mRNA_E-siliculosus-1a_M_contig93.17378.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17378.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17378.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17378.1 vs. uniprot
Match: D8LSS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS0_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 1.410e-129
Identity = 193/204 (94.61%), Postives = 196/204 (96.08%), Query Frame = 1 
Query:  235 MIQAGVGAAALERGEEGSLIAGTEPRRKGWVAPALAAAVGVALLLVCGLSAH-AREDASAAGAA--PMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWTGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSTLAGHPSQACGSTVPFMCLSGAATWGCANNELAWASTPSTTCGECCDVRGC 837
            MIQAG GAAALERGEEGSLIAGTEPRRKGWV PALAAAVGVALLL CGLSAH AREDASAAGAA  PMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTW+GGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCS LAGHPSQACGSTVPF+CLSGAATWGCA+NELAWASTPSTTCGECCDV GC
Sbjct:    1 MIQAGAGAAALERGEEGSLIAGTEPRRKGWVVPALAAAVGVALLLACGLSAHHAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASTPSTTCGECCDVSGC 204
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS0_ECTSI1.410e-12994.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:543951..547158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size681
Model size1674
Exons4
Ec32 orthologEc-15_002830.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorysignal anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2E594@1,2SC37@2759
Seed eggNOG ortholog2880.D8LSS0
Seed ortholog evalue1.9e-105
Seed ortholog score388.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17378.1prot_E-siliculosus-1a_M_contig93.17378.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 544110..546324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936486.0601707-UTR-E-siliculosus-1a_M_contig93:543950..5441091622936486.0601707-UTR-E-siliculosus-1a_M_contig93:543950..544109Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 543951..544109 +
1696251099.9964232-UTR-E-siliculosus-1a_M_contig93:543950..5441091696251099.9964232-UTR-E-siliculosus-1a_M_contig93:543950..544109Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 543951..544109 +
1622936486.139516-UTR-E-siliculosus-1a_M_contig93:546324..5471581622936486.139516-UTR-E-siliculosus-1a_M_contig93:546324..547158Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 546325..547158 +
