mRNA_E-siliculosus-1a_M_contig93.17356.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17356.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17356.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 3.090e-53
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = -1 
Query:    1 IGGEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVDSKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 309
            IGGEEHLLGKT E +AEG+K VV LL+AL+EDGVDSKDFV+FSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME
Sbjct:  426 IGGEEHLLGKTSEGVAEGEKMVVTLLKALDEDGVDSKDFVLFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 528
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.030e-33
Identity = 73/103 (70.87%), Postives = 78/103 (75.73%), Query Frame = -1 
Query:    1 IGGEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVDSKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 309
            IGGEEHLLGKTPEE+AEG+K VVKLL+ALEEDG+DS+DFVVFSVATHLAMLFNGATLRPQDFFGL                        TESAEESLSTVCME
Sbjct:  658 IGGEEHLLGKTPEEVAEGEKSVVKLLQALEEDGIDSEDFVVFSVATHLAMLFNGATLRPQDFFGL------------------------TESAEESLSTVCME 736
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: A0A6H5JH42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.020e-26
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = -1 
Query:    1 KRVVKLLEALEEDGVDSKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 252
            +RV+ LLEALEED VDSKDF VFS+ATH     NG TL P++FFGLVG+TT  +PSVGRMMI+LP  GKQ ESA ESLS VCME
Sbjct:  109 ERVLTLLEALEEDDVDSKDFGVFSLATHWH---NGDTLHPEEFFGLVGETTCLRPSVGRMMIQLPTMGKQPESAVESLSAVCME 189
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.890e-13
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = -1 
Query:    1 GEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVDSKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 303
            GE+HLLG +PE        V K++E L+E   + +D    SV T L ++FN A LR  DFF L   T Y+    G +++R PA+GKQTESA   L  V  E
Sbjct: 1224 GEDHLLGNSPE----AKSWVAKVMEGLDERRFECRDICRLSVYTQLGLMFNAAALRDGDFFHLSANTMYYNNKRGTLLMRPPAKGKQTESANGELKNVLKE 1320
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.660e-12
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = -1 
Query:    1 IGGEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVD--SKDFVVFSVATHLAMLFNGATLRPQDFFGLVGKTTYFKPSVGRMMIRLPAEGKQTESAEESLSTVCME 309
            + GE+HLLG+TP+E  EG   +  +++ L+ED  +   +D+  FSV T L  LFN A LR +    L  KT Y+    GR+ +R P +GKQ  +A + L TV  E
Sbjct:  235 VVGEDHLLGRTPQEKKEGKAWIAGVVKGLKEDVEEWNCQDWCRFSVVTQLGCLFNAACLRQKPALNLSAKTAYYNNDQGRIAMRPPKKGKQHRTANKRLDTVLKE 339
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.270e-5
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = -1 
Query:  178 IGGEEHLLGKTPEEIAEGDKRVVKLLEALEEDGVDSKDFVVFSV 309
            IGG+ HL G TP+E+AEG +RV  L++ALE +G+ SKDFVVF +
Sbjct:  620 IGGD-HLFGTTPDEVAEGKRRVDALVDALEVEGITSKDFVVFMI 662
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LJ27_ECTSI3.090e-5391.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A3_9PHAE1.030e-3370.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH42_9PHAE1.020e-2670.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L073_9PHAE1.890e-1342.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3S0_ECTSI1.660e-1240.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6S7_9PHAE1.270e-559.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:359769..360078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size309
Model size311
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.5993116-CDS-E-siliculosus-1a_M_contig93:359768..3600771622936471.5993116-CDS-E-siliculosus-1a_M_contig93:359768..360077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 359769..360077 +
1696251094.0583084-CDS-E-siliculosus-1a_M_contig93:359768..3600771696251094.0583084-CDS-E-siliculosus-1a_M_contig93:359768..360077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 359769..360077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17356.1prot_E-siliculosus-1a_M_contig93.17356.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 359769..360077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17356.1

>prot_E-siliculosus-1a_M_contig93.17356.1 ID=prot_E-siliculosus-1a_M_contig93.17356.1|Name=mRNA_E-siliculosus-1a_M_contig93.17356.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=103bp
FHANCRQRFFGGLRLLSFCREPNHHSSDARFEVGGLANQSEEILGAQGGS
VEKHCQMRSHAENDEIFGINAILFQRLQQLHHPLVTLCDFLGRFAEQVLF
STD
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mRNA from alignment at E-siliculosus-1a_M_contig93:359769..360078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17356.1 ID=mRNA_E-siliculosus-1a_M_contig93.17356.1|Name=mRNA_E-siliculosus-1a_M_contig93.17356.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=310bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:359769..360078+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTCCATGCAAACTGTCGACAACGATTCTTCGGCGGACTCCGTCTGCTTTC
CTTCTGCCGGGAGCCTAATCATCATTCTTCCGACGCTCGGTTTGAAGTAG
GTGGTCTTGCCAACCAGTCCGAAGAAATCCTGGGGGCGCAGGGTGGCTCC
GTTGAAAAGCATTGCCAGATGCGTAGCCACGCTGAAAACGACGAAATCTT
TGGAATCAACGCCATCCTCTTCCAGCGCCTCCAACAGCTTCACCACCCTC
TTGTCACCCTCTGCGATTTCCTCGGGCGTTTTGCCGAGCAGGTGCTCTTC
TCCACCGATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:359769..360078+

>mRNA_E-siliculosus-1a_M_contig93.17356.1 ID=mRNA_E-siliculosus-1a_M_contig93.17356.1|Name=mRNA_E-siliculosus-1a_M_contig93.17356.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:359769..360078+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTCCATGCAAACTGTCGACAACGATTCTTCGGCGGACTCCGTCTGCTTTC
CTTCTGCCGGGAGCCTAATCATCATTCTTCCGACGCTCGGTTTGAAGTAG
GTGGTCTTGCCAACCAGTCCGAAGAAATCCTGGGGGCGCAGGGTGGCTCC
GTTGAAAAGCATTGCCAGATGCGTAGCCACGCTGAAAACGACGAAATCTT
TGGAATCAACGCCATCCTCTTCCAGCGCCTCCAACAGCTTCACCACCCTC
TTGTCACCCTCTGCGATTTCCTCGGGCGTTTTGCCGAGCAGGTGCTCTTC
TCCACCGATTTCCATGCAAACTGTCGACAACGATTCTTCGGCGGACTCCG
TCTGCTTTCCTTCTGCCGGGAGCCTAATCATCATTCTTCCGACGCTCGGT
TTGAAGTAGGTGGTCTTGCCAACCAGTCCGAAGAAATCCTGGGGGCGCAG
GGTGGCTCCGTTGAAAAGCATTGCCAGATGCGTAGCCACGCTGAAAACGA
CGAAATCTTTGGAATCAACGCCATCCTCTTCCAGCGCCTCCAACAGCTTC
ACCACCCTCTTGTCACCCTCTGCGATTTCCTCGGGCGTTTTGCCGAGCAG
GTGCTCTTCTCCACCGAT
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