCTCTCGA
CACCCGACACATACACACACAGGTGCGATCCCGCGGCGATCGCACAAGTC
CTCTTGGCTGCTTCTCCCCCTACCCTCGACTGCCTCCTGGGCACCGTGCT
GCCGGGGCTCGTCACCAAGATTTCATCCCTCAGCGCCGCTGCGAAGGCAC
CCACCTCCCCGGAGACAGGAACAGAAAACAGCAGCGCAAGCGGTCGGAAT
GGTGGAGAACAAGCCGCGACAAGTGCAGGCAATGATCAAAGGAACACTGC
TGCTCTGCTCGCAATCTGTCGACTGGCGGCCTCTGTTGCGGCCTCCGTGA
GGGGGGATGCAGATCCCGTGGAGTTTCGGGATAAAGTGTCAGGTAGCGAG
CTGCGGAAGCTGGGGGCGCTCGGGAAGGAGGCGGAGGTCGCGCTTGCGGA
GGCGTTTTTCTATGGGGAGGGGGCGGGAGCGGTGTTTTAGAGCCCCCGTT
GAAGGTCATGTCCCTGGATGGATGTTGCGTTTTTCATGGTCCATGAGACG
AGTCGGGGAAACTTTAACTTTTCTCGGTCAGCTTGGTCGGGGAGCGACTC
AGAGGATCACGCGTGATGGTGTCGTTCCTAGTCGGCACCTCCCACCTGGC
GGAGTCGAGCAGACCTGCGTTTAGCTACATTGTTAGCGACACTGTCGCTC
CATGTCAGAGCTATCACTGTCTGACAGTGCAAATGGGACCGTCACATCTG
AACCACGTCGTCGCCTTAATCTCTCTCCCCGACCGCGGAGACCCTAGGGA
GCATTCACTCACGCATAAAGCGGACCTGGGCGTGAAAGACCCACAACCGG
TGTATTACGCGTGTCGTGGTTGCGGATCCTTTATGCGGTTAAGTGTTCCT
GCGCAGAGGGGGTTTTGCACCGCTGTCAGTCTACTACAACTGAAGGGAAT
GGTCATGTGATATATCCACGTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:113356..115978-

>mRNA_E-siliculosus-1a_M_contig94.17403.1 ID=mRNA_E-siliculosus-1a_M_contig94.17403.1|Name=mRNA_E-siliculosus-1a_M_contig94.17403.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2112bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:113356..115978- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCAGACACCAACTCTCAGACAAATGAGTGGTCTTCATGGTCGGACCT
TGAAACTAGAGGTGGGGGTGAGGCAGATCTGGCATCGCTGCCGGCGGCTG
TGAGGGCGATCGTCGAGGAGTGCAGGGCGAAGTCAACAAACCCGCCGCAC
CCTGAACAGCCGGCTGGGGAGGTCCTGCCGTACCCGTGTCGCATGTACGA
GGAAAGTATTCCTGGCGAGGAAGGCATGCTACAGCTACAGTGGATGAGAC
TCGATATGGCAGACACCAACTCTCAGACAAATGAGTGGTCTTCATGGTCG
GACCTTGAAACTAGAGGTGGGGGTGAGGCAGATCTGGCATCGCTGCCGGC
GGCTGTGAGGGCGATCGTCGAGGAGTGCAGGGCGAAGTCAACAAACCCGC
CGCACCCTGAACAGCCGGCTGGGGAGGTCCTGCCGTACCCGTGTCGCATG
TACGAGGAAAGTATTCCTGGCGAGGAAGGCATGCTACAGCTACAGTGGAT
GAGACTCGATATGTCAAACATGGACAGCGAACGCTGCTGGGGAGAGGCGA
GCTTGGACGGAGAGCACGATTGCGGCCCAGATTCCGGCTTGGTACTGCCC
GCGGTGTATAGCATGGATCCAGCTCAGATGTCAAACATGGACAGCGAACG
CTGCTGGGGAGAGGCGAGCTTGGACGGAGAGCACGATTGCGGCCCAGATT
CCGGCTTGGTACTGCCCGCGGTGTATAGCATGGATCCAGCTCAGGTCTTG
CCCCCAACGATGATCGGACTCCCGCCAGAGCTACAGCGTGACTTACAAGG
CAGCAACGACGGGTTTTGCCAATGGGCTTCCGATGACATCCCGGTCTTGC
CCCCAACGATGATCGGACTCCCGCCAGAGCTACAGCGTGACTTACAAGGC
AGCAACGACGGGTTTTGCCAATGGGCTTCCGATGACATCCCGGAGGACCA
TCTCTTTAAGCTTGGGGAAAAACTCACGGAGGCGTTTTCCGGCGAACCGG
GCGGTAGCAGGCGAGGGGAGGGCTTGCCCCCAGACGTCATTGCGGAAGTG
GCATCGTTGTCCCGCACTGATTGGTCCGTCTGCCTCGAGCGCTACGTTGA
CTTCCGAAGGAGGACCATCTCTTTAAGCTTGGGGAAAAACTCACGGAGGC
GTTTTCCGGCGAACCGGGCGGTAGCAGGCGAGGGGAGGGCTTGCCCCCAG
ACGTCATTGCGGAAGTGGCATCGTTGTCCCGCACTGATTGGTCCGTCTGC
CTCGAGCGCTACGTTGACTTCCGAAGGTGCGATCCCGCGGCGATCGCACA
AGTCCTCTTGGCTGCTTCTCCCCCTACCCTCGACTGCCTCCTGGGCACCG
TGCTGCCGGGGCTCGTCACCAAGATTTCATCCCTCAGCGCCGCTGCGAAG
GCACCCACCTCCCCGGAGACAGGAACAGAAAACAGCAGCGCAAGCGGTCG
GAATGGTGGAGAACAAGCCGCGACAAGTGCAGGCAATGATCAAAGGAACA
CTGCTGCTCTGCTCGCAATCTGTCGACTGGCGGCCTCTGTTGCGGCCTCC
GTGAGGGGGGATGCAGATCCCGTGGAGTTTCGGGATAAAGTGTCAGGTAG
CGAGCTGCGGAAGCTGGGGGCGCTCGGGAAGGAGGCGGAGGTCGCGCTTG
CGGAGGCGTTTTTCTATGGGGAGGGGGCGGGAGCGGTGTTTTAGGTGCGA
TCCCGCGGCGATCGCACAAGTCCTCTTGGCTGCTTCTCCCCCTACCCTCG
ACTGCCTCCTGGGCACCGTGCTGCCGGGGCTCGTCACCAAGATTTCATCC
CTCAGCGCCGCTGCGAAGGCACCCACCTCCCCGGAGACAGGAACAGAAAA
CAGCAGCGCAAGCGGTCGGAATGGTGGAGAACAAGCCGCGACAAGTGCAG
GCAATGATCAAAGGAACACTGCTGCTCTGCTCGCAATCTGTCGACTGGCG
GCCTCTGTTGCGGCCTCCGTGAGGGGGGATGCAGATCCCGTGGAGTTTCG
GGATAAAGTGTCAGGTAGCGAGCTGCGGAAGCTGGGGGCGCTCGGGAAGG
AGGCGGAGGTCGCGCTTGCGGAGGCGTTTTTCTATGGGGAGGGGGCGGGA
GCGGTGTTTTAG
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