1696251100.0603056-UTR-E-siliculosus-1a_M_contig93:546324..5471581696251100.0603056-UTR-E-siliculosus-1a_M_contig93:546324..547158Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 546325..547158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936486.0801091-CDS-E-siliculosus-1a_M_contig93:544109..5443591622936486.0801091-CDS-E-siliculosus-1a_M_contig93:544109..544359Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 544110..544359 +
1696251100.0092456-CDS-E-siliculosus-1a_M_contig93:544109..5443591696251100.0092456-CDS-E-siliculosus-1a_M_contig93:544109..544359Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 544110..544359 +
1622936486.0951037-CDS-E-siliculosus-1a_M_contig93:545030..5451601622936486.0951037-CDS-E-siliculosus-1a_M_contig93:545030..545160Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 545031..545160 +
1696251100.020279-CDS-E-siliculosus-1a_M_contig93:545030..5451601696251100.020279-CDS-E-siliculosus-1a_M_contig93:545030..545160Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 545031..545160 +
1622936486.10959-CDS-E-siliculosus-1a_M_contig93:545618..5458301622936486.10959-CDS-E-siliculosus-1a_M_contig93:545618..545830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 545619..545830 +
1696251100.030491-CDS-E-siliculosus-1a_M_contig93:545618..5458301696251100.030491-CDS-E-siliculosus-1a_M_contig93:545618..545830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 545619..545830 +
1622936486.1253273-CDS-E-siliculosus-1a_M_contig93:546235..5463241622936486.1253273-CDS-E-siliculosus-1a_M_contig93:546235..546324Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 546236..546324 +
1696251100.0479167-CDS-E-siliculosus-1a_M_contig93:546235..5463241696251100.0479167-CDS-E-siliculosus-1a_M_contig93:546235..546324Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 546236..546324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17378.1

>prot_E-siliculosus-1a_M_contig93.17378.1 ID=prot_E-siliculosus-1a_M_contig93.17378.1|Name=mRNA_E-siliculosus-1a_M_contig93.17378.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=227bp
MCADRCVSPCSRSNSLRMTNKQSYEMIQAGVGAAALERGEEGSLIAGTEP
RRKGWVAPALAAAVGVALLLVCGLSAHAREDASAAGAAPMQASTDSVPSC
SLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWTGGDGCTSFCDLSGC
ADTLENTGVDDLPRRCLECDETQCSTLAGHPSQACGSTVPFMCLSGAATW
GCANNELAWASTPSTTCGECCDVRGC*
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mRNA from alignment at E-siliculosus-1a_M_contig93:543951..547158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17378.1 ID=mRNA_E-siliculosus-1a_M_contig93.17378.1|Name=mRNA_E-siliculosus-1a_M_contig93.17378.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3208bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:543951..547158+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCACGCCTGTCGCGATCTTTACTACTTCTCGTATACGACACACCGGCGGC
