mRNA_E-siliculosus-1a_M_contig93.17327.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17327.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17327.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17327.1 vs. uniprot
Match: A0A6H5KRW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW9_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 4.170e-94
Identity = 155/178 (87.08%), Postives = 160/178 (89.89%), Query Frame = 2 
Query:   20 MNKRTMDETALCDSILQFAGGQGLPAAGNSPYLSVPATGGSADATAGELAGQTPFKIDT-GGTAEPSACTGSTTTAIQRQHLQKEGLMRAFVGTKLGDFNMRGVEAGMSMCHVEKKPGKFLNTQGRRQLRAELSGPYGGKGSSLRRGKTSGAGRQVVGDVRSGGFVENKTKPGVPDSS 550
            MNKRT+DETALCDSILQFA GQGLP AGNSPY+SVPATGGSADA AGEL  QTPFKID  GG AEP+A T STTTAIQ QHLQKEGLMRAFVGTKLG+FNMRGVEAGMS CHVEKKPGK LNTQGRRQ+RAELSGPYG KGSSLRRGKTSG GRQVVGDVRSGGFVE  TK GVPDSS
Sbjct:    1 MNKRTLDETALCDSILQFADGQGLPVAGNSPYVSVPATGGSADAAAGELVDQTPFKIDNFGGPAEPNAATASTTTAIQ-QHLQKEGLMRAFVGTKLGEFNMRGVEAGMSWCHVEKKPGKVLNTQGRRQMRAELSGPYGEKGSSLRRGKTSGPGRQVVGDVRSGGFVEKNTKSGVPDSS 177
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRW9_9PHAE4.170e-9487.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:22252..27201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size558
Model size1606
Exons2
Ec32 orthologEc-15_002410.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17327.1prot_E-siliculosus-1a_M_contig93.17327.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 22271..26172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936472.486344-UTR-E-siliculosus-1a_M_contig93:22251..222701622936472.486344-UTR-E-siliculosus-1a_M_contig93:22251..22270Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 22252..22270 +
1696251094.3980062-UTR-E-siliculosus-1a_M_contig93:22251..222701696251094.3980062-UTR-E-siliculosus-1a_M_contig93:22251..22270Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 22252..22270 +
1622936472.5289536-UTR-E-siliculosus-1a_M_contig93:26172..272011622936472.5289536-UTR-E-siliculosus-1a_M_contig93:26172..27201Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 26173..27201 +
1696251094.427622-UTR-E-siliculosus-1a_M_contig93:26172..272011696251094.427622-UTR-E-siliculosus-1a_M_contig93:26172..27201Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 26173..27201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936472.5010464-CDS-E-siliculosus-1a_M_contig93:22270..225521622936472.5010464-CDS-E-siliculosus-1a_M_contig93:22270..22552Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 22271..22552 +
1696251094.4080844-CDS-E-siliculosus-1a_M_contig93:22270..225521696251094.4080844-CDS-E-siliculosus-1a_M_contig93:22270..22552Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 22271..22552 +
1622936472.5134885-CDS-E-siliculosus-1a_M_contig93:25896..261721622936472.5134885-CDS-E-siliculosus-1a_M_contig93:25896..26172Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 25897..26172 +
1696251094.4184253-CDS-E-siliculosus-1a_M_contig93:25896..261721696251094.4184253-CDS-E-siliculosus-1a_M_contig93:25896..26172Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 25897..26172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17327.1

>prot_E-siliculosus-1a_M_contig93.17327.1 ID=prot_E-siliculosus-1a_M_contig93.17327.1|Name=mRNA_E-siliculosus-1a_M_contig93.17327.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=186bp
MNKRTMDETALCDSILQFAGGQGLPAAGNSPYLSVPATGGSADATAGELA
GQTPFKIDTGGTAEPSACTGSTTTAIQRQHLQKEGLMRAFVGTKLGDFNM
RGVEAGMSMCHVEKKPGKFLNTQGRRQLRAELSGPYGGKGSSLRRGKTSG
AGRQVVGDVRSGGFVENKTKPGVPDSSYPPASKDR*
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mRNA from alignment at E-siliculosus-1a_M_contig93:22252..27201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17327.1 ID=mRNA_E-siliculosus-1a_M_contig93.17327.1|Name=mRNA_E-siliculosus-1a_M_contig93.17327.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4950bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:22252..27201+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGTGTGTGTACGTGGAGCAATGAACAAGCGAACAATGGATGAGACAGCAC
TGTGCGATTCAATTCTCCAGTTCGCCGGCGGACAGGGTCTACCGGCCGCG
GGTAATTCTCCCTATCTTTCCGTGCCCGCCACGGGAGGGTCAGCTGATGC
AACAGCTGGCGAGCTGGCCGGTCAGACACCATTCAAAATAGACACCGGCG
GGACTGCTGAGCCTAGCGCTTGCACCGGCTCTACGACGACTGCAATTCAA
CGACAACACCTGCAGAAGGAGGGATTGATGCGGGCTTTCGTTGGCACCAA
GGTACGGGGGTTGAGGTGTACTGTAGCAGTGATGGAAAAGAGGGCTGTGA
AAAGCCTATGTCTTAACTGGAGGTGGTTCGACACTCTTCGATCGAAAGTT
GGCTTGAAACGTTCATGAGCACTTGCTTGCCTGGTTTCCGGCCCGTCTAA
AGTCAAGGGGGTTCGACGACTTCACTTCAACACCGCACGCGCCACGGCGG
TGCTGGTTTTGGAAAATTGAAGATCCGCCGATTCCAGCGGTGTTACCGAC
ACCAGAGCGGATACGCGGCCCCGCCTAGTTCTCGAGGGGCCCGTATTGAC
TGTTGTCAACCCGCGGAATAGCTGGACCTGTGGGTTAAGTCGGAGGGACA
CATCATGTGTAAGTTGTACAGCAGTTCCGTTGAAATTGAAGCGAACGAAC
ATGATCAAATGATTTGTAGCTCGGGCGCACATGTAATGCATATTTAGCAT
TTAACCCTGTTGCGCGTAGAACGCAGCAATTTGTGACCTAGAGAAATACC
CTGAGGTATCGACCATGTCACGAAGGGGTCTAAACTTGTTCGAACGGGAG
CTCATTGAAGGCAGAGGAGCGGACAACGGTTTCTATTAGGAAAAATAAAC
TGACACAGAAAGACTACCCGTTCGAGATAACCCACAGCAGTCAACGGGAT
GTTTTCTTTTTTCTGACGTCGACAGACTATGTAATACAGTCGTGGGCCCG
GTTTAGCGGTCCATAGTGTCACGAAATTTTATAACCGCTATTCAGGGCAT
CGCCGCTAAACCACTTCAGCGGTCATTAACCGCTAAACCAGGAGGCTCAA
TAGTGGTTATGAACCGCTAAACCGGGAAAAAGCCCTTTTTTGCCCTACAA
GAGCAGCGTCGAGAGCTCATCTTGAGAGGGCCATGTTTCTCATTGCAGCA
GTCATACGAAGGTGCAGATGAAGAAGTAACGAGCCAATGAAGGACAACGC
CGCAAGCACATTCATTAATAATGCATTTTAATTTGCCAAAGCAACGATGA
TTTTTCTCCCTTCGGGACTGTTATGCCCCTCATCAAGACTGGAAAATCGT
TTAAGTGAAGGTGATGAGACAAACTTGTGACAGCGCAATGGCAATCAACC
GCGTGCTTGAGCATCTTATTTCTGCCATGTGTCGCGTATCGATCATTCTT
AACCCAAAATAGTCTCTCTGGTTCTGCCTGGCGCGCTGGAGGGGCGGCGT
GCGCTGCGAGGAACGCCATTTTTGCCTGGCGAACATAGTCTGCTGCTTCG
CTTACGCCACACGACTCCGCGCTCTCCACGCTGGCCAAAATCCGATGATG
GCTCCGAGTATGGTGACGGCGCCATCACCCCCCTGCCCTTCGCACCGTCA
ACTTTGCCGTGGTATCTAGCCCTAGATCTAGGTCGTCGTGTCGTCGTCGG
AGGGGTTAGGCCCTCCTCCATGTACACACTGGACAACTTTCAACAACCTC
GTCATTCGCGTCCTTTTGTGCAAAGCTTCGGCGATCTCTTCCTGTGCGCA
TTTTTTCTGAGTGCGCTACCTTCTGGTCAAGAAGCTTCAAAACCTCGAGC
TTCTAGCCAAAGTAGAGCCGCGTGTGGGGCTGTTGTTGTGTAGCTGCAGT
GCGAGTTTTCCGCGCGCCTGGTGCTAGGAAGCCACCTTCCACCTCTTGGC
GCTTGGCCGGATTTGAGAAGTGAGGGGAACTCTGCGCCTTCTTGGTTGCA
CGCAGGTTGCATCTCGTTGTCATCCGGATCCTCCACCTCCCCACACATGC
CGTGTATGCTGGCACCACAGCAACCTTTATTATCGTGCACGGCGCTTGGA
CTCAGTGCCGCATCTAGAAGCTTGCACAGTTCTCCACCCACGCGCCGCAT
GGTGTGTGTCTTTATTATTAGCATCGACCGCCCTAACCGGCTGACCAATG
AAAAGACGTCGTCGTCAGTCTCAGCGCGGTTGAAAACACAAAACACTTCT
ATATGCCATTAACTGGGACCCCGTGAGAGGGTGGCATGGGGCAGGCAAAA
GCTATTCCCCGGATTAAGGACAGAAACAGTAGCAACAGAGGAAAACTGCT
ACCTTGCACTCGAGTTCGTTTTGGAGTGCTTTCACCATCCTCCTCCTTGC
TTTCACCACCGTCACTCTCATCGTCGTTTTTACAGCTATTTTTCGGCAAT
TCTTCTCTAGCCCTGCGTCGTTTGGTGTGTGTGCGTGTGTCTCGCTGTGT
CCTTTTTATTGTGAGCATCGACCAGCTAACAGGCTGACCAATGTCGCTGT
GCTGTGAGTAGGTACAAGCGAAGTGCGCACTAGGCCTCCGCAAAAATCGA
ACCGATAACCGCTATTGGTGGCTGAAAACATGCCCAATAACCGCTATTGA
GGGCACGACCGGTTTAGCTGTTGTATAACCGCTAAACCGGGGTGCAGCCG
TGTCACGAGATTTTATAACCGCTATTCAGGGCATCCCGCTAAACAGGGAA
CCGCTAAACCGGGCCCACGACTGTATGTAATCGTTACCTTTTTGTTCCAC
TGCTATGACATTTTGCCGCTCTTGACTTGGGCGAGAGAACTGGTTTTTTT
GTCACAAGCAAGCGCGTTTTGAGTACAAGTCGGCTGGCGTGCTAGAGAAC
CCTATTTTAACCGGACTTCCGCGCAAGCTCAAAATTGTTTATACGAGGTG
GACGCACATCAGTTTGTGAAACTTTTCTATGTCGAGAGTTGCGGTCTTGC
GCATGCGTCTCGAGCTGATGTTGTAGATACAACCAAGACGCCCAGGAGAT
ACATGCTCGTCTTACTGCTCGGGGTCTCCAGCCAGCTACTGGTATGCACC
TGCAAGCAACGCGATCACGGCGCACTCCGGAAGCGGGATTGCTGCCTTGG
GTGCCTGTCTTGCAAAGCATAGCTTATGGAAGGGATAGCCAGTAGGGCCG
GGCCGGCTTGGATAATCTGGATGCAAAGGACGGAAAGTGCCGTTTTAAAC
AGAAAGTCACCGCGGCTAGACGAACAGCTTCGAGAAAGGTTTTGGGCCCA
CAGCAGTGTATCTCGTTAAGAATGAACTTTCGGGGCAGATGATGAAGTGT
TGGGGACATGGATTTATTCGGTGAAGGTTGTTCCTATGTAGTATCATACT
CGCTTGGTGATGTCTGTTTTCGAATTGCAGTGGGGGGCCCTCAGTCACGA
CGGTATGTGCCCGGCGCATCGCCCGGCGCTATCCAGGGGGACCGGCGCTA
TTCAATGTACAAAATGACTTGGTGATTCAGTCTGTGCCAAGCAATTTCAC
CGGCGCTAACAACGCCTTGATTTTATGTTCAATGATGCCCGCGTCAACGT
ATCTTTGACTTCCTTTTTCGACCTCCTGCGCGCGCCACTGGCCAGCTTGG
GGATTTCAATATGCGGGGGGTTGAGGCGGGCATGTCGATGTGCCATGTCG
AAAAGAAGCCAGGGAAGTTTCTGAATACGCAAGGCCGGCGGCAACTGCGG
GCGGAGCTCAGCGGCCCGTACGGCGGGAAAGGGTCGTCACTGCGGAGGGG
GAAAACAAGTGGAGCCGGACGCCAGGTGGTGGGCGACGTTAGGAGTGGTG
GCTTTGTTGAAAACAAAACAAAACCGGGGGTGCCGGACAGCTCGTATCCG
CCTGCCTCGAAAGATCGGTGAGGGTAGCGTCGATCTGGCGGCACGCGGAT
TGCTTCTACGCCCGCCCGCCACCGGATCCGACGGTCCACTGGGATGCCTT
GTTTCTGCATCTCGGTGCTTGATGTGGAAACCAGCTGCTACTTCTACCGT
ATTGTGTGCGACCGTTCCGTGGGACACCTAGTGAAAGAAGGGTGGACGGA
GGTGTAAGCAAATGTAGGCAGCCATTAGACACAATTGAAGAAACAGGGTA
ACACGAGTCTGGTACGACGCGTACCTGAAACATTGTCGAGTCCTTCCGTT
GTAAATAGTGAATCATGTTGGTAGGTTATCAATTGCCCTGGGAATACCCC
CGCCACGAGCGAGAGAGGAAAGAGAGAGGGGAGGGAGGGAGGGAGAGAAA
GGAAGAAGAGAGATGCAAATGTCCTCTTAAACAGTGCGCTGTGTGCGGCA
GGCATGCAAGGCAACAGACAAGCAGGAGGCAGATACATACATTCAGGATA
GCGCTACAGTGTAGTAGCACCTCTCACGTATATCGGAAGAGAGTTTGTGT
GTATGAGCACAACTGAAATAGGGCGAACCGCATGCATGCGTGCGACCGCA
GCACAATCTGCATCCCATCATTGCGTCCCCCTTGCCGTTGAAAAAGAAAA
AGATGTGTGAATGTTGTGGAAGGGAGAAACAGGAGCGAAGAGTCGAGGCG
AGTATACAGCAGTACTGGCAATAAACTTGACCCGGTTAGGATTCAGGGAC
GGGGTCCGGCACTGAATACAATACAGTGCTGTGAACTGTGAGCAGGGCGT
GCGTTTTGGTCGTGCGTGTGATCGAACACGAACAGTACAAAAGAATAGAT
CAAAATCCCAAGTGTTGAGATAATCACGTCCTACTCTGTACCGCCCACAA
AACATGGGAAATTGGATCGGATGTGTAGCTATTACAGCGATTGGTTCCCG
GAGCTCTCCCTCCGCTCTACTCATCCTCCACTTAGCGGAGCGCCGCATGA
AATGACCGCATCATGAAGGAAAGTAGGACGATCAGAAGAGGCTACTCTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:22252..27201+

>mRNA_E-siliculosus-1a_M_contig93.17327.1 ID=mRNA_E-siliculosus-1a_M_contig93.17327.1|Name=mRNA_E-siliculosus-1a_M_contig93.17327.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1116bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:22252..27201+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAACAAGCGAACAATGGATGAGACAGCACTGTGCGATTCAATTCTCCA
GTTCGCCGGCGGACAGGGTCTACCGGCCGCGGGTAATTCTCCCTATCTTT
CCGTGCCCGCCACGGGAGGGTCAGCTGATGCAACAGCTGGCGAGCTGGCC
GGTCAGACACCATTCAAAATAGACACCGGCGGGACTGCTGAGCCTAGCGC
TTGCACCGGCTCTACGACGACTGCAATTCAACGACAACACCTGCAGAAGG
AGGGATTGATGCGGGCTTTCGTTGGCACCAAGATGAACAAGCGAACAATG
GATGAGACAGCACTGTGCGATTCAATTCTCCAGTTCGCCGGCGGACAGGG
TCTACCGGCCGCGGGTAATTCTCCCTATCTTTCCGTGCCCGCCACGGGAG
GGTCAGCTGATGCAACAGCTGGCGAGCTGGCCGGTCAGACACCATTCAAA
ATAGACACCGGCGGGACTGCTGAGCCTAGCGCTTGCACCGGCTCTACGAC
GACTGCAATTCAACGACAACACCTGCAGAAGGAGGGATTGATGCGGGCTT
TCGTTGGCACCAAGCTTGGGGATTTCAATATGCGGGGGGTTGAGGCGGGC
ATGTCGATGTGCCATGTCGAAAAGAAGCCAGGGAAGTTTCTGAATACGCA
AGGCCGGCGGCAACTGCGGGCGGAGCTCAGCGGCCCGTACGGCGGGAAAG
GGTCGTCACTGCGGAGGGGGAAAACAAGTGGAGCCGGACGCCAGGTGGTG
GGCGACGTTAGGAGTGGTGGCTTTGTTGAAAACAAAACAAAACCGGGGGT
GCCGGACAGCTCGTATCCGCCTGCCTCGAAAGATCGGTGACTTGGGGATT
TCAATATGCGGGGGGTTGAGGCGGGCATGTCGATGTGCCATGTCGAAAAG
AAGCCAGGGAAGTTTCTGAATACGCAAGGCCGGCGGCAACTGCGGGCGGA
GCTCAGCGGCCCGTACGGCGGGAAAGGGTCGTCACTGCGGAGGGGGAAAA
CAAGTGGAGCCGGACGCCAGGTGGTGGGCGACGTTAGGAGTGGTGGCTTT
GTTGAAAACAAAACAAAACCGGGGGTGCCGGACAGCTCGTATCCGCCTGC
CTCGAAAGATCGGTGA
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