mRNA_E-siliculosus-1a_M_contig93.17347.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17347.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17347.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.210e-29
Identity = 86/211 (40.76%), Postives = 114/211 (54.03%), Query Frame = 1 
Query:   64 QKAYVTAVRSGLNKAYYAASVVDSGLVSTSKTGRMXXXXXVFKFLSR-VPFAGWLAGLAGALFTVGDHYVQTLQLAKIANLASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQGLDTFAVDTDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCKELLKGVKRDRLQGAGSLDEKVERLIRIIFPE 693
            +KAY  AVR G+  A+ A+SVV S LV+TSKTG +       K LS  VP  G L G+A A    GD Y+QT ++ KIA++A D+ E   LA+R+A                        G  G S+    L   A D D  +ME+F +  AN+E     A   T +EQAGRRLGK+H + LL  V   RL+GA S++EKVE L+R + PE
Sbjct:  808 RKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXGGGGWSQGEYALPDGARDRD--VMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPE 1016
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.110e-27
Identity = 88/238 (36.97%), Postives = 128/238 (53.78%), Query Frame = 1 
Query:   10 KYTEEEDALGKKLARTPFQKAYVTAVRSGLNKAYYAASVVDSGLVSTSKTGRMXXXXXVFKFLSR-VPFAGWLAGLAGALFTVGDHYVQTLQLAKIANLASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQGLDTFAVD-TDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCKELLKGVKRDRLQGAGSLDEKVERLIRIIFPEYVQSPAWT 717
            ++TE+ +   K+LA  PF KAY TA+R+GL KAY AAS +DS  V TSKTG M       K +S  VP  G L  LAG     GD Y+QT +L KI  +A D+ E   LA+R+A  L   L +  +     ++   +    GGS   +G D    D ++E++ +Y +E     E TAD       ++  G+RLGK+H ++LLK ++   L G+    +K++ L+  I PE    PA T
Sbjct:  427 RHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAGGSGCGRGADMMPGDMSEEDVFKYLLE-----EVTAD-----ERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAAT 654
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.040e-24
Identity = 82/230 (35.65%), Postives = 118/230 (51.30%), Query Frame = 1 
Query:    7 SKYTEEEDALGKKLARTPFQKAYVTAVRSGLNKAYYAASVVDSGLVSTSKTGRMXXXXXVFKFLSR-VPFAGWLAGLAGALFTVGDHYVQTLQLAKIANLASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQGLDTFAVDTDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCKELLKGVKRDRLQGAGSLDEKVERLIRIIFPE 693
            S + E++   G++   +  +KAY  AVR G+  A+ A+SVV S LV+TSKTG +         LS  VP  G L G+A      GD Y+QT ++AKIA++A D+ E   LA+R+A                           G  +    L   A + D  +ME+F +  +N E     A   T +EQAG RLGK+H + LL  V    L+GA +++EKVE L+R +FPE
Sbjct:  816 SSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXGWRQGEYALPDGAGEKD--VMEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVGTGCLEGANNIEEKVELLVRTVFPE 1043
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPS8_ECTSI4.210e-2940.76Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA3_ECTSI2.110e-2736.97Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBQ0_9PHAE1.040e-2435.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:317317..319990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size738
Model size738
Exons6
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.1
EggNOG OGs2QQYD@2759,COG4886@1
EggNOG free text desc.protein serine/threonine kinase activity
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
KEGG ModuleM00686
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG koko:K04730,ko:K04733
Seed eggNOG ortholog2880.D7FUA2
Seed ortholog evalue3.6e-33
Seed ortholog score148.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17347.1prot_E-siliculosus-1a_M_contig93.17347.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 317317..319990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936481.5215783-CDS-E-siliculosus-1a_M_contig93:317316..3173941622936481.5215783-CDS-E-siliculosus-1a_M_contig93:317316..317394Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 317317..317394 -
1696251097.706993-CDS-E-siliculosus-1a_M_contig93:317316..3173941696251097.706993-CDS-E-siliculosus-1a_M_contig93:317316..317394Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 317317..317394 -
1622936481.547183-CDS-E-siliculosus-1a_M_contig93:317660..3177531622936481.547183-CDS-E-siliculosus-1a_M_contig93:317660..317753Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 317661..317753 -
1696251097.7173636-CDS-E-siliculosus-1a_M_contig93:317660..3177531696251097.7173636-CDS-E-siliculosus-1a_M_contig93:317660..317753Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 317661..317753 -
1622936481.5699255-CDS-E-siliculosus-1a_M_contig93:317882..3180191622936481.5699255-CDS-E-siliculosus-1a_M_contig93:317882..318019Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 317883..318019 -
1696251097.7271664-CDS-E-siliculosus-1a_M_contig93:317882..3180191696251097.7271664-CDS-E-siliculosus-1a_M_contig93:317882..318019Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 317883..318019 -
1622936481.5906553-CDS-E-siliculosus-1a_M_contig93:319150..3192891622936481.5906553-CDS-E-siliculosus-1a_M_contig93:319150..319289Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 319151..319289 -
1696251097.7382812-CDS-E-siliculosus-1a_M_contig93:319150..3192891696251097.7382812-CDS-E-siliculosus-1a_M_contig93:319150..319289Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 319151..319289 -
1622936481.6133497-CDS-E-siliculosus-1a_M_contig93:319420..3195371622936481.6133497-CDS-E-siliculosus-1a_M_contig93:319420..319537Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 319421..319537 -
1696251097.7536654-CDS-E-siliculosus-1a_M_contig93:319420..3195371696251097.7536654-CDS-E-siliculosus-1a_M_contig93:319420..319537Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 319421..319537 -
1622936481.6296139-CDS-E-siliculosus-1a_M_contig93:319816..3199901622936481.6296139-CDS-E-siliculosus-1a_M_contig93:319816..319990Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 319817..319990 -