AGGTGAGACACGGCAGCAGGCACGGGCAAATGGTCTAGCAGCCCTTGCCG
TTGACATGCTGTACTTTGCAGCGAGATCTCCATCGCTGCCCCTCTCGATC
GGTTGTTGAATGTGCGCCGATCGCTGTGTGTCTCCTTGCAGCAGGTCAAA
CTCGCTCAGAATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGTG
TCGGGGCAGCAGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGGC
ACTGAGCCGCGGCGCAAAGGATGGGTGGCACCGGCGTTGGCGGCGGCGGT
TGGTGTCGCTCTGCTGCTGGTCTGTGGATTGTCTGCTCATGCTCGGGAGG
ACGCTTCCGGTGTGTGTCTGTTGGGAAACAACATGTGCTGATATGCATAC
AGCCGTAGATTTACCACTTCCCGAGCACAATGCACAACAAAACAATGCAA
CACAGCAGCAATACGTAGCTAGTTATTGCCGGGTAAACGTGCTAAACACA
CATGTGAGCCCGATGTAACTGCTAGCTGCACTTGTAGTGGGTTCGGAGAT
GGGAACTTCAACACGAGGTTGGCGGAATCAAACGGCAGCCAGCGCGTGAT
ATACCGCACAATACAAGCAGCGTGCTTGCGGACCCGCCAAGCTGCGATTT
CTAGGGTCGTAGATACCGACCGACGTGAAAGTTTTGGAGTGATAATGAAT
CACAACGCGGAATCCACGTCTGCCATGAGCTATGATTGCAGAAAAACCAT
TCGCTAATCCTGAGGTTTGCACATCCCGGACCAACTTTGTTCTCGTCAAG
CGACCCAGCCAAAACCGTCGCTCACAGGCGTGCGAGCGGCGGTCGAACAA
CTTGATTGTGTTTCTGTTGCTTGCCTGCCCCCCAACAGGTTTGTTCTCAT
CCCATATGTCCAGTCTGTTTCGTTCCCACACACGCGGAGGGTTTGCCATG
ACAGAGGCGTTTGCACCTTTGAAAAAAATACTCTTCCAACCGCACCGCCT
CCTCTGTCCGGCAACGACCCCTTCCCGCAGCTGCCGGCGCTGCCCCCATG
CAGGCCTCCACGGACAGCGTCCCTTCCTGCAGCCTCCTGTCCTGCACGAG
CTCGGGCTGCGACTGGGACGGGGCCCCTTTCCTCTGCCTGGACGGGGGCT
CCGCTGGAGGGTGGGCGCCTTGTACAGTTGTTGCTAAATTCGTCGACGTC
GTTGTTGACGCTCTGTTATTGTGGCGACTCTTAAGGTCTGACCGAATGTT
GAACCGTAGCTCAACTCTATCAGACCGTAAAACCTACTGTCGGTGTTTTA
GATCTGTGTCAAGGTGATGAGTGTACGCTCCCGCCCCGTCCGCCGGAATT
CGGTACATAAGTCGTCGGTATTGGCGTGCGCGCGTGCCTCACGCGTTTGA
GTCTTCTCGGCGCATTAATCCTACTGCAGGGTGTACGTGTACAGCAACAA
GATTGAATGACTGTGAAACAACTAGAAACAACCACACATACCGACCTCAC
ATCGCGTAAGAGACATCGTTAAAAACTCAAGACGAGATTCCTCTTTCGTT
TCCCGGCGAGCGCTACACCACCACCATATCTCATGCTACCTCTCTTCCGC
GCGCCCCCTCCTCAACAGGTGTGCAGACAGCGCCTCTACGTGGACCGGAG
GCGACGGCTGCACGTCCTTCTGCGACCTCTCCGGCTGCGCCGATACCCTT
GAGAACACCGGCGTGGACGACCTGCCGCGGCGCTGCCTGGAGTGCGACGA
AACACAGTGCTCCACCCTGGCCGGGCACCCGTCGCAGGCGTGCGGCAGCA
CGGTGCCGTTCATGTGTCTCTCCGGCGCAGGTATGTCTCGTGTGTCGTGT
CGATGGCACGATGGCTGGTATTTCTTTGCTACGAGCGTGGATGCAGTACA
TGGGGGGGGGGGTGCTCAACAAGGCCGGTGTGTGCCCGGCGAATCGCCGG
CGCTACAATATCAGATCAGAGGCGCTTTTTCAAACTACAGGATGACTTGA
TGATTCAGCCTGTATCGAGCGAATTATCCGGCGCTGTTCAGGGCCACCGG
CGCTATACCACGGACGCTGTTGAGGCCCGTCCACTGCAGTCGTGGGTGGT
GCTTGGATTCTTGTCGAACACTGCCTGTGTCCGCCGCTCTTCTTTCACGA
TGGTGAAACTTAAGCTTTGGTGTTTCCTTCGCGTCGTCGCTTATGCCTTT
TGTTGGTCCTCGGTTTTGCCTACGTGCTTGTGCAGCCACCTGGGGCTGCG
CGAACAACGAGCTGGCGTGGGCAAGCACACCTTCGACAACGTGTGGCGAG
TGCTGCGATGTCAGGGGCTGCTAAATTACTTGCAAGGGGCGCATGGTGGA
AGGGGTCGCGGATTGGCTTCGCTTGAAACGGAGGGCGCCCCATTCGCCCG
TGGCTACTGTAGGTTTAGAGATACAGTAGTTTGTTTGGTAAGTACGGGGG
GCTCATAGGTGCTGGCAGAGATGGCTATCCGTAAGGGTTTTATCGTTTCT
TGTCGGCGGTCAATTTTGTCTTGACGCTCCAGCATTTCTATTATCATGGT
GGGCAGAAGTCAGAAGTAGTGGGTAGGTTGGGCACCGATTACACCCTGGG
GGGGGGAGGAGGTTGCACCCCGAAGTGGGCAAGTAGTCCCGCATCTCGGT
GAGTGGCGTTATTCCAATCGACACGGTGGGCGAGCAGCATAGACAAAAAA
ATGGCTCAAAGTCGATCCCGGCTTCCCATCCTCCTCACCCAACCCTTGGG
AGGTCGTGATCGGTGCACAACCTACACCTCTGATCACCAGCGTAGAGGTG
GATTTTGGTCGCAGAGTGGTCGGGACGTGGGAAAGTAGGCGAGATACTCA
AAGGAATCTTGTACTCGTAGCGACGTGTCCTGGCCGCAATCCGTCGGCAA
CTGCAACCTTGAGCACGGTAGGGCAAGGAGTAAATGGTCTACGACACTCA
TTCTCGAGGTGGGGAAATTTCAGCGTGCGACGCAGGCGCAAGCTCGGACT
TCACCCCGGTACACCAACACGAATGAGCCGTTCAAGTCATCATGCTACAA
ATTCGTGTACATAGACGGGCGATGTTTCCGCGGACCTCTTATCCGGTGAA
ATGTTGCTAGGCCATGCATGAATCTCATTCAAGCATGCCACGGGTCGCGC
CTTATCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:543951..547158+

>mRNA_E-siliculosus-1a_M_contig93.17378.1 ID=mRNA_E-siliculosus-1a_M_contig93.17378.1|Name=mRNA_E-siliculosus-1a_M_contig93.17378.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1362bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:543951..547158+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGCGCCGATCGCTGTGTGTCTCCTTGCAGCAGGTCAAACTCGCTCAG
AATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGTGTCGGGGCAG
CAGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGGCACTGAGCCG
CGGCGCAAAGGATGGGTGGCACCGGCGTTGGCGGCGGCGGTTGGTGTCGC
TCTGCTGCTGGTCTGTGGATTGTCTGCTCATGCTCGGGAGGACGCTTCCG
ATGTGCGCCGATCGCTGTGTGTCTCCTTGCAGCAGGTCAAACTCGCTCAG
AATGACCAACAAGCAATCGTATGAGATGATCCAGGCGGGTGTCGGGGCAG
CAGCCCTTGAACGGGGGGAGGAAGGGTCGCTGATAGCTGGCACTGAGCCG
CGGCGCAAAGGATGGGTGGCACCGGCGTTGGCGGCGGCGGTTGGTGTCGC
TCTGCTGCTGGTCTGTGGATTGTCTGCTCATGCTCGGGAGGACGCTTCCG
CTGCCGGCGCTGCCCCCATGCAGGCCTCCACGGACAGCGTCCCTTCCTGC
AGCCTCCTGTCCTGCACGAGCTCGGGCTGCGACTGGGACGGGGCCCCTTT
CCTCTGCCTGGACGGGGGCTCCGCTGGAGGCTGCCGGCGCTGCCCCCATG
CAGGCCTCCACGGACAGCGTCCCTTCCTGCAGCCTCCTGTCCTGCACGAG
CTCGGGCTGCGACTGGGACGGGGCCCCTTTCCTCTGCCTGGACGGGGGCT
CCGCTGGAGGGTGTGCAGACAGCGCCTCTACGTGGACCGGAGGCGACGGC
TGCACGTCCTTCTGCGACCTCTCCGGCTGCGCCGATACCCTTGAGAACAC
CGGCGTGGACGACCTGCCGCGGCGCTGCCTGGAGTGCGACGAAACACAGT
GCTCCACCCTGGCCGGGCACCCGTCGCAGGCGTGCGGCAGCACGGTGCCG
TTCATGTGTCTCTCCGGCGCAGGTGTGCAGACAGCGCCTCTACGTGGACC
GGAGGCGACGGCTGCACGTCCTTCTGCGACCTCTCCGGCTGCGCCGATAC
CCTTGAGAACACCGGCGTGGACGACCTGCCGCGGCGCTGCCTGGAGTGCG
ACGAAACACAGTGCTCCACCCTGGCCGGGCACCCGTCGCAGGCGTGCGGC
AGCACGGTGCCGTTCATGTGTCTCTCCGGCGCAGCCACCTGGGGCTGCGC
GAACAACGAGCTGGCGTGGGCAAGCACACCTTCGACAACGTGTGGCGAGT
GCTGCGATGTCAGGGGCTGCTAACCACCTGGGGCTGCGCGAACAACGAGC
TGGCGTGGGCAAGCACACCTTCGACAACGTGTGGCGAGTGCTGCGATGTC
AGGGGCTGCTAA
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