mRNA_E-siliculosus-1a_M_contig93.17354.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17354.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17354.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17354.1 vs. uniprot
Match: Q8QN79_ESV1K (EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K)

HSP 1 Score: 106 bits (264), Expect = 6.360e-24
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 2 
Query:    2 KMGIKVGEKAGQVGKVAKRLYSERYGAEAGANIPKRETTFRSKPFSENCFWGRDADLIHEAIRMVCV 202
            KMGI VGEKAGQVGKV KRLYSERYG EAG NIPKR TTFR KPFSEN ++ RD+DLI   IR+VC 
Sbjct:  427 KMGISVGEKAGQVGKVVKRLYSERYGQEAGRNIPKRSTTFRGKPFSENTYYARDSDLIQRGIRIVCA 493
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17354.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 101 bits (251), Expect = 1.630e-22
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:    2 KMGIKVGEKAGQVGKVAKRLYSERYGAEAGANIPKRETTFRSKPFSENCFWGRDADLIHEAIRMVCVAPPKRS 220
            K+GI VGEK G++GK   R Y++RYG EAG NIPKR TT+R KPF+ENC+W RDADL+ EAIR+VC +P K+S
Sbjct:  296 KLGICVGEKGGEIGKELIRRYTKRYGVEAGLNIPKRPTTYRGKPFNENCYWSRDADLVQEAIRIVC-SPEKKS 367
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17354.1 vs. uniprot
Match: A0A6H5JC19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC19_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.650e-21
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 2 
Query:    2 KMGIKVGEKAGQVGKVAKRLYSERYGAEAGANIPKRETTFRSKPFSENCFWGRDADLIHEAIRMVC 199
            KMG K+GEKAGQVGK+AK LY +R+G  A ANIPKR T FR KPFSEN  W RDAD+I EAIR+VC
Sbjct:  297 KMGFKLGEKAGQVGKMAKSLYRKRHGVAAAANIPKRHTIFRGKPFSENTHWQRDADIIQEAIRIVC 362
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17354.1 vs. uniprot
Match: Q8QN80_ESV1K (EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN80_ESV1K)

HSP 1 Score: 92.0 bits (227), Expect = 8.010e-19
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 2 
Query:    2 KMGIKVGEKAGQVGKVAKRLYSERYGAEAGANIPKRETTFRSKPFSENCFWGRDADLIHEAIRMVC 199
            ++GI  GE+AGQVGKVAKRLY ERYG EA  +IP R TTFR KPF E  ++ RDADLI  AIR+VC
Sbjct:  436 RLGISTGERAGQVGKVAKRLYGERYGEEANRDIPTRHTTFRGKPFVERTYFSRDADLIQRAIRIVC 501
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17354.1 vs. uniprot
Match: D8LPL9_ECTSI (EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.100e-18
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 2 
Query:    2 KMGIKVGEKAGQVGKVAKRLYSERYGAEAGANIPKRETTFRSKPFSENCFWGRDADLIHEAIRMVC 199
            K+GI  GE+AGQVGKVAKRLY ++YG EA  +IP R TTFR KPF E  ++ RDADLI +AIR+VC
Sbjct:  436 KLGISTGERAGQVGKVAKRLYGQKYGEEANRDIPTRHTTFRGKPFVERTYFSRDADLIQQAIRIVC 501
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17354.1 vs. uniprot
Match: A0A836CFR2_9STRA (KilA-N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.330e-13
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:    8 GIKVGEKAGQVGKVAKRLYSERYGAEAGANIPKRETTFRSKPFSENCFWGRDADLIHEAIRMVCVA 205
            G+++GE+AG VGK  + LY  +YG +A   IPKR T FR KPFSEN ++ RD DLI  AIR VC A
Sbjct:  351 GVRIGERAGAVGKRIRALYRAKYGDDAAQGIPKRSTFFRGKPFSENTYFMRDKDLITTAIREVCGA 416
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Q8QN79_ESV1K6.360e-2476.12EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K[more]
B5LWM4_9PHYC1.630e-2264.38Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JC19_9PHAE2.650e-2171.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QN80_ESV1K8.010e-1966.67EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL9_ECTSI1.100e-1865.15EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A836CFR2_9STRA3.330e-1356.06KilA-N domain-containing protein n=1 Tax=Tribonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:348155..348618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size219
Model size464
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2EUDG@1,2SWJG@2759
Seed eggNOG ortholog2880.D8LPL9
Seed ortholog evalue1.2e-16
Seed ortholog score92.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17354.1prot_E-siliculosus-1a_M_contig93.17354.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 348159..348377 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936481.9663444-UTR-E-siliculosus-1a_M_contig93:348154..3481581622936481.9663444-UTR-E-siliculosus-1a_M_contig93:348154..348158Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 348155..348158 +
1696251097.8814263-UTR-E-siliculosus-1a_M_contig93:348154..3481581696251097.8814263-UTR-E-siliculosus-1a_M_contig93:348154..348158Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 348155..348158 +
1622936482.0024004-UTR-E-siliculosus-1a_M_contig93:348377..3486181622936482.0024004-UTR-E-siliculosus-1a_M_contig93:348377..348618Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 348378..348618 +
1696251097.906489-UTR-E-siliculosus-1a_M_contig93:348377..3486181696251097.906489-UTR-E-siliculosus-1a_M_contig93:348377..348618Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 348378..348618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936481.987547-CDS-E-siliculosus-1a_M_contig93:348158..3483771622936481.987547-CDS-E-siliculosus-1a_M_contig93:348158..348377Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 348159..348377 +
1696251097.8952432-CDS-E-siliculosus-1a_M_contig93:348158..3483771696251097.8952432-CDS-E-siliculosus-1a_M_contig93:348158..348377Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 348159..348377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17354.1

>prot_E-siliculosus-1a_M_contig93.17354.1 ID=prot_E-siliculosus-1a_M_contig93.17354.1|Name=mRNA_E-siliculosus-1a_M_contig93.17354.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=73bp
MGIKVGEKAGQVGKVAKRLYSERYGAEAGANIPKRETTFRSKPFSENCFW
GRDADLIHEAIRMVCVAPPKRS*
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mRNA from alignment at E-siliculosus-1a_M_contig93:348155..348618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17354.1 ID=mRNA_E-siliculosus-1a_M_contig93.17354.1|Name=mRNA_E-siliculosus-1a_M_contig93.17354.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=464bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:348155..348618+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAAAATGGGCATCAAGGTCGGCGAAAAGGCCGGGCAGGTCGGGAAGGTCG
CCAAACGCCTCTACTCGGAGCGGTACGGTGCCGAAGCTGGTGCCAACATC
CCTAAACGCGAAACTACCTTCCGCTCGAAGCCATTCAGCGAGAACTGCTT
TTGGGGACGCGACGCGGATCTGATTCATGAAGCCATTCGCATGGTGTGTG
TCGCACCACCCAAACGCTCCTGAAATCTAGCACACATCGCTTAAACCAAA
AATGGATTCTCTGCAGGCACTGGCCTGCCATTCCTGGCAAACTCGGTTGT
TGGTACCAACATACCTCACGACATCCCGGGCACTTTACGCCCGTGGGTGA
CTGCGTGGGCCAAATGCGTGGGGTTGGACAAGAACGCAGACGTGTTGCAA
ATGGTACACGAATGCGTCGAACGCGGTCATCGACAAGACTTTGCGCAAGC
CGCGCTTTCACGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:348155..348618+

>mRNA_E-siliculosus-1a_M_contig93.17354.1 ID=mRNA_E-siliculosus-1a_M_contig93.17354.1|Name=mRNA_E-siliculosus-1a_M_contig93.17354.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:348155..348618+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGCATCAAGGTCGGCGAAAAGGCCGGGCAGGTCGGGAAGGTCGCCAA
ACGCCTCTACTCGGAGCGGTACGGTGCCGAAGCTGGTGCCAACATCCCTA
AACGCGAAACTACCTTCCGCTCGAAGCCATTCAGCGAGAACTGCTTTTGG
GGACGCGACGCGGATCTGATTCATGAAGCCATTCGCATGGTGTGTGTCGC
ACCACCCAAACGCTCCTGAATGGGCATCAAGGTCGGCGAAAAGGCCGGGC
AGGTCGGGAAGGTCGCCAAACGCCTCTACTCGGAGCGGTACGGTGCCGAA
GCTGGTGCCAACATCCCTAAACGCGAAACTACCTTCCGCTCGAAGCCATT
CAGCGAGAACTGCTTTTGGGGACGCGACGCGGATCTGATTCATGAAGCCA
TTCGCATGGTGTGTGTCGCACCACCCAAACGCTCCTGA
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