mRNA_E-siliculosus-1a_M_contig933.17390.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig933.17390.1
Unique NamemRNA_E-siliculosus-1a_M_contig933.17390.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig933.17390.1 vs. uniprot
Match: A0A6H5KVT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.320e-26
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = -2 
Query:  246 SKEGNFLYVRTYPSLVRGFSSMILHGGGHFEALYEVRAPTXXXXXXXXXXXXXXXXPSAPTLSEVTTALASSLPRKVPVVPA 491
            +++GNFLYVRTYPSL RGFSSMILHGGGHFEALYEVRAPTXXXXXXXXXXXXXX  PSAPT SEVTTA ASSL RKVPVVPA
Sbjct:  106 ARKGNFLYVRTYPSLARGFSSMILHGGGHFEALYEVRAPTXXXXXXXXXXXXXXSAPSAPTSSEVTTAFASSLSRKVPVVPA 187
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig933.17390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVT6_9PHAE3.320e-2689.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig933contigE-siliculosus-1a_M_contig933:1899..2676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size501
Model size501
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936489.2447355-CDS-E-siliculosus-1a_M_contig933:1898..21591622936489.2447355-CDS-E-siliculosus-1a_M_contig933:1898..2159Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig933 1899..2159 -
1696251101.412707-CDS-E-siliculosus-1a_M_contig933:1898..21591696251101.412707-CDS-E-siliculosus-1a_M_contig933:1898..2159Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig933 1899..2159 -
1622936489.2625642-CDS-E-siliculosus-1a_M_contig933:2436..26761622936489.2625642-CDS-E-siliculosus-1a_M_contig933:2436..2676Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig933 2437..2676 -
1696251101.42436-CDS-E-siliculosus-1a_M_contig933:2436..26761696251101.42436-CDS-E-siliculosus-1a_M_contig933:2436..2676Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig933 2437..2676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig933.17390.1prot_E-siliculosus-1a_M_contig933.17390.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig933 1899..2676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig933.17390.1

>prot_E-siliculosus-1a_M_contig933.17390.1 ID=prot_E-siliculosus-1a_M_contig933.17390.1|Name=mRNA_E-siliculosus-1a_M_contig933.17390.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=167bp
PPLTTCVSSAGQSAAARSDATAATGTRGTGRVTTGTSTVGPGEAATEVVT
TGTGAEEISPGWQSAAVVTIGTGTGTGTVGVGAGTTGTFRGREEARAVVT
SDKVGAEGAEAVAAETGTGNVGVGVGALTSYSASKCPPPCRIMEENPRTR
EGYVRTYRKFPSLLLRV
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mRNA from alignment at E-siliculosus-1a_M_contig933:1899..2676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig933.17390.1 ID=mRNA_E-siliculosus-1a_M_contig933.17390.1|Name=mRNA_E-siliculosus-1a_M_contig933.17390.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=778bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig933:1899..2676- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCACCGCTGACCACATGCGTCTCTTCTGCCGGACAGTCGGCGGCGGCAAG
GTCAGACGCGACGGCCGCCACGGGCACACGAGGCACAGGGAGGGTCACCA
CCGGCACCAGCACCGTAGGCCCAGGCGAAGCCGCGACGGAGGTGGTCACC
ACGGGCACAGGTGCCGAGGAAATATCTCCTGGCTGGCAGTCGGCGGCGGT
GGTCACCATCGGAACGGGCACGGGCACCGGCACCGTAGGCGTGAGTAATG
CATCCTGTTTTTATGGGAGAGGGGTGAACACGTACAAAATGCAGCAAAAC
GGTGCAACATGTGGGCCAAGCAGACGTGTTGGAGGCAGCACGTGAGGAAT
GAATGCAAAATGAAGCTAAATTCAGCGTACACTTAACACAGACTCGTACT
TCTAGAGGTTGGGGGTCACCGGTACATTCAGCGTGTGTCAAGCACAAGGA
GTATAGCAATGTACAAGAAATCACCCCCCCCCCGCTTACCACGTTCATCT
CGTCTTCCACAAGGCAGGTGGGGGCTGGCACCACCGGCACCTTTCGTGGA
AGGGAAGAAGCGAGAGCCGTGGTCACCTCGGACAAAGTAGGCGCAGAAGG
AGCCGAAGCTGTCGCCGCCGAGACTGGAACCGGCAACGTAGGCGTAGGCG
TTGGCGCTCTCACCTCGTACAGCGCTTCGAAGTGCCCACCACCGTGCAGA
ATCATGGAAGAAAATCCCCGCACAAGGGAGGGATATGTCCGAACGTACAG
AAAGTTTCCCTCCTTGCTTCTACGAGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig933:1899..2676-

>mRNA_E-siliculosus-1a_M_contig933.17390.1 ID=mRNA_E-siliculosus-1a_M_contig933.17390.1|Name=mRNA_E-siliculosus-1a_M_contig933.17390.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1002bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig933:1899..2676- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCACCGCTGACCACATGCGTCTCTTCTGCCGGACAGTCGGCGGCGGCAAG
GTCAGACGCGACGGCCGCCACGGGCACACGAGGCACAGGGAGGGTCACCA
CCGGCACCAGCACCGTAGGCCCAGGCGAAGCCGCGACGGAGGTGGTCACC
ACGGGCACAGGTGCCGAGGAAATATCTCCTGGCTGGCAGTCGGCGGCGGT
GGTCACCATCGGAACGGGCACGGGCACCGGCACCGTAGGCCCACCGCTGA
CCACATGCGTCTCTTCTGCCGGACAGTCGGCGGCGGCAAGGTCAGACGCG
ACGGCCGCCACGGGCACACGAGGCACAGGGAGGGTCACCACCGGCACCAG
CACCGTAGGCCCAGGCGAAGCCGCGACGGAGGTGGTCACCACGGGCACAG
GTGCCGAGGAAATATCTCCTGGCTGGCAGTCGGCGGCGGTGGTCACCATC
GGAACGGGCACGGGCACCGGCACCGTAGGCGTGGGGGCTGGCACCACCGG
CACCTTTCGTGGAAGGGAAGAAGCGAGAGCCGTGGTCACCTCGGACAAAG
TAGGCGCAGAAGGAGCCGAAGCTGTCGCCGCCGAGACTGGAACCGGCAAC
GTAGGCGTAGGCGTTGGCGCTCTCACCTCGTACAGCGCTTCGAAGTGCCC
ACCACCGTGCAGAATCATGGAAGAAAATCCCCGCACAAGGGAGGGATATG
TCCGAACGTACAGAAAGTTTCCCTCCTTGCTTCTACGAGTGGTGGGGGCT
GGCACCACCGGCACCTTTCGTGGAAGGGAAGAAGCGAGAGCCGTGGTCAC
CTCGGACAAAGTAGGCGCAGAAGGAGCCGAAGCTGTCGCCGCCGAGACTG
GAACCGGCAACGTAGGCGTAGGCGTTGGCGCTCTCACCTCGTACAGCGCT
TCGAAGTGCCCACCACCGTGCAGAATCATGGAAGAAAATCCCCGCACAAG
GGAGGGATATGTCCGAACGTACAGAAAGTTTCCCTCCTTGCTTCTACGAG
TG
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