mRNA_E-siliculosus-1a_M_contig94.17456.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17456.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17456.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17456.1 vs. uniprot
Match: A0A6H5JPV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.400e-29
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:   46 VSQLLRAIYFAGLRAYGVKISRIVQCCGSEELERGPFHLGPWSGLLPAAGLLLSLSTTQFLTAPHLTATKCSQSYHKGLAARVAARIVQARLGEKG 333
            +S+ +RA+YFA L A  VK++RIVQ CGSE+L +GPFHL PW    P AG LL+L TT F ++PH TATK S+SYH GLAA+ AA+I +ARLGE G
Sbjct:  266 LSEFVRALYFAALDANDVKVTRIVQSCGSEDLAKGPFHLAPWLERFPVAGHLLNLPTTPFFSSPHRTATKTSKSYHPGLAAKAAAQIFRARLGEAG 361
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17456.1 vs. uniprot
Match: A0A6H5L509_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L509_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.320e-12
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 GSYSNPCAVDENVNSVSQLLRAIYFAGLRAYGVKISRIVQCCGSEELERGP 153
            GS++NP A DENV+SVSQLLRA+YFAGL AYGVKI+RIVQC  +   E+GP
Sbjct:  134 GSHANPFARDENVDSVSQLLRAMYFAGLHAYGVKITRIVQC-RARSGEKGP 183
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPV0_9PHAE1.400e-2960.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L509_9PHAE7.320e-1270.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:596154..596487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size333
Model size334
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936489.509542-CDS-E-siliculosus-1a_M_contig94:596153..5964861622936489.509542-CDS-E-siliculosus-1a_M_contig94:596153..596486Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 596154..596486 +
1696251101.5160303-CDS-E-siliculosus-1a_M_contig94:596153..5964861696251101.5160303-CDS-E-siliculosus-1a_M_contig94:596153..596486Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 596154..596486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17456.1prot_E-siliculosus-1a_M_contig94.17456.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 596154..596486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17456.1

>prot_E-siliculosus-1a_M_contig94.17456.1 ID=prot_E-siliculosus-1a_M_contig94.17456.1|Name=mRNA_E-siliculosus-1a_M_contig94.17456.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=111bp
GSYSNPCAVDENVNSVSQLLRAIYFAGLRAYGVKISRIVQCCGSEELERG
PFHLGPWSGLLPAAGLLLSLSTTQFLTAPHLTATKCSQSYHKGLAARVAA
RIVQARLGEKG
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mRNA from alignment at E-siliculosus-1a_M_contig94:596154..596487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17456.1 ID=mRNA_E-siliculosus-1a_M_contig94.17456.1|Name=mRNA_E-siliculosus-1a_M_contig94.17456.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=334bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:596154..596487+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCAGCTACTCGAACCCTTGCGCTGTCGACGAGAACGTCAACAGCGTATC
GCAACTTCTTCGCGCCATATACTTCGCGGGTCTCCGCGCGTACGGCGTGA
AGATCTCCCGTATCGTCCAGTGCTGCGGGAGCGAGGAGCTGGAGAGAGGG
CCGTTCCACCTGGGACCCTGGTCTGGGCTTCTTCCGGCGGCGGGGCTCCT
GCTCTCGTTGTCCACCACCCAGTTCCTCACCGCCCCCCACCTGACGGCGA
CCAAGTGCAGCCAGAGCTACCACAAGGGACTCGCGGCGAGGGTTGCCGCG
CGGATCGTTCAGGCGCGGTTAGGCGAGAAGGGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:596154..596487+

>mRNA_E-siliculosus-1a_M_contig94.17456.1 ID=mRNA_E-siliculosus-1a_M_contig94.17456.1|Name=mRNA_E-siliculosus-1a_M_contig94.17456.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:596154..596487+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCAGCTACTCGAACCCTTGCGCTGTCGACGAGAACGTCAACAGCGTATC
GCAACTTCTTCGCGCCATATACTTCGCGGGTCTCCGCGCGTACGGCGTGA
AGATCTCCCGTATCGTCCAGTGCTGCGGGAGCGAGGAGCTGGAGAGAGGG
CCGTTCCACCTGGGACCCTGGTCTGGGCTTCTTCCGGCGGCGGGGCTCCT
GCTCTCGTTGTCCACCACCCAGTTCCTCACCGCCCCCCACCTGACGGCGA
CCAAGTGCAGCCAGAGCTACCACAAGGGACTCGCGGCGAGGGTTGCCGCG
CGGATCGTTCAGGCGCGGTTAGGCGAGAAGGGGGGCAGCTACTCGAACCC
TTGCGCTGTCGACGAGAACGTCAACAGCGTATCGCAACTTCTTCGCGCCA
TATACTTCGCGGGTCTCCGCGCGTACGGCGTGAAGATCTCCCGTATCGTC
CAGTGCTGCGGGAGCGAGGAGCTGGAGAGAGGGCCGTTCCACCTGGGACC
CTGGTCTGGGCTTCTTCCGGCGGCGGGGCTCCTGCTCTCGTTGTCCACCA
CCCAGTTCCTCACCGCCCCCCACCTGACGGCGACCAAGTGCAGCCAGAGC
TACCACAAGGGACTCGCGGCGAGGGTTGCCGCGCGGATCGTTCAGGCGCG
GTTAGGCGAGAAGGGG
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