mRNA_E-siliculosus-1a_M_contig93.17349.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17349.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17349.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:327701..328051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size351
Model size351
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.41368-CDS-E-siliculosus-1a_M_contig93:327700..3280511622936471.41368-CDS-E-siliculosus-1a_M_contig93:327700..328051Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 327701..328051 +
1696251094.0082169-CDS-E-siliculosus-1a_M_contig93:327700..3280511696251094.0082169-CDS-E-siliculosus-1a_M_contig93:327700..328051Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 327701..328051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17349.1prot_E-siliculosus-1a_M_contig93.17349.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 327701..328051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17349.1

>prot_E-siliculosus-1a_M_contig93.17349.1 ID=prot_E-siliculosus-1a_M_contig93.17349.1|Name=mRNA_E-siliculosus-1a_M_contig93.17349.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=117bp
KRVLFSCEFFLHESRVLRLSISKWTPTLVGVHTRSRWEAMCVSVEFRMLR
NCETSPRMMNDTGPIPPELGNLSNLQKLDLRGPLFGGGGLTGESGGNETT
ISSPCDFCRTNLNLNPA
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mRNA from alignment at E-siliculosus-1a_M_contig93:327701..328051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17349.1 ID=mRNA_E-siliculosus-1a_M_contig93.17349.1|Name=mRNA_E-siliculosus-1a_M_contig93.17349.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=351bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:327701..328051+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAAAGAGTTTTGTTTTCTTGCGAGTTCTTCCTGCATGAATCCCGCGTACT
ACGCCTCTCTATTTCCAAGTGGACGCCAACATTAGTCGGCGTCCACACAC
GCAGTAGGTGGGAAGCAATGTGTGTTTCTGTGGAATTCCGAATGCTGAGG
AACTGTGAAACTTCCCCGCGTATGATGAACGACACAGGGCCGATCCCGCC
TGAGCTAGGAAATCTGAGCAACTTGCAGAAGCTTGACCTCCGTGGCCCAC
TTTTTGGTGGCGGCGGATTAACCGGTGAGTCGGGGGGGAACGAAACGACC
ATCTCTTCTCCGTGCGATTTCTGCAGAACAAATTTGAACCTGAATCCCGC
T
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:327701..328051+

>mRNA_E-siliculosus-1a_M_contig93.17349.1 ID=mRNA_E-siliculosus-1a_M_contig93.17349.1|Name=mRNA_E-siliculosus-1a_M_contig93.17349.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=702bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:327701..328051+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAAAGAGTTTTGTTTTCTTGCGAGTTCTTCCTGCATGAATCCCGCGTACT
ACGCCTCTCTATTTCCAAGTGGACGCCAACATTAGTCGGCGTCCACACAC
GCAGTAGGTGGGAAGCAATGTGTGTTTCTGTGGAATTCCGAATGCTGAGG
AACTGTGAAACTTCCCCGCGTATGATGAACGACACAGGGCCGATCCCGCC
TGAGCTAGGAAATCTGAGCAACTTGCAGAAGCTTGACCTCCGTGGCCCAC
TTTTTGGTGGCGGCGGATTAACCGGTGAGTCGGGGGGGAACGAAACGACC
ATCTCTTCTCCGTGCGATTTCTGCAGAACAAATTTGAACCTGAATCCCGC
TAAAAGAGTTTTGTTTTCTTGCGAGTTCTTCCTGCATGAATCCCGCGTAC
TACGCCTCTCTATTTCCAAGTGGACGCCAACATTAGTCGGCGTCCACACA
CGCAGTAGGTGGGAAGCAATGTGTGTTTCTGTGGAATTCCGAATGCTGAG
GAACTGTGAAACTTCCCCGCGTATGATGAACGACACAGGGCCGATCCCGC
CTGAGCTAGGAAATCTGAGCAACTTGCAGAAGCTTGACCTCCGTGGCCCA
CTTTTTGGTGGCGGCGGATTAACCGGTGAGTCGGGGGGGAACGAAACGAC
CATCTCTTCTCCGTGCGATTTCTGCAGAACAAATTTGAACCTGAATCCCG
CT
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