mRNA_E-siliculosus-1a_M_contig93.17331.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17331.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17331.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17331.1 vs. uniprot
Match: D7G901_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G901_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.770e-40
Identity = 70/76 (92.11%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 MPDSAPPVCENCKPGKATGEREAAIEKMDCQASAATYDVVAACMEAHRGNVADCRTEWNDFRECHKESRRRSTGDA 228
            M DSAPPVCENCKPGKAT EREAAIEKMDCQA   TYDVVAACMEAHRGNVADCRTEWNDFRECHKESR RSTGDA
Sbjct:    1 MSDSAPPVCENCKPGKATDEREAAIEKMDCQA---TYDVVAACMEAHRGNVADCRTEWNDFRECHKESRGRSTGDA 73
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17331.1 vs. uniprot
Match: A0A6H5KSY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.260e-11
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 3 
Query:  105 YVRCCRCLHGGSQRECGGLSNGVERLQRVP 194
            YVRCCRCLHGGSQRECGGLSNG+ERLQ VP
Sbjct:   31 YVRCCRCLHGGSQRECGGLSNGMERLQSVP 60
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G901_ECTSI2.770e-4092.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSY6_9PHAE4.260e-1193.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:51174..52888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size231
Model size1037
Exons2
Ec32 orthologEc-15_002440.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2CKQX@1,2SG1M@2759
Seed eggNOG ortholog2880.D7G901
Seed ortholog evalue1.3e-32
Seed ortholog score145.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17331.1prot_E-siliculosus-1a_M_contig93.17331.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 51980..52888 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936474.0419827-UTR-E-siliculosus-1a_M_contig93:51173..519791622936474.0419827-UTR-E-siliculosus-1a_M_contig93:51173..51979Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 51174..51979 -
1696251094.9310987-UTR-E-siliculosus-1a_M_contig93:51173..519791696251094.9310987-UTR-E-siliculosus-1a_M_contig93:51173..51979Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 51174..51979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936474.0563202-CDS-E-siliculosus-1a_M_contig93:51979..521081622936474.0563202-CDS-E-siliculosus-1a_M_contig93:51979..52108Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 51980..52108 -
1696251094.9455705-CDS-E-siliculosus-1a_M_contig93:51979..521081696251094.9455705-CDS-E-siliculosus-1a_M_contig93:51979..52108Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 51980..52108 -
1622936474.0689323-CDS-E-siliculosus-1a_M_contig93:52786..528881622936474.0689323-CDS-E-siliculosus-1a_M_contig93:52786..52888Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 52787..52888 -
1696251094.9594069-CDS-E-siliculosus-1a_M_contig93:52786..528881696251094.9594069-CDS-E-siliculosus-1a_M_contig93:52786..52888Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 52787..52888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17331.1

>prot_E-siliculosus-1a_M_contig93.17331.1 ID=prot_E-siliculosus-1a_M_contig93.17331.1|Name=mRNA_E-siliculosus-1a_M_contig93.17331.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=77bp
MPDSAPPVCENCKPGKATGEREAAIEKMDCQASAATYDVVAACMEAHRGN
VADCRTEWNDFRECHKESRRRSTGDA*
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mRNA from alignment at E-siliculosus-1a_M_contig93:51174..52888-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17331.1 ID=mRNA_E-siliculosus-1a_M_contig93.17331.1|Name=mRNA_E-siliculosus-1a_M_contig93.17331.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1715bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:51174..52888- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGGACTCAGCACCCCCCGTTTGCGAGAATTGTAAACCCGGCAAGGC
AACAGGCGAGCGAGAAGCAGCGATAGAAAAAATGGATTGTCAGGCGAGTG
CGGTATGAGTATTCAGAGCGAGAGCTTAGCCGTCCAAGACGCAGTCACCC
ATCACGTAGCCATGCAGAACAAACATCTCCGAAGCAGTACCGTATAGTCG
ATGCGGAAAATATATGAGAAGTATCTGATATTTCCGTGCGATTGGCGTCC
CAACTGTTGGACAAACAAGATTTTCGTGCAACAGCAGAACTGCAACTAAC
TTCGGCCCCCCGGGGTTGACCCTGCGAAAGCGCCCTCATTTTGGAGAAAT
AAATACACGCACAGAAAGACTACCCATTCGTCTTCTTGTAAACGCACAAC
GCCTTCTTCGTCTCTATTCTCAGACAAAGAGTCCGCGATTCATTTTTCTT
TTCCCTCCCATTTCGGTACGCATGTGACCATCGCTCCAATTTCTACCGAA
CGAGCGACCTTGCCCCTCCGACTGAAGATTCCACTTTGTTACCTATCATT
TCATTACATAGTCCATGGGACGGCGTTTGGCCCCCAAACGTTATGCGTCG
GTACACAGCAGTCGGCCAACGCGCGGGACCAGATGCTTCCCAAAGGAATG
ATGAAAAACGTACGTTTCCCGCAGGACGACCAGAGTCACGCTTCCAACGC
GTTGCTGAGATAAGAAAATCCACGCGTTCTGATAGATAATGATGAACTTT
TGGGCGCCTCACCTTGTCCGTATTTGCCAGGCTACGTACGATGTTGTCGC
TGCTTGCATGGAGGCTCACAGAGGGAATGTGGCGGATTGTCGAACGGAGT
GGAACGACTTCAGAGAGTGCCATAAAGAGTCACGGAGAAGATCAACGGGC
GACGCATAAACTTCCGTGCATATCTAATGTTCAGCTCGATACGGCTCGAT
CGAGATATATCTACCAGCGGGAGCGGAGAGGTTGAATCTTGAATATAGTT
AACTGCACTCGGACTACCGTGCAGCCATCAGATCTACTAGAACAGCTCCT
TGTGGCCTGCAGGCTGGCCAATGTTTCAGCTGTTACTTTGCTGTTGCATC
TCTGGTGCACGGCGTTTTTGAGCGCACTGCCTGTAAGGCCGCCAGTGCTA
TAGTCTAGGTGCTTTGGGCCTTTGTCGCTTTCTCCGTGGAAACGTGGGCA
CTGGCAACACCATCGTCCATGCATATGCGTTGTTCTATGTACGTCGAAAG
CTCTTCCCTCCGATTAATTGCATCTGGGGGAAGAGAGCACCCACTTGTTG
TTTGTTACCTATATAGCTCAGCAAATACGTCAATGCGGACTTCTGTGCGG
TTGGATGTTTTGGAGTATTGCGTTGGTGCTTTGACAAGAGCTGTAGACCT
AGCGATGTTGTTTGTCTTCGATACGTAAGAGCTCTAGAACTGCTTGTAGA
CTCTTGCGGTCATTGACTGTAATACTGTTGATGTCCAAGATGCAGCCCTG
ACGCAAGGAGTGCTGGATCAGCTTGTAATTCCGCCTGGCTGCTTGTAGGA
GGTGATACACCTGGTATCTATCGCGCACAGAATAATATTGTGTCGTTCAC
GCCCTGCCTCAACGACCTGGTCTGAGTAACACGGTGACGTGCATACCGTA
GTGCCCTTGTGCATTCATCGGCCCTGGTGTTCATCGAGCATCCGTCGCAT
GTCAACACCATTCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:51174..52888-

>mRNA_E-siliculosus-1a_M_contig93.17331.1 ID=mRNA_E-siliculosus-1a_M_contig93.17331.1|Name=mRNA_E-siliculosus-1a_M_contig93.17331.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=462bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:51174..52888- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGGACTCAGCACCCCCCGTTTGCGAGAATTGTAAACCCGGCAAGGC
AACAGGCGAGCGAGAAGCAGCGATAGAAAAAATGGATTGTCAGGCGAGTG
CGATGCCGGACTCAGCACCCCCCGTTTGCGAGAATTGTAAACCCGGCAAG
GCAACAGGCGAGCGAGAAGCAGCGATAGAAAAAATGGATTGTCAGGCGAG
TGCGGCTACGTACGATGTTGTCGCTGCTTGCATGGAGGCTCACAGAGGGA
ATGTGGCGGATTGTCGAACGGAGTGGAACGACTTCAGAGAGTGCCATAAA
GAGTCACGGAGAAGATCAACGGGCGACGCATAAGCTACGTACGATGTTGT
CGCTGCTTGCATGGAGGCTCACAGAGGGAATGTGGCGGATTGTCGAACGG
AGTGGAACGACTTCAGAGAGTGCCATAAAGAGTCACGGAGAAGATCAACG
GGCGACGCATAA
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