1696251097.7685575-CDS-E-siliculosus-1a_M_contig93:319816..3199901696251097.7685575-CDS-E-siliculosus-1a_M_contig93:319816..319990Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 319817..319990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17347.1

>prot_E-siliculosus-1a_M_contig93.17347.1 ID=prot_E-siliculosus-1a_M_contig93.17347.1|Name=mRNA_E-siliculosus-1a_M_contig93.17347.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=246bp
MQSKYTEEEDALGKKLARTPFQKAYVTAVRSGLNKAYYAASVVDSGLVST
SKTGRMGKIGKVFKFLSRVPFAGWLAGLAGALFTVGDHYVQTLQLAKIAN
LASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQ
GLDTFAVDTDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCK
ELLKGVKRDRLQGAGSLDEKVERLIRIIFPEYVQSPAWTSAPAGSF
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mRNA from alignment at E-siliculosus-1a_M_contig93:317317..319990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17347.1 ID=mRNA_E-siliculosus-1a_M_contig93.17347.1|Name=mRNA_E-siliculosus-1a_M_contig93.17347.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2674bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:317317..319990- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAGTCAAAATACACAGAGGAAGAAGACGCACTCGGAAAGAAACTGGC
TCGCACCCCATTTCAGAAGGCATACGTCACCGCCGTCAGAAGTGGCCTAA
ACAAAGCTTACTACGCCGCGAGCGTCGTCGACAGTGGGCTAGTGTCCACG
AGCAAGACCGGCCGTATGGGCAAGGTGGGTGCCTTTGGGAGATAGATATG
TGGTCGCAAGACGAGAGATCGAATATGTGACATATTTCGCGGTGCTGCTG
GAGCACATGGATGGCAGAGAATCACTTCGTGGTGACCGTGGGTGGCAGAC
CCAAAGATTACCGACAAACTGTGTGAACTGAAGTCGCAGGCACTTAGAAC
AGGCCGGATGGAAGAGACGAGCTCCTTGATGTCTCGATATTGTGCAGTGC
TTCCGTCGCCTCTATACCAACCGAAGAGCGACCCGTTCGTTGCTCCTGTG
CAGATAGGGAAGGTCTTCAAATTTCTGTCTCGTGTCCCGTTCGCCGGCTG
GCTGGCGGGCCTAGCAGGAGCGCTTTTCACGGTCGGCGACCACTACGTCC
AGACTCTGCAGCTGGCGAAGGTTAGTTATCCTGCTCTCCTGCGGCGGCCG
TGGATTCCAGCGTCTGCTAGCCGCCTATGAGCGTAGCCTGTCTCCACTAT
TGATGAGCGGTATACAAGGCCCCACTCCTCTCTATTGCTGTGCTTCGTCA
GATCGCCAACTTGGCATCAGATTCGGAGGAGTTTGGCCAGCTGGCGAAAA
GAGTGGCCGAGGGACTCGCCGGCTGCCTTTCACACGGAACAACGACAGGA
GGCCCCGCGCACAGCGCAGCGGGCATGGGCGGGGAGAGAGGTGAGGGGGG
GTGTTTAGCAAAAGCTTCACGATCGCAGCTTGTTTGCCCCTTGCACGAGA
GCGCCCTCGATCACGTGGTATTTCATAGCGATCGGAATCTTTGGCTTGTG
CACACGGAATCCATCGTTGTTCGTTTTGCTTTGCACCATGTCTTCCTCCC
GAACACCATGGGCAAGTGATTACGTTTCGTAGAAGACTCGGCTGCGTGGG
GCGATCGGTCGCTCAGTCTTGCGCGCTTGTCTGCACACAACAAGACAACC
CCCTACTCTGGAACCCGTCAACGAACACAGACGAGTTTTTTTTCTAAGCC
ACGATAGATGACTTGAACCCGCGGCCACCTTGTGCCAGCGTCGGGCATCG
ACTCCATCGGTTCTTGTGGAAAGCCAATCTCGCCGGTCTGAGCCTGCATA
TTGAGAAGATTTGACCGAACAACCTCACCCTCAGATCCTTTGGGACCCAT
TTCTTCTTCAGGTTCTTGCCAAAATCAGATTTTGGCCAAAAAACGCTCCC
TCTTGATCCGATCTTTTTTATGCTGCGATCGGACTGGAGGCAAAACTTGT
CCAGTTCTGATGCGACGATACTATTGTTGTCGGGCCAGATTTTGTTTGTA
CGAGATACCGGTGAAACTGTTGTCAGGGTGTGGGTGTCTGTCCTTCCGTT
TGTCTCGCCTTCGACCCTTCACGTCTGCGTACGACGCACTCTCGCATATG
CGCAAAAACCGCACACGCCACACATGGCCGAAAGGCGGCATATAAATGTC
TTGTTGAGTACCTACCGCCGCTGCCGCCCCGGCGAGCGTGCGTGCAGATT
ATGATGAGCACGATTTCCTCGCCAACGATACGGAAGAGGGATGGGATAGC
TACAAGCAGATACCCAAGGTTACGTGCCACGCTCGTCGGTCGCGGTTGTG
CGGTGATGCGCGAGGGGGACTCTCAACACGGAGGCATGTTCCGCGAAGAC
CAGATCGGTTCCCCATAAGATGCGCGACCCAAACGTTTCGCTTGATGTTT
TCGTTACAGTAGGCCGTCCGATGTTGTTATCACGTCATAACAAAAGGTTC
GAGGAGCCCGAGATCGGATTGCTGTACGAATGGGTGTGACGACGGACCAC
TGCGTGCTCTGTGTCTCGCAGGCGGTTCCGAATCAAGTCAGGGCTTGGAT
ACCTTCGCAGTCGACACGGACGAGAACATCATGGAGTATTTTGTCGAATG
TGCGGCGAACGTCGAGTCTACCGCCGACGGAGCTGGGGCAGGGACACTTG
ACGAGCAGGTAAGTCGTTGGCTGGTGAGATCTCACGCCGCGGCCTATTTT
GGTGGGACGAAGCCGTTGTTTTCAGTAGCGATATCTCCCTCGTCGGGCAT
CTTTCATGTGCACACACACCTTTTTATTTGTCTTCAGGCGGGAAGACGGC
TTGGGAAGCAGCACTGCAAGGAACTACTGAAGGGTGTGAAGCGAGATCGC
CTTCAGGGCGCGGGTTCCCTTGATGAAAAGGTATTTTTAGAGTTTTCGTC
TTTGGAAGAATCGCGGCCATGTTCTCGTGTGCGTATCGCTCGACATTCGG
GCTCTTGGTTGCCGATGTATTTGTTCTGTTTTGTCTGGTTCGAGACGTTA
GGCTCGACGAAATCAACGTTGGAGTGGCTTTGGCGACGCGCTCCTGAACT
TTAACATAGGGAAGGCAGGGTGCGCACAGCCGGGGCGCTAAGGCAACAAC
GCATTGGTTCTGTCAGTCATTCACTTGGGTATTTGCGGCGATCCAGGTCG
AACGGCTAATCCGGATAATTTTCCCCGAGTACGTCCAATCTCCGGCCTGG
ACGTCAGCACCCGCCGGAAGCTTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:317317..319990-

>mRNA_E-siliculosus-1a_M_contig93.17347.1 ID=mRNA_E-siliculosus-1a_M_contig93.17347.1|Name=mRNA_E-siliculosus-1a_M_contig93.17347.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1476bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:317317..319990- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAGTCAAAATACACAGAGGAAGAAGACGCACTCGGAAAGAAACTGGC
TCGCACCCCATTTCAGAAGGCATACGTCACCGCCGTCAGAAGTGGCCTAA
ACAAAGCTTACTACGCCGCGAGCGTCGTCGACAGTGGGCTAGTGTCCACG
AGCAAGACCGGCCGTATGGGCAAGATGCAGTCAAAATACACAGAGGAAGA
AGACGCACTCGGAAAGAAACTGGCTCGCACCCCATTTCAGAAGGCATACG
TCACCGCCGTCAGAAGTGGCCTAAACAAAGCTTACTACGCCGCGAGCGTC
GTCGACAGTGGGCTAGTGTCCACGAGCAAGACCGGCCGTATGGGCAAGAT
AGGGAAGGTCTTCAAATTTCTGTCTCGTGTCCCGTTCGCCGGCTGGCTGG
CGGGCCTAGCAGGAGCGCTTTTCACGGTCGGCGACCACTACGTCCAGACT
CTGCAGCTGGCGAAGATAGGGAAGGTCTTCAAATTTCTGTCTCGTGTCCC
GTTCGCCGGCTGGCTGGCGGGCCTAGCAGGAGCGCTTTTCACGGTCGGCG
ACCACTACGTCCAGACTCTGCAGCTGGCGAAGATCGCCAACTTGGCATCA
GATTCGGAGGAGTTTGGCCAGCTGGCGAAAAGAGTGGCCGAGGGACTCGC
CGGCTGCCTTTCACACGGAACAACGACAGGAGGCCCCGCGCACAGCGCAG
CGGGCATGGGCGGGGAGAGAGATCGCCAACTTGGCATCAGATTCGGAGGA
GTTTGGCCAGCTGGCGAAAAGAGTGGCCGAGGGACTCGCCGGCTGCCTTT
CACACGGAACAACGACAGGAGGCCCCGCGCACAGCGCAGCGGGCATGGGC
GGGGAGAGAGGCGGTTCCGAATCAAGTCAGGGCTTGGATACCTTCGCAGT
CGACACGGACGAGAACATCATGGAGTATTTTGTCGAATGTGCGGCGAACG
TCGAGTCTACCGCCGACGGAGCTGGGGCAGGGACACTTGACGAGCAGGCG
GTTCCGAATCAAGTCAGGGCTTGGATACCTTCGCAGTCGACACGGACGAG
AACATCATGGAGTATTTTGTCGAATGTGCGGCGAACGTCGAGTCTACCGC
CGACGGAGCTGGGGCAGGGACACTTGACGAGCAGGCGGGAAGACGGCTTG
GGAAGCAGCACTGCAAGGAACTACTGAAGGGTGTGAAGCGAGATCGCCTT
CAGGGCGCGGGTTCCCTTGATGAAAAGGCGGGAAGACGGCTTGGGAAGCA
GCACTGCAAGGAACTACTGAAGGGTGTGAAGCGAGATCGCCTTCAGGGCG
CGGGTTCCCTTGATGAAAAGGTCGAACGGCTAATCCGGATAATTTTCCCC
GAGTACGTCCAATCTCCGGCCTGGACGTCAGCACCCGCCGGAAGCTTTGT
CGAACGGCTAATCCGGATAATTTTCCCCGAGTACGTCCAATCTCCGGCCT
GGACGTCAGCACCCGCCGGAAGCTTT